BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0168.p (266 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775063.1| XRE family transcription regulator protein [... 535 e-150 ref|YP_004753689.1| hypothetical protein CFU_3041 [Collimonas fu... 286 2e-75 ref|ZP_02373067.1| COG1396:Predicted transcriptional regulators ... 252 3e-65 ref|YP_001629099.1| transcriptional regulator [Bordetella petrii... 252 4e-65 ref|YP_369993.1| XRE family transcriptional regulator [Burkholde... 251 7e-65 ref|YP_001858403.1| XRE family transcriptional regulator [Burkho... 251 7e-65 ref|YP_003976610.1| transcriptional regulator 1 [Achromobacter x... 250 1e-64 ref|NP_771312.1| DNA-binding protein [Bradyrhizobium japonicum U... 250 1e-64 ref|YP_004418563.1| transcriptional regulator [Pusillimonas sp. ... 246 3e-63 ref|ZP_08484268.1| helix-turn-helix domain protein [Methylomicro... 246 3e-63 >ref|YP_003775063.1| XRE family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ63155.1| XRE family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 266 Score = 535 bits (1377), Expect = e-150, Method: Compositional matrix adjust. Identities = 266/266 (100%), Positives = 266/266 (100%) Query: 1 MEPDLARRALGEFIKTQRQQMAPADAGLPAMALAGRRRTPGLRREEVAQLCGISVTWYTW 60 MEPDLARRALGEFIKTQRQQMAPADAGLPAMALAGRRRTPGLRREEVAQLCGISVTWYTW Sbjct: 1 MEPDLARRALGEFIKTQRQQMAPADAGLPAMALAGRRRTPGLRREEVAQLCGISVTWYTW 60 Query: 61 IEQGRTESVSPQALARIADALRLPRAKRTYLFELAGKKDPAAPDQHEESSIAPEILEVVS 120 IEQGRTESVSPQALARIADALRLPRAKRTYLFELAGKKDPAAPDQHEESSIAPEILEVVS Sbjct: 61 IEQGRTESVSPQALARIADALRLPRAKRTYLFELAGKKDPAAPDQHEESSIAPEILEVVS 120 Query: 121 QFRAPAYLLDRTWNTVAWNPAARKLFGGWLEDRSTRPNLLRFMFASEQARSLTVDWEQRA 180 QFRAPAYLLDRTWNTVAWNPAARKLFGGWLEDRSTRPNLLRFMFASEQARSLTVDWEQRA Sbjct: 121 QFRAPAYLLDRTWNTVAWNPAARKLFGGWLEDRSTRPNLLRFMFASEQARSLTVDWEQRA 180 Query: 181 HRLVAEFRADCAALLDDPAVQRLVDELSACNALFQRAWRLQDVVAREGGERRFRTPQGTE 240 HRLVAEFRADCAALLDDPAVQRLVDELSACNALFQRAWRLQDVVAREGGERRFRTPQGTE Sbjct: 181 HRLVAEFRADCAALLDDPAVQRLVDELSACNALFQRAWRLQDVVAREGGERRFRTPQGTE 240 Query: 241 LRYLQVNFRVANRPDLKLVTLMPAAD 266 LRYLQVNFRVANRPDLKLVTLMPAAD Sbjct: 241 LRYLQVNFRVANRPDLKLVTLMPAAD 266 >ref|YP_004753689.1| hypothetical protein CFU_3041 [Collimonas fungivorans Ter331] gb|AEK62866.1| hypothetical protein CFU_3041 [Collimonas fungivorans Ter331] Length = 260 Score = 286 bits (733), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 159/265 (60%), Positives = 186/265 (70%), Gaps = 8/265 (3%) Query: 1 MEPDLARRALGEFIKTQRQQMAPADAGLPAMALAG--RRRTPGLRREEVAQLCGISVTWY 58 M+ R+ALGEFI+TQR Q+ A A+ L G RRRTPGLRREEVAQLC ISVTWY Sbjct: 1 MDQTGKRKALGEFIRTQRIQLPTA-----ALRLGGSTRRRTPGLRREEVAQLCDISVTWY 55 Query: 59 TWIEQGRTESVSPQALARIADALRLPRAKRTYLFELAGKKDPAAPDQHEESSIAPEILEV 118 TWIEQGRT SVS ALARIA+AL+L RAKR YLFEL+GKKDP A D + I EIL V Sbjct: 56 TWIEQGRTVSVSAAALARIAEALQLSRAKRAYLFELSGKKDPQAQDGLAQE-IPAEILAV 114 Query: 119 VSQFRAPAYLLDRTWNTVAWNPAARKLFGGWLEDRSTRPNLLRFMFASEQARSLTVDWEQ 178 + PAYLLDR WN VAWN AA+ LF GWL+ ++ NLL + + + A +L DWEQ Sbjct: 115 TDTIKTPAYLLDRHWNAVAWNRAAKTLFVGWLDKKTASRNLLEYTYCTADAANLISDWEQ 174 Query: 179 RAHRLVAEFRADCAALLDDPAVQRLVDELSACNALFQRAWRLQDVVAREGGERRFRTPQG 238 RA RL AEFRADC LD+P + LV LSA ++ F+RAW L DVV +EGGERRF P Sbjct: 175 RASRLAAEFRADCGMYLDEPEIAELVARLSAASSAFKRAWNLHDVVEKEGGERRFSHPTL 234 Query: 239 TELRYLQVNFRVANRPDLKLVTLMP 263 +L Y QVN RVANR +LKLV L+P Sbjct: 235 GQLSYRQVNLRVANRLELKLVMLLP 259 >ref|ZP_02373067.1| COG1396:Predicted transcriptional regulators [Burkholderia thailandensis TXDOH] Length = 271 Score = 252 bits (644), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 139/255 (54%), Positives = 165/255 (64%), Gaps = 4/255 (1%) Query: 8 RALGEFIKTQRQQMAPADAGLPAMALAGRRRTPGLRREEVAQLCGISVTWYTWIEQGRTE 67 RALGEFI+ R+++ P GLP RRRTPGLRREEVAQLCG+S TWYTWIEQGR Sbjct: 17 RALGEFIRAHRERLTPQAVGLPP---GPRRRTPGLRREEVAQLCGVSPTWYTWIEQGREV 73 Query: 68 SVSPQALARIADALRLPRAKRTYLFELAGKKDPAAPDQHEESSIAPEILEVVSQFRAPAY 127 S S ALARIA ALRL RA+R YLFELA ++DPA P + S + ++ V PAY Sbjct: 74 SASADALARIAVALRLSRAERAYLFELAAQRDPAEP-EFAASDVPDTLVAAVKLIATPAY 132 Query: 128 LLDRTWNTVAWNPAARKLFGGWLEDRSTRPNLLRFMFASEQARSLTVDWEQRAHRLVAEF 187 +LDR WN +AWN A LF GWL+ NLLRF FAS AR+L VDWE RA RLVAEF Sbjct: 133 VLDRQWNALAWNDPAAALFTGWLDGERDERNLLRFTFASPAARALIVDWETRARRLVAEF 192 Query: 188 RADCAALLDDPAVQRLVDELSACNALFQRAWRLQDVVAREGGERRFRTPQGTELRYLQVN 247 RAD L+D + L+D L A + F W QDV REGGER F P+ + Y Q+ Sbjct: 193 RADTIRHLNDAPTRALIDSLLAESDAFAHYWASQDVGEREGGERAFDHPREGRVVYQQMT 252 Query: 248 FRVANRPDLKLVTLM 262 + A+R DLKLV L+ Sbjct: 253 LKPAHRDDLKLVVLV 267 >ref|YP_001629099.1| transcriptional regulator [Bordetella petrii DSM 12804] emb|CAP40827.1| predicted transcriptional regulator [Bordetella petrii] Length = 309 Score = 252 bits (644), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 143/260 (55%), Positives = 168/260 (64%), Gaps = 7/260 (2%) Query: 7 RRALGEFIKTQRQQMAPADAGLPAMALAGRRRTPGLRREEVAQLCGISVTWYTWIEQGRT 66 R ALGEF++ R ++ P AGLP RRRTPGLRREEVAQLCGISVTWYTWIEQGR Sbjct: 56 RHALGEFVRAARARITPQMAGLPE---GTRRRTPGLRREEVAQLCGISVTWYTWIEQGRE 112 Query: 67 ESVSPQALARIADALRLPRAKRTYLFELAGKKDPAAPDQHEESSIAPEIL-EVVSQFRAP 125 SVSP ARIA L+L RA+R YLFELA DP P +++S AP +L E V AP Sbjct: 113 VSVSPAVWARIAGVLQLARAERAYLFELAECADPQHP--RDDASEAPGLLRECVDAVNAP 170 Query: 126 AYLLDRTWNTVAWNPAARKLFGGWLEDRSTRPNLLRFMFASEQARSLTVDWEQRAHRLVA 185 AY+LDR WN + N R LF W R RPNLLR++F AR L VDW+QRA R+VA Sbjct: 171 AYVLDRAWNVLVHNGPMRDLFDDW-PVRDPRPNLLRYIFLDPAARQLVVDWDQRARRVVA 229 Query: 186 EFRADCAALLDDPAVQRLVDELSACNALFQRAWRLQDVVAREGGERRFRTPQGTELRYLQ 245 EFRAD A LD+P V L+DEL+ + +F W VV REGG R F+ P+ L Y Q Sbjct: 230 EFRADAGAHLDEPDVLALLDELNRDSEVFAHWWTRHAVVEREGGLREFQHPRRGRLAYRQ 289 Query: 246 VNFRVANRPDLKLVTLMPAA 265 FR+A PDLKLV L+ A Sbjct: 290 TTFRLATHPDLKLVMLLEGA 309 >ref|YP_369993.1| XRE family transcriptional regulator [Burkholderia sp. 383] gb|ABB09349.1| transcriptional regulator, XRE family [Burkholderia sp. 383] Length = 269 Score = 251 bits (642), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 137/255 (53%), Positives = 164/255 (64%), Gaps = 5/255 (1%) Query: 8 RALGEFIKTQRQQMAPADAGLPAMALAGRRRTPGLRREEVAQLCGISVTWYTWIEQGRTE 67 RALGEFI+ R++++P GLP RRRTPGLRREEVAQLCG+S TWYTWIEQGR Sbjct: 18 RALGEFIRAHRERLSPQAVGLPP---GPRRRTPGLRREEVAQLCGVSPTWYTWIEQGRPV 74 Query: 68 SVSPQALARIADALRLPRAKRTYLFELAGKKDPAAPDQHEESSIAPEILEVVSQFRAPAY 127 S S ALARIA AL+L +A+R YLFELA ++DPA PD + P + V+ PAY Sbjct: 75 SASADALARIAVALQLSKAERAYLFELAAQRDPAEPDV-AGGDLPPTLAATVAAIATPAY 133 Query: 128 LLDRTWNTVAWNPAARKLFGGWLEDRSTRPNLLRFMFASEQARSLTVDWEQRAHRLVAEF 187 +LDR WN +AWN A LF GWL+ R NLLRF F S AR+L VDWE RA RL AEF Sbjct: 134 VLDRQWNALAWNTPAAALFSGWLDGEHDR-NLLRFTFMSPAARTLIVDWETRARRLAAEF 192 Query: 188 RADCAALLDDPAVQRLVDELSACNALFQRAWRLQDVVAREGGERRFRTPQGTELRYLQVN 247 RAD L D + L+D L+A + F + W QDV REGG R F P L Y Q+ Sbjct: 193 RADSIRHLTDAPTRALIDALTAGSDAFAQYWASQDVFEREGGLREFDHPADGRLVYQQIT 252 Query: 248 FRVANRPDLKLVTLM 262 + A+R DLKLV L+ Sbjct: 253 LKPAHREDLKLVVLV 267 >ref|YP_001858403.1| XRE family transcriptional regulator [Burkholderia phymatum STM815] gb|ACC71357.1| transcriptional regulator, XRE family [Burkholderia phymatum STM815] Length = 270 Score = 251 bits (641), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 139/256 (54%), Positives = 172/256 (67%), Gaps = 7/256 (2%) Query: 8 RALGEFIKTQRQQMAPADAGLPAMALAGRRRTPGLRREEVAQLCGISVTWYTWIEQGRTE 67 RALG+FI+ R++++P GLP RRRTPGLRREEVAQLCG+S TWYTWIEQGR Sbjct: 19 RALGDFIRAHRERLSPQAVGLPP---GPRRRTPGLRREEVAQLCGVSPTWYTWIEQGRPV 75 Query: 68 SVSPQALARIADALRLPRAKRTYLFELAGKKDPAAPDQHEESSIAPE-ILEVVSQFRAPA 126 S S +ALARIA AL+L RA+R YLFELA ++DPA PD +S AP +L+ V APA Sbjct: 76 SASAEALARIAVALQLSRAERAYLFELAAQRDPAEPD--PAASDAPAMLLKTVQLVNAPA 133 Query: 127 YLLDRTWNTVAWNPAARKLFGGWLEDRSTRPNLLRFMFASEQARSLTVDWEQRAHRLVAE 186 Y+LDR + +AWN A LF GWL+ R NLLR+ F S QAR L VDWE RA RL AE Sbjct: 134 YVLDRQFTALAWNAPASDLFVGWLDGEHDR-NLLRYTFLSPQARRLIVDWEIRARRLAAE 192 Query: 187 FRADCAALLDDPAVQRLVDELSACNALFQRAWRLQDVVAREGGERRFRTPQGTELRYLQV 246 +RAD +D + L+D LSA + F R W QDV REGG+R+F P+ + Y Q+ Sbjct: 193 YRADSIRHQNDAPTRSLIDSLSAASDEFARFWASQDVNEREGGQRQFDHPRDGHVVYHQI 252 Query: 247 NFRVANRPDLKLVTLM 262 F+ A+R DLKLV L+ Sbjct: 253 TFKPAHREDLKLVVLV 268 >ref|YP_003976610.1| transcriptional regulator 1 [Achromobacter xylosoxidans A8] gb|ADP13895.1| transcriptional regulator 1 [Achromobacter xylosoxidans A8] Length = 272 Score = 250 bits (639), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 139/263 (52%), Positives = 171/263 (65%), Gaps = 8/263 (3%) Query: 5 LARRALGEFIKTQRQQMAPADAGLPAMALAGRRRTPGLRREEVAQLCGISVTWYTWIEQG 64 L R+ALGEF+++ R ++ P AGLP RRRTPGLRREEVAQLCGISVTWYTWIEQG Sbjct: 17 LRRQALGEFVRSARSRITPQMAGLPE---GMRRRTPGLRREEVAQLCGISVTWYTWIEQG 73 Query: 65 RTESVSPQALARIADALRLPRAKRTYLFELAGKKDPAAPDQHEESSIAPEIL-EVVSQFR 123 R SVSP +RIA L+L RA+R YLF+LA D A P + + AP L E V+ Sbjct: 74 REVSVSPSVWSRIAGVLQLARAERAYLFDLA---DCADPQHGRDDAGAPGPLQECVNAIN 130 Query: 124 APAYLLDRTWNTVAWNPAARKLFGGWLEDRSTRPNLLRFMFASEQARSLTVDWEQRAHRL 183 APAY+LDR WN +A+N R+LF W R PNLLR++F AR L VDW+QRA R+ Sbjct: 131 APAYVLDRAWNVLAYNEPLRELFDNW-PARDAEPNLLRYIFLDPAARELVVDWDQRARRV 189 Query: 184 VAEFRADCAALLDDPAVQRLVDELSACNALFQRAWRLQDVVAREGGERRFRTPQGTELRY 243 VAEFRAD A LD+P V L+D L+ + +F W VV REGG R F+ P +L Y Sbjct: 190 VAEFRADAGAHLDEPGVLALLDSLNRQSPVFAHWWTRHAVVEREGGLREFQHPGRGKLAY 249 Query: 244 LQVNFRVANRPDLKLVTLMPAAD 266 Q+ FR+A PDLKLV L+ + Sbjct: 250 QQITFRLATHPDLKLVMLLGGGE 272 >ref|NP_771312.1| DNA-binding protein [Bradyrhizobium japonicum USDA 110] dbj|BAC49937.1| bll4672 [Bradyrhizobium japonicum USDA 110] Length = 282 Score = 250 bits (639), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 135/257 (52%), Positives = 168/257 (65%), Gaps = 8/257 (3%) Query: 9 ALGEFIKTQRQQMAPADAGLPAMALAGRRRTPGLRREEVAQLCGISVTWYTWIEQGRTES 68 +L F++ R++ +PA+ GL A RRRTPGLRREEVAQLCG+S TWYTWIEQGR S Sbjct: 27 SLSAFLRALRERQSPAEFGLAA---GPRRRTPGLRREEVAQLCGLSATWYTWIEQGRDVS 83 Query: 69 VSPQALARIADALRLPRAKRTYLFELAGKKDPAAPDQHEESSIAPE-ILEVVSQFRAPAY 127 VS LAR+A LRL RA+R YLFELAGK+DP P ++ PE +L V PAY Sbjct: 84 VSASTLARLARGLRLSRAERGYLFELAGKRDPERPGNRDDP---PEGVLACVDAIDGPAY 140 Query: 128 LLDRTWNTVAWNPAARKLFGGWLEDRSTRPNLLRFMFASEQARSLTVDWEQRAHRLVAEF 187 +LDRTW+ WN A +LF GWL D NLLR++F +AR+L +DW RAHR+VAEF Sbjct: 141 ILDRTWSARRWNAKASRLFAGWL-DADGEKNLLRYIFLRPEARTLILDWTSRAHRVVAEF 199 Query: 188 RADCAALLDDPAVQRLVDELSACNALFQRAWRLQDVVAREGGERRFRTPQGTELRYLQVN 247 RA DDP ++RLVDEL ++ F+R W Q V+AREGGER F P LRY QV+ Sbjct: 200 RAAVTGYADDPDIRRLVDELRIGSSDFERCWETQGVLAREGGERAFDHPTMGLLRYQQVS 259 Query: 248 FRVANRPDLKLVTLMPA 264 +A PD +L L+ A Sbjct: 260 LSLAGWPDYRLTMLLSA 276 >ref|YP_004418563.1| transcriptional regulator [Pusillimonas sp. T7-7] gb|AEC21939.1| transcriptional regulator [Pusillimonas sp. T7-7] Length = 285 Score = 246 bits (628), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 136/259 (52%), Positives = 164/259 (63%), Gaps = 11/259 (4%) Query: 7 RRALGEFIKTQRQQMAPADAGLPAMALAGRRRTPGLRREEVAQLCGISVTWYTWIEQGRT 66 R+ALG+F++ R ++ P GLP RRRTPGLRREEVAQLCGISVTWYTWIEQGR Sbjct: 20 RKALGDFLRQARGRVQPESVGLPPGI---RRRTPGLRREEVAQLCGISVTWYTWIEQGRD 76 Query: 67 ESVSPQALARIADALRLPRAKRTYLFELAGKKDPAAPDQHEESSIAP---EILEVVSQFR 123 SVS AR+A L L RA+R YLFELA DP +H + P + + V Sbjct: 77 VSVSAGVWARLASVLGLARAERHYLFELAECADP----EHGHDYVTPLPTYLADCVHSIT 132 Query: 124 APAYLLDRTWNTVAWNPAARKLFGGWLEDRSTRPNLLRFMFASEQARSLTVDWEQRAHRL 183 APAY+LDR WN +A N +LF GW DR PNLLR++F+ AR L VDWEQRA R+ Sbjct: 133 APAYILDRCWNVLARNEPLLRLFDGW-PDRDGSPNLLRYIFSDPAARDLVVDWEQRASRV 191 Query: 184 VAEFRADCAALLDDPAVQRLVDELSACNALFQRAWRLQDVVAREGGERRFRTPQGTELRY 243 VAEFRAD AA D+P V+ ++D L + +F W VV REGG R F PQ LRY Sbjct: 192 VAEFRADAAAHADEPDVRAVLDGLQQASQVFAHWWTRHAVVDREGGLREFNHPQHGILRY 251 Query: 244 LQVNFRVANRPDLKLVTLM 262 Q+ FR+A RPD KLV L+ Sbjct: 252 QQITFRLATRPDCKLVMLL 270 >ref|ZP_08484268.1| helix-turn-helix domain protein [Methylomicrobium album BG8] gb|EGL04886.1| helix-turn-helix domain protein [Methylomicrobium album BG8] Length = 278 Score = 246 bits (627), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 132/260 (50%), Positives = 169/260 (65%), Gaps = 10/260 (3%) Query: 9 ALGEFIKTQRQQMAPADAGLPAMALAGRRRTPGLRREEVAQLCGISVTWYTWIEQGRTES 68 ALG+F++ R+++AP D GL + RRRT GLRREEVA LCGIS TWYTW+EQGRT + Sbjct: 16 ALGDFLRAARERLAPEDFGL---SKGQRRRTKGLRREEVADLCGISTTWYTWMEQGRTTA 72 Query: 69 VSPQALARIADALRLPRAKRTYLFELAGKKDPAAPDQHEESSIAPEILEVVSQFRAPAYL 128 +S LA +A LRL A+R YLF+LAG+ DPA P + E E L V+ R+PAY+ Sbjct: 73 ISVATLAELATGLRLTEAERAYLFQLAGRTDPALPHEKHEGPAPYEAL--VAAIRSPAYI 130 Query: 129 LDRTWNTVAWNPAARKLFGGWL-----EDRSTRPNLLRFMFASEQARSLTVDWEQRAHRL 183 LDR W+ +AWN AA KLF WL + PNLLR++F A +L +DWE+RA RL Sbjct: 131 LDRYWDAIAWNQAAAKLFCDWLVSPLGQREKFAPNLLRYVFLHSNAPNLILDWEERAWRL 190 Query: 184 VAEFRADCAALLDDPAVQRLVDELSACNALFQRAWRLQDVVAREGGERRFRTPQGTELRY 243 VAE+RAD A L D Q LVDEL A + +F+ AWR Q V+AREGG R F P+ + Y Sbjct: 191 VAEYRADSAGLRHDAVHQALVDELQAVSPVFKEAWRSQKVLAREGGSRGFLLPKEGKRFY 250 Query: 244 LQVNFRVANRPDLKLVTLMP 263 Q R+A + ++KLV L P Sbjct: 251 WQYTLRMAQQNEIKLVVLHP 270