BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0179.p (275 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775074.1| EAL domain-containing protein [Herbaspirillu... 553 e-155 ref|YP_004753672.1| putative signaling protein EAL [Collimonas f... 306 3e-81 ref|YP_001352434.1| hypothetical protein mma_0744 [Janthinobacte... 303 1e-80 ref|YP_004685962.1| signaling protein Eal [Cupriavidus necator N... 180 2e-43 ref|YP_726706.1| putative signalling protein EAL [Ralstonia eutr... 179 3e-43 ref|XP_002540085.1| conserved hypothetical protein [Ricinus comm... 179 5e-43 ref|YP_002005787.1| hypothetical protein RALTA_A1780 [Cupriavidu... 176 2e-42 ref|ZP_08503922.1| Putative signaling protein EAL [Methyloversat... 174 1e-41 ref|YP_296180.1| hypothetical protein Reut_A1972 [Ralstonia eutr... 172 5e-41 ref|YP_583526.1| putative signalling protein EAL [Cupriavidus me... 168 8e-40 >ref|YP_003775074.1| EAL domain-containing protein [Herbaspirillum seropedicae SmR1] gb|ADJ63166.1| EAL domain containing protein [Herbaspirillum seropedicae SmR1] Length = 275 Score = 553 bits (1425), Expect = e-155, Method: Compositional matrix adjust. Identities = 274/275 (99%), Positives = 274/275 (99%) Query: 1 MAYQALNAYLARLSKGATTASPVWLDEQGRAAGRFFNTSLTSAFQPVRSFDDGQVIACEA 60 MAYQALNAYLARLSKGATTASPVWLDEQGRAAGRFFNTSLTSAFQPVRSFDDGQVIACEA Sbjct: 1 MAYQALNAYLARLSKGATTASPVWLDEQGRAAGRFFNTSLTSAFQPVRSFDDGQVIACEA 60 Query: 61 FARSHSAVDDGLHLWKLLDQAASDDESVELDRLCRMLHAINYYRQVGEDAPELHLSVHAR 120 FARSHSAVDDGLHLWKLLDQAASDDESVELDRLCRMLHAINYYRQVGEDAPELHLSVHAR Sbjct: 61 FARSHSAVDDGLHLWKLLDQAASDDESVELDRLCRMLHAINYYRQVGEDAPELHLSVHAR 120 Query: 121 LLAAVNNNHGVAYRRILAALELPHERIVLQLPVVTPNQRWLLNYVLDNYRRNGFRLGVSA 180 LLAAVNNNHGVAYRRILAALELPHERIVLQLPVVTPNQRWLLNYVLDNYRRNGFRLGVSA Sbjct: 121 LLAAVNNNHGVAYRRILAALELPHERIVLQLPVVTPNQRWLLNYVLDNYRRNGFRLGVSA 180 Query: 181 NSPLEALGLLDKVRPDLIKVDARELADPDSVALLLLRAAEQGVRIFFKRVESREVFERLQ 240 NSPLEALGLLDKVRPDLIKVDARELADPDSVALLLLRAAEQGVRIFFKRVESREVF RLQ Sbjct: 181 NSPLEALGLLDKVRPDLIKVDARELADPDSVALLLLRAAEQGVRIFFKRVESREVFGRLQ 240 Query: 241 QYGQALAQPIHAQGYLWDVPAAHLPETFLALRDAA 275 QYGQALAQPIHAQGYLWDVPAAHLPETFLALRDAA Sbjct: 241 QYGQALAQPIHAQGYLWDVPAAHLPETFLALRDAA 275 >ref|YP_004753672.1| putative signaling protein EAL [Collimonas fungivorans Ter331] gb|AEK62849.1| putative signaling protein EAL [Collimonas fungivorans Ter331] Length = 301 Score = 306 bits (783), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 154/274 (56%), Positives = 195/274 (71%), Gaps = 14/274 (5%) Query: 1 MAYQALNAYLARLSKGATTASP--------VWLDEQGRAAGRFFNTSLTSAFQPVRSFD- 51 M++ AL YLARL+ +P VWLD GRA GR+FNT+LTS FQP+R + Sbjct: 1 MSFPALEQYLARLNGARDDTNPDPARSDCRVWLDSDGRAQGRYFNTTLTSVFQPLRRIEA 60 Query: 52 -----DGQVIACEAFARSHSAVDDGLHLWKLLDQAASDDESVELDRLCRMLHAINYYRQV 106 G +I E FA S+SA D+GL+LWKLLD AASDDES+ELDRLCRMLH+IN+YRQ Sbjct: 61 RMSEGKGAIIGHEGFAHSYSANDNGLYLWKLLDHAASDDESIELDRLCRMLHSINFYRQA 120 Query: 107 GEDAPELHLSVHARLLAAVNNNHGVAYRRILAALELPHERIVLQLPVVTPNQRWLLNYVL 166 A +L+LSVHARLLAAV++NHG+A+RRIL L LPHERIVLQLP +T NQ WLLNYVL Sbjct: 121 EAVAGDLYLSVHARLLAAVDSNHGMAFRRILTLLGLPHERIVLQLPTITENQGWLLNYVL 180 Query: 167 DNYRRNGFRLGVSANSPLEALGLLDKVRPDLIKVDARELADPDSVALLLLRAAEQGVRIF 226 DNYRRN FRL V+A+ +A LL++VRPD+IK+DAR + + LL A++G+++ Sbjct: 181 DNYRRNHFRLAVNADDVAQAASLLERVRPDVIKIDARGVTHDEQTTRLLEDCAKRGIQVI 240 Query: 227 FKRVESREVFERLQQYGQALAQPIHAQGYLWDVP 260 FKR+E E LQQ + A P+H QG+LWD+P Sbjct: 241 FKRLEKARDLEVLQQLARIAALPLHGQGFLWDLP 274 >ref|YP_001352434.1| hypothetical protein mma_0744 [Janthinobacterium sp. Marseille] gb|ABR91042.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 283 Score = 303 bits (777), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 142/266 (53%), Positives = 195/266 (73%) Query: 1 MAYQALNAYLARLSKGATTASPVWLDEQGRAAGRFFNTSLTSAFQPVRSFDDGQVIACEA 60 M++ AL YL+RL + +WLD+QGRA GR+FN++LTSAFQP+R+ + G ++ + Sbjct: 1 MSFPALQQYLSRLHDAPQADTTLWLDQQGRAHGRYFNSTLTSAFQPIRTPETGGIVGVQG 60 Query: 61 FARSHSAVDDGLHLWKLLDQAASDDESVELDRLCRMLHAINYYRQVGEDAPELHLSVHAR 120 F RS+S D GL +WKLLD A+D++SVELDRLCR+LHA+N+YRQ +L+LSVHAR Sbjct: 61 FMRSYSKNDTGLSIWKLLDTGATDEQSVELDRLCRLLHAVNFYRQPEMVDYDLYLSVHAR 120 Query: 121 LLAAVNNNHGVAYRRILAALELPHERIVLQLPVVTPNQRWLLNYVLDNYRRNGFRLGVSA 180 LLAAV++NHG+++RR+L L LPH++IVLQLP + P+Q WL+NYV DNYRRNGFRL V+A Sbjct: 121 LLAAVDSNHGMSFRRVLDVLGLPHKKIVLQLPQIQPDQAWLMNYVADNYRRNGFRLAVNA 180 Query: 181 NSPLEALGLLDKVRPDLIKVDARELADPDSVALLLLRAAEQGVRIFFKRVESREVFERLQ 240 + L LL++V+PD+IKVD RE+ D + LL A E+ V++ FKRVES ++E+L+ Sbjct: 181 ADARQGLDLLEQVQPDVIKVDVREITDEAATLDLLCVAGEKDVKLVFKRVESTAIYEKLR 240 Query: 241 QYGQALAQPIHAQGYLWDVPAAHLPE 266 + G Q I AQGYLWD P A + Sbjct: 241 KLGAQAQQTILAQGYLWDQPKASFAQ 266 >ref|YP_004685962.1| signaling protein Eal [Cupriavidus necator N-1] gb|AEI77481.1| signaling protein Eal [Cupriavidus necator N-1] Length = 283 Score = 180 bits (456), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 108/259 (41%), Positives = 148/259 (57%), Gaps = 8/259 (3%) Query: 2 AYQALNAYLARLSKGATTASPVWLDEQGRAAGRFFNTSLTSAFQPVRSFDDGQVIACEAF 61 A AL YL L + +W D +G+ G+FFN SLTSAF+P+ + D QV+A E Sbjct: 10 AVPALQRYLESLPRQPLADRQLWRDARGQVQGQFFNCSLTSAFEPLVTLADRQVVAHEGS 69 Query: 62 ARSHSAVDDGLHLWKLLDQAASDDESVELDRLCRMLHAINYYRQVGEDAPELHLSVHARL 121 +++ GL WKL AA D+ V LDRL R+LHAINY+ GE +L L+VH RL Sbjct: 70 IHTYAEDGVGLAAWKLFAMAADDNTLVSLDRLSRLLHAINYFAAEGEH--KLVLNVHNRL 127 Query: 122 LAAVNNNHGVAYRRILAALELPHERIVLQLPVVTPNQRWLLNYVLDNYRRNGFRLGVSAN 181 LAAV ++HG A+RR L +L LP ER V+Q+P + LL +V+ NYRRNGF + + A+ Sbjct: 128 LAAVTDDHGAAFRRALQSLGLPLERFVIQVPASANDDLSLLLHVVGNYRRNGFAVSLQAS 187 Query: 182 SPLEALGLLDKVRPDLIKVDARELADPDSVALLLLRAAEQGVRIFFKRVESREVFERLQQ 241 P EA L+ PD +K+D R ++ L AA GV + +R+++ E ERLQ Sbjct: 188 DPAEAGALMAHALPDWLKLDMRRTWTDRQLSGLRASAASAGVTLIGRRLQNAESIERLQA 247 Query: 242 YGQALAQ------PIHAQG 254 G L Q P+ A G Sbjct: 248 AGIGLGQGAFAGAPVSAAG 266 >ref|YP_726706.1| putative signalling protein EAL [Ralstonia eutropha H16] emb|CAJ93338.1| putative signalling protein EAL [Ralstonia eutropha H16] Length = 283 Score = 179 bits (455), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 108/259 (41%), Positives = 148/259 (57%), Gaps = 8/259 (3%) Query: 2 AYQALNAYLARLSKGATTASPVWLDEQGRAAGRFFNTSLTSAFQPVRSFDDGQVIACEAF 61 A AL YL L + +W D +G+ G+FFN SLTSAF+P+ + D QV+A E Sbjct: 10 AVPALQRYLESLPRQPLADRQLWRDARGQVQGQFFNCSLTSAFEPLVTLADRQVVAHEGS 69 Query: 62 ARSHSAVDDGLHLWKLLDQAASDDESVELDRLCRMLHAINYYRQVGEDAPELHLSVHARL 121 +++ GL WKL AA D+ V LDRL R+LHAINY+ GE +L L+VH RL Sbjct: 70 IHTYAEDGVGLAAWKLFAMAADDNSLVSLDRLSRLLHAINYFAAEGEH--KLVLNVHNRL 127 Query: 122 LAAVNNNHGVAYRRILAALELPHERIVLQLPVVTPNQRWLLNYVLDNYRRNGFRLGVSAN 181 LAAV ++HG A+RR L +L LP ER V+Q+P + LL +V+ NYRRNGF + + A+ Sbjct: 128 LAAVTDDHGAAFRRALQSLGLPLERFVIQVPASANDDLALLLHVVGNYRRNGFAVSLQAS 187 Query: 182 SPLEALGLLDKVRPDLIKVDARELADPDSVALLLLRAAEQGVRIFFKRVESREVFERLQQ 241 P EA L+ PD +K+D R ++ L AA GV + +R+++ E ERLQ Sbjct: 188 DPAEAGALMAHALPDWLKLDMRRTWTDRQLSGLRASAANAGVTLIGRRLQNAESVERLQA 247 Query: 242 YGQALAQ------PIHAQG 254 G L Q P+ A G Sbjct: 248 AGIGLGQGAFAGAPVSAAG 266 >ref|XP_002540085.1| conserved hypothetical protein [Ricinus communis] gb|EEF22298.1| conserved hypothetical protein [Ricinus communis] Length = 178 Score = 179 bits (453), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 92/171 (53%), Positives = 120/171 (70%) Query: 96 MLHAINYYRQVGEDAPELHLSVHARLLAAVNNNHGVAYRRILAALELPHERIVLQLPVVT 155 MLHAIN++RQ G+ +L+L+VH RLL+AV++NHG A+RRIL ALELP +R+VLQLP T Sbjct: 1 MLHAINFFRQAGDSTADLYLNVHDRLLSAVSSNHGHAFRRILDALELPLDRVVLQLPAAT 60 Query: 156 PNQRWLLNYVLDNYRRNGFRLGVSANSPLEALGLLDKVRPDLIKVDARELADPDSVALLL 215 P Q WLLNYV DNYRRNGFR V+ANS + L +LD+ RPD++K+DAREL D + V LL Sbjct: 61 PQQGWLLNYVSDNYRRNGFRFAVNANSARDGLAVLDRSRPDVLKLDARELQDREGVLTLL 120 Query: 216 LRAAEQGVRIFFKRVESREVFERLQQYGQALAQPIHAQGYLWDVPAAHLPE 266 RAA V + KR+E+ + L++ A + QGYL D P + L E Sbjct: 121 RRAAAANVSVVCKRLETPQHLAALRELSAAAGVVLLVQGYLLDEPRSVLLE 171 >ref|YP_002005787.1| hypothetical protein RALTA_A1780 [Cupriavidus taiwanensis LMG 19424] emb|CAQ69722.1| conserved hypothetical protein [Cupriavidus taiwanensis LMG 19424] Length = 291 Score = 176 bits (447), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 105/255 (41%), Positives = 144/255 (56%), Gaps = 2/255 (0%) Query: 2 AYQALNAYLARLSKGATTASPVWLDEQGRAAGRFFNTSLTSAFQPVRSFDDGQVIACEAF 61 A AL YL L + +W D +G+ G+FFN SLTSAF+P+ + D QV+A E Sbjct: 10 AASALQRYLESLPRQPLADRQLWRDARGQVQGQFFNCSLTSAFEPLVTLADRQVVAHEGA 69 Query: 62 ARSHSAVDDGLHLWKLLDQAASDDESVELDRLCRMLHAINYYRQVGEDAPELHLSVHARL 121 +++ GL WKL AA D V LDRL R+LHAINY+ + +L L+VH RL Sbjct: 70 IHTYAEDGVGLAAWKLFAMAADDHTLVSLDRLSRLLHAINYF--AADGGHKLVLNVHNRL 127 Query: 122 LAAVNNNHGVAYRRILAALELPHERIVLQLPVVTPNQRWLLNYVLDNYRRNGFRLGVSAN 181 LAAV ++HG A+RR L +L LP ER V+Q+P + LL +V+ NYRRNGF + + A+ Sbjct: 128 LAAVADDHGAAFRRALQSLGLPLERFVIQVPASANDDLGLLLHVVGNYRRNGFAVSLQAS 187 Query: 182 SPLEALGLLDKVRPDLIKVDARELADPDSVALLLLRAAEQGVRIFFKRVESREVFERLQQ 241 P EA L+ PD +K+D R ++ L AA GV + +R++ E ERLQ Sbjct: 188 DPAEAGALMAHALPDWLKLDMRRTWTDRQLSGLRASAASAGVTLIGRRLQDTESIERLQA 247 Query: 242 YGQALAQPIHAQGYL 256 G L Q A G + Sbjct: 248 AGIGLGQGAFAGGLV 262 >ref|ZP_08503922.1| Putative signaling protein EAL [Methyloversatilis universalis FAM5] gb|EGK72699.1| Putative signaling protein EAL [Methyloversatilis universalis FAM5] Length = 274 Score = 174 bits (441), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 104/253 (41%), Positives = 142/253 (56%), Gaps = 2/253 (0%) Query: 2 AYQALNAYLARLSKGATTASPVWLDEQGRAAGRFFNTSLTSAFQPVRSFDDGQVIACEAF 61 A AL YL L + A VW +GR AGRF +SL+S FQP+ D G+ I EAF Sbjct: 7 ARSALERYLHDLPRSADGGHAVWSTPEGRVAGRFLRSSLSSVFQPLIHLDRGREIGHEAF 66 Query: 62 ARSHSAVDDGLHLWKLLDQAASDDESVELDRLCRMLHAINYYRQVGEDAPELHLSVHARL 121 RS L W L AASD+ +ELDRLCR LH +NY+ + G+DA L L+VH RL Sbjct: 67 IRSFDETGGDLSPWNLFANAASDEALIELDRLCRTLHVLNYFGRAGDDA-SLFLNVHGRL 125 Query: 122 LAAVNNNHGVAYRRILAALELPHERIVLQLPVVTPNQRWLLNYVLDNYRRNGFRLGVSAN 181 + AV +HG A+ R+L+AL++ RIV++ P + LL YVL NYR NG+R+GV+ Sbjct: 126 MLAVGEDHGSAFGRVLSALDIERRRIVIESPEAMSSDLSLLAYVLLNYRYNGYRVGVNLA 185 Query: 182 SPLEALGLLDKVRPDLIKVDARELADPDSVALLLLRAAEQGVRIFFKRVESREVFERLQQ 241 + L+ VRPD +K+D ++ A G+++ KRV + RL++ Sbjct: 186 RGEQIGELVRHVRPDFVKLDGGRDDTLRDISRHADLCARHGIQLIVKRVGQDGLAPRLRE 245 Query: 242 YGQALAQPIHAQG 254 G ALAQ HA G Sbjct: 246 AGVALAQG-HALG 257 >ref|YP_296180.1| hypothetical protein Reut_A1972 [Ralstonia eutropha JMP134] gb|AAZ61336.1| conserved hypothetical protein [Ralstonia eutropha JMP134] Length = 280 Score = 172 bits (436), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 106/268 (39%), Positives = 150/268 (55%), Gaps = 4/268 (1%) Query: 3 YQALNAYLARLSKGATTASPVWLDEQGRAAGRFFNTSLTSAFQPVRSFDDGQVIACEAFA 62 + AL YL L + +W D +G+ G+FFN SLTSAF+P+ + D +V+A E Sbjct: 13 WGALERYLETLPRQPLADRQLWRDARGQVQGQFFNCSLTSAFEPLVTLADREVVAHEGAI 72 Query: 63 RSHSAVDDGLHLWKLLDQAASDDESVELDRLCRMLHAINYYRQVGEDAPELHLSVHARLL 122 +++ GL WKL AA D V LDRL R++HAINY+ + A +L L+VH RLL Sbjct: 73 HTYAEDGVGLAAWKLFAMAADDATLVSLDRLSRLVHAINYF--AADGAHKLVLNVHNRLL 130 Query: 123 AAVNNNHGVAYRRILAALELPHERIVLQLPVVTPNQRWLLNYVLDNYRRNGFRLGVSANS 182 AAV ++HG A+RR L +L LP +R V+Q+P + LL +V+ NYRRNGF + + A+ Sbjct: 131 AAVADDHGSAFRRALQSLGLPVDRFVIQVPASANDDLPLLLHVVGNYRRNGFAVSLQASD 190 Query: 183 PLEALGLLDKVRPDLIKVDARELADPDSVALLLLRAAEQGVRIFFKRVESREVFERLQQY 242 P EA L+ PD +K+D R +A L AA GV + +R++ ERLQ Sbjct: 191 PAEAGALMAHALPDWLKLDMRRTWTDRQLAGLGASAANAGVTLIGRRLQDASSVERLQAA 250 Query: 243 GQALAQPIHAQGYLWDVPAAHLPETFLA 270 G L Q A G + PA+ P L+ Sbjct: 251 GIGLGQGAFAGGLM--TPASLRPARTLS 276 >ref|YP_583526.1| putative signalling protein EAL [Cupriavidus metallidurans CH34] gb|ABF08257.1| putative signalling protein EAL [Cupriavidus metallidurans CH34] Length = 275 Score = 168 bits (425), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 105/267 (39%), Positives = 147/267 (55%), Gaps = 10/267 (3%) Query: 5 ALNAYLARLSKGATTASPVWLDEQGRAAGRFFNTSLTSAFQPVRSFDDGQVIACEAFARS 64 AL YL L + +W D G+ G++F SLTSAF+P+ + D V+A E R+ Sbjct: 6 ALERYLQTLPREPVPGRELWRDVNGQVQGQYFQCSLTSAFEPLVTLADRGVVAHEGSIRT 65 Query: 65 HSAVDDGLHLWKLLDQAASDDESVELDRLCRMLHAINYYRQVGEDAPELHLSVHARLLAA 124 ++ GL WKL AA D V LDRL R++HAINY+ GE +L L+VH RLLAA Sbjct: 66 YAEDGVGLAAWKLFAMAADDTSLVSLDRLTRLVHAINYFAADGEH--KLVLNVHNRLLAA 123 Query: 125 VNNNHGVAYRRILAALELPHERIVLQLPVVTPNQRWLLNYVLDNYRRNGFRLGVSANSPL 184 V ++HG A+RR L +L LP R V+Q+P + LL +V+ NYRRNGF + + A+ P Sbjct: 124 VADDHGAAFRRALESLGLPIGRFVIQVPASANDDLPLLLHVVGNYRRNGFAVSLQASDPA 183 Query: 185 EALGLLDKVRPDLIKVDARELADPDSVALLLLRAAEQGVRIFFKRVESREVFERLQQYGQ 244 EA L+ PD +K+D R ++ L A GV + +R++ E ERLQ G Sbjct: 184 EAGALMAHAMPDWLKLDMRRTWTDRQLSGLRASAEGAGVTLIGRRLQDDEAVERLQNAGI 243 Query: 245 ALAQ-------PIHAQG-YLWDVPAAH 263 L Q P+ A+G ++ VP H Sbjct: 244 VLGQGRVIADEPVPARGLHVRAVPEQH 270