BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0153.p (420 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775049.1| branched-chain amino acid ABC transporter pe... 797 0.0 ref|YP_982653.1| extracellular ligand-binding receptor [Polaromo... 413 e-113 ref|YP_549162.1| extracellular ligand-binding receptor [Polaromo... 405 e-111 ref|YP_003447741.1| branched-chain amino acid transport system s... 402 e-110 ref|YP_420841.1| ABC-type branched-chain amino acid transport sy... 376 e-102 ref|YP_004415296.1| branched-chain amino acid-binding protein [P... 374 e-101 ref|ZP_08626969.1| ABC transporter substrate-binding protein [Br... 370 e-100 ref|YP_003692240.1| extracellular ligand-binding receptor [Stark... 369 e-100 ref|YP_425654.1| twin-arginine translocation pathway signal [Rho... 368 e-100 pdb|3I45|A Chain A, Crystal Structure Of Putative Twin-Arginine ... 365 9e-99 >ref|YP_003775049.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ63141.1| ABC-type branched-chain amino acid transport systems periplasmic component, protein [Herbaspirillum seropedicae SmR1] Length = 413 Score = 797 bits (2058), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/413 (98%), Positives = 409/413 (99%), Gaps = 2/413 (0%) Query: 8 HRKQSLHSPRSRWTLLLGLAVALALALPWGPSHAAEAIRIGEINSRHRLSTAGQAYRNGL 67 HRKQSLHSPRSRWTLLL +A ALALPWGPSHAAEAIRIGEINSRHRLSTAGQAYRNGL Sbjct: 3 HRKQSLHSPRSRWTLLL--GLAAALALPWGPSHAAEAIRIGEINSRHRLSTAGQAYRNGL 60 Query: 68 ALALEQINAAGGVGGRPLQLVVREDDGDADQAARNARALISQDHVEVLTGSMLSDVALAV 127 ALALEQINAAGGVGGRPLQLVVREDDGDADQAARNARALISQDHVEVLTGSMLSDVALAV Sbjct: 61 ALALEQINAAGGVGGRPLQLVVREDDGDADQAARNARALISQDHVEVLTGSMLSDVALAV 120 Query: 128 SREAARGRTVLVVGDALSDAITLDKGNRYTFRVRPSTYMQAAMLAEQAARLPGRRWAVVA 187 SREAARGRTVLVVGDALSDAITLDKGNRYTFRVRPSTYMQAAMLAEQAARLPGRRWAVVA Sbjct: 121 SREAARGRTVLVVGDALSDAITLDKGNRYTFRVRPSTYMQAAMLAEQAARLPGRRWAVVA 180 Query: 188 PNYEYGQSAVASFKLLLKQARPDVEFVSDQWPALGKIKADDVARAIRQSRPDGIFNATFG 247 PNYEYGQSAVASFKLLLKQARPDVEFVSDQWPALGKIKADDVARAIRQSRPDGIFNATFG Sbjct: 181 PNYEYGQSAVASFKLLLKQARPDVEFVSDQWPALGKIKADDVARAIRQSRPDGIFNATFG 240 Query: 248 EDLQKFVQAGNRQQLFEGVRVVSMASAGAPSLDPSQSEAIRDWLAIGYPWDQVSLPEHQR 307 EDLQKFVQAGNRQQLFEGVRVVSMASAGAPSLDPSQSEAIRDWLAIGYPWDQVSLPEHQR Sbjct: 241 EDLQKFVQAGNRQQLFEGVRVVSMASAGAPSLDPSQSEAIRDWLAIGYPWDQVSLPEHQR 300 Query: 308 FLEAYLKRFSERPQLSAVFGYTTMMAIAAGLKKSEGGDGEVLVEAMRGLQFGSPLGPVSF 367 FLEAYLKRFSERPQLSAVFGYTTMMAIAAGLKKSEGGDGEVLVEAMRGLQFGSPLGPVSF Sbjct: 301 FLEAYLKRFSERPQLSAVFGYTTMMAIAAGLKKSEGGDGEVLVEAMRGLQFGSPLGPVSF 360 Query: 368 RALDQQASLGAFVGLVSQKDGRSSMRDWRYLDGAAYLPPPAYVRSRRPASASK 420 RALDQQASLGAFVGLVSQKDGRSSMRDWRYLDGAAYLPPPAYVRSRRPASASK Sbjct: 361 RALDQQASLGAFVGLVSQKDGRSSMRDWRYLDGAAYLPPPAYVRSRRPASASK 413 >ref|YP_982653.1| extracellular ligand-binding receptor [Polaromonas naphthalenivorans CJ2] gb|ABM37732.1| amino acid/amide ABC transporter substrate-binding protein, HAAT family [Polaromonas naphthalenivorans CJ2] Length = 411 Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust. Identities = 204/399 (51%), Positives = 276/399 (69%), Gaps = 2/399 (0%) Query: 22 LLLGLAVALALALPWGPSHAAEAIRIGEINSRHRLSTAGQAYRNGLALALEQINAAGGVG 81 +LLG V LA A+ + S + + I+IGEINS + Q YR G LA+E+IN +GG+ Sbjct: 15 VLLG-GVLLATAM-FAQSASNKPIKIGEINSYSTMPQFTQPYRQGWQLAVEEINLSGGLL 72 Query: 82 GRPLQLVVREDDGDADQAARNARALISQDHVEVLTGSMLSDVALAVSREAARGRTVLVVG 141 GR ++++ R+D G ++A R+A L S++ V+VL G LS+V LA++ A + R + + Sbjct: 73 GRKVEVIARDDAGKPEEALRHAIELTSREKVDVLAGGYLSNVGLALADHAQKNRRLYIAS 132 Query: 142 DALSDAITLDKGNRYTFRVRPSTYMQAAMLAEQAARLPGRRWAVVAPNYEYGQSAVASFK 201 + L+DAI DKGNRYTFR+RPSTYMQAAML E+AA++P RRWA +APNYEYGQSAVASF+ Sbjct: 133 EPLTDAIVWDKGNRYTFRLRPSTYMQAAMLVEEAAKMPARRWATIAPNYEYGQSAVASFR 192 Query: 202 LLLKQARPDVEFVSDQWPALGKIKADDVARAIRQSRPDGIFNATFGEDLQKFVQAGNRQQ 261 LLK RPDVEFV +QWPALGK++A +A+ QS+PD IFN TFG DL K V+ GN++ Sbjct: 193 ELLKARRPDVEFVGEQWPALGKLEAGTALQAMMQSKPDAIFNVTFGADLAKLVREGNQRG 252 Query: 262 LFEGVRVVSMASAGAPSLDPSQSEAIRDWLAIGYPWDQVSLPEHQRFLEAYLKRFSERPQ 321 +F V VVSM S LD + E + W+ GYPWDQ+ EH F Y +RF E P+ Sbjct: 253 IFPRVPVVSMLSGEPEYLDVLKDETPKGWIVTGYPWDQIDSQEHASFAANYYRRFKEYPK 312 Query: 322 LSAVFGYTTMMAIAAGLKKSEGGDGEVLVEAMRGLQFGSPLGPVSFRALDQQASLGAFVG 381 + +V GY+TM AI AG+KK+ D E LV +RGL+F +P GP FRA+DQQ+++GA+VG Sbjct: 313 VGSVVGYSTMQAIFAGIKKANSLDNEKLVVTLRGLKFSTPFGPAEFRAIDQQSTMGAYVG 372 Query: 382 LVSQKDGRSSMRDWRYLDGAAYLPPPAYVRSRRPASASK 420 + + + +M +WRY DG AYLP AYV++RRPA A K Sbjct: 373 KLDMRGNKGTMVNWRYADGKAYLPSDAYVKARRPADAMK 411 >ref|YP_549162.1| extracellular ligand-binding receptor [Polaromonas sp. JS666] gb|ABE44264.1| amino acid/amide ABC transporter substrate-binding protein, HAAT family [Polaromonas sp. JS666] Length = 405 Score = 405 bits (1041), Expect = e-111, Method: Compositional matrix adjust. Identities = 195/376 (51%), Positives = 257/376 (68%) Query: 45 IRIGEINSRHRLSTAGQAYRNGLALALEQINAAGGVGGRPLQLVVREDDGDADQAARNAR 104 I+IGEINS + Q YR G LA+E++N AGG+ GR ++++ R+D G ++A R+A Sbjct: 30 IKIGEINSYSTIPQFTQPYRQGWQLAVEEVNVAGGLLGRKVEVIARDDAGKPEEALRHAI 89 Query: 105 ALISQDHVEVLTGSMLSDVALAVSREAARGRTVLVVGDALSDAITLDKGNRYTFRVRPST 164 L S++ V+VL G LS+V LA++ A + + V V + L+DA+ DKGNRYTFR+RPST Sbjct: 90 ELTSKEKVDVLAGGFLSNVGLALADHAQKNKRVYVASEPLTDALVWDKGNRYTFRLRPST 149 Query: 165 YMQAAMLAEQAARLPGRRWAVVAPNYEYGQSAVASFKLLLKQARPDVEFVSDQWPALGKI 224 YMQAAML E+AA+LP RRWA +APNYEYGQSAVASFK LLK RPDVEFV +QWPALGK+ Sbjct: 150 YMQAAMLVEEAAKLPARRWATIAPNYEYGQSAVASFKELLKARRPDVEFVGEQWPALGKL 209 Query: 225 KADDVARAIRQSRPDGIFNATFGEDLQKFVQAGNRQQLFEGVRVVSMASAGAPSLDPSQS 284 A +A QS+PD IFN TFG DL K V+ GN++ +F VVS+ S LD + Sbjct: 210 DAGTTLQATMQSKPDAIFNVTFGADLAKLVREGNQRGIFPKTPVVSLLSGEPEYLDVLKD 269 Query: 285 EAIRDWLAIGYPWDQVSLPEHQRFLEAYLKRFSERPQLSAVFGYTTMMAIAAGLKKSEGG 344 E + W+ GYPWDQ+ EH F Y +RF+E P++ +V GY TM AI A +KK+ Sbjct: 270 ETPKGWIVTGYPWDQIDSQEHASFAANYYRRFNEYPKVGSVVGYATMQAIFAAIKKANST 329 Query: 345 DGEVLVEAMRGLQFGSPLGPVSFRALDQQASLGAFVGLVSQKDGRSSMRDWRYLDGAAYL 404 D E LV A+RGL+F +P GP FRALD Q+++GA+VG + + + +M WRY DG AYL Sbjct: 330 DNEKLVTALRGLKFSTPFGPAEFRALDHQSTMGAYVGKLDLRGHKGTMVQWRYADGKAYL 389 Query: 405 PPPAYVRSRRPASASK 420 P AYV++RRP A K Sbjct: 390 PSDAYVKARRPPDAMK 405 >ref|YP_003447741.1| branched-chain amino acid transport system substrate-binding protein [Azospirillum sp. B510] dbj|BAI71197.1| branched-chain amino acid transport system substrate-binding protein [Azospirillum sp. B510] Length = 418 Score = 402 bits (1033), Expect = e-110, Method: Compositional matrix adjust. Identities = 194/373 (52%), Positives = 256/373 (68%), Gaps = 1/373 (0%) Query: 45 IRIGEINSRHRLSTAGQAYRNGLALALEQINAAGGV-GGRPLQLVVREDDGDADQAARNA 103 +R+GEINS L YR G LALE+INAAGGV G LQ+V +D G D A R A Sbjct: 45 VRVGEINSYTGLPAFTIPYRQGWQLALEEINAAGGVIGCCELQVVSHDDAGKPDDAVRVA 104 Query: 104 RALISQDHVEVLTGSMLSDVALAVSREAARGRTVLVVGDALSDAITLDKGNRYTFRVRPS 163 + ++S + ++VL G+ S + LAV+ AAR + V + L+DAIT KGNRYTFR+RPS Sbjct: 105 QEMVSNEAIDVLAGTYFSHIGLAVADFAARNKIPFVAAEPLTDAITWSKGNRYTFRLRPS 164 Query: 164 TYMQAAMLAEQAARLPGRRWAVVAPNYEYGQSAVASFKLLLKQARPDVEFVSDQWPALGK 223 TYMQAAML E+AA+LP +RWA VAPNYEYGQSAVA FK +L + RPDVEFV++QWPA GK Sbjct: 165 TYMQAAMLVEEAAKLPAKRWATVAPNYEYGQSAVAWFKQMLSEKRPDVEFVAEQWPAQGK 224 Query: 224 IKADDVARAIRQSRPDGIFNATFGEDLQKFVQAGNRQQLFEGVRVVSMASAGAPSLDPSQ 283 ++A +A+ ++PD IFN TFG DL KFV+ G + LF +VVS+ + L+P + Sbjct: 225 LEAGPTVQALAAAKPDAIFNVTFGADLAKFVREGEGRGLFRNRKVVSLLTGEPEYLEPMK 284 Query: 284 SEAIRDWLAIGYPWDQVSLPEHQRFLEAYLKRFSERPQLSAVFGYTTMMAIAAGLKKSEG 343 EA W+ GYPWDQ+ P H+ F+ AY RF E P+ ++ GY TM A+AAG+ K++ Sbjct: 285 EEAPEGWIVTGYPWDQIDTPAHKAFVAAYTARFKESPKAGSLVGYITMKAVAAGITKAKS 344 Query: 344 GDGEVLVEAMRGLQFGSPLGPVSFRALDQQASLGAFVGLVSQKDGRSSMRDWRYLDGAAY 403 + E +V+A+ GL SP+GPV+FRA D QA++GA+VG+ + KDGR +M+DWRY DGA Y Sbjct: 345 ANAEPIVDALAGLTIDSPVGPVTFRASDHQATMGAYVGVTTVKDGRGTMKDWRYADGANY 404 Query: 404 LPPPAYVRSRRPA 416 LPP R RPA Sbjct: 405 LPPDEAARKMRPA 417 >ref|YP_420841.1| ABC-type branched-chain amino acid transport systems [Magnetospirillum magneticum AMB-1] dbj|BAE50282.1| ABC-type branched-chain amino acid transport systems [Magnetospirillum magneticum AMB-1] Length = 411 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 186/413 (45%), Positives = 265/413 (64%), Gaps = 4/413 (0%) Query: 6 AAHRKQSLHSPRSRWTLLLGLAVALALA-LPWGPSHAAEAIRIGEINSRHRLSTAGQAYR 64 + H K+ R T+L A+A +A G + AA+ I+IGEINS L YR Sbjct: 2 STHVKEGFMDRR---TVLKSFALAALMAGSQMGTASAADTIKIGEINSYTSLPAFTLPYR 58 Query: 65 NGLALALEQINAAGGVGGRPLQLVVREDDGDADQAARNARALISQDHVEVLTGSMLSDVA 124 +G LAL++INAAGG+ G+ L+++ R+D G A A L+S+++V VL G+ S + Sbjct: 59 SGWQLALDEINAAGGINGKKLEVISRDDGGKPGDAVTAANELVSRENVSVLFGTFFSHIG 118 Query: 125 LAVSREAARGRTVLVVGDALSDAITLDKGNRYTFRVRPSTYMQAAMLAEQAARLPGRRWA 184 LAVS A + + V V + L+DA+T++KGNRYTFR+RP TYMQAAML +QAA+LP + WA Sbjct: 119 LAVSDFANQRKIVFVAAEPLTDALTMEKGNRYTFRLRPGTYMQAAMLVDQAAKLPAKTWA 178 Query: 185 VVAPNYEYGQSAVASFKLLLKQARPDVEFVSDQWPALGKIKADDVARAIRQSRPDGIFNA 244 VAPNYEYGQ AV FK L+ RPD+++V +QWPA+GKI +A+ ++ P+ IFN Sbjct: 179 TVAPNYEYGQVAVKVFKELMSAKRPDIKWVDEQWPAMGKIDGGATVQALARAEPEAIFNV 238 Query: 245 TFGEDLQKFVQAGNRQQLFEGVRVVSMASAGAPSLDPSQSEAIRDWLAIGYPWDQVSLPE 304 TFG DL KF++ GN + LF+ VVS+ + LDP E W+ GYPW+Q+ PE Sbjct: 239 TFGADLTKFIREGNTRGLFKNRSVVSLLTGEPEYLDPLGDETPSGWIVSGYPWEQIKTPE 298 Query: 305 HQRFLEAYLKRFSERPQLSAVFGYTTMMAIAAGLKKSEGGDGEVLVEAMRGLQFGSPLGP 364 H+ FL+AY +F++ P+L +V GY TM A+A ++K+ D + L+ A GL+ SPLGP Sbjct: 299 HEAFLKAYKAKFNDYPRLGSVVGYNTMKAVAEMIRKAGSVDTDKLIAAGEGLKIDSPLGP 358 Query: 365 VSFRALDQQASLGAFVGLVSQKDGRSSMRDWRYLDGAAYLPPPAYVRSRRPAS 417 ++FRA D Q+++G ++G + KDG+ M DW Y +GA YLP A V RP + Sbjct: 359 ITFRAEDHQSTMGGYIGKTAMKDGKGMMVDWHYANGADYLPALAEVAKARPKN 411 >ref|YP_004415296.1| branched-chain amino acid-binding protein [Pusillimonas sp. T7-7] gb|AEC18672.1| branched-chain amino acid-binding protein [Pusillimonas sp. T7-7] Length = 446 Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust. Identities = 179/396 (45%), Positives = 261/396 (65%) Query: 24 LGLAVALALALPWGPSHAAEAIRIGEINSRHRLSTAGQAYRNGLALALEQINAAGGVGGR 83 L L A A A +HA + I+IGE+NS Y+ G+ LA+EQINAAGGV G+ Sbjct: 51 LKLVGAFAFAASCTLTHAQDVIKIGELNSYKTQPAFLGPYKMGMELAIEQINAAGGVNGK 110 Query: 84 PLQLVVREDDGDADQAARNARALISQDHVEVLTGSMLSDVALAVSREAARGRTVLVVGDA 143 L+L+VR+D+ + A R A L+++D V+VLTG+ LS V LAV+ A + + + Sbjct: 111 KLELIVRDDNSNPGDAVRAAEELLTRDKVDVLTGTFLSHVGLAVTDFAKHKQRFFLASEP 170 Query: 144 LSDAITLDKGNRYTFRVRPSTYMQAAMLAEQAARLPGRRWAVVAPNYEYGQSAVASFKLL 203 L+D I + GNRYT+R+R STYMQ AML A ++ +RWA+V PNYEYGQSAV +FK L Sbjct: 171 LTDKIVWEDGNRYTYRLRASTYMQVAMLIPAAVKMNKKRWAIVYPNYEYGQSAVTTFKTL 230 Query: 204 LKQARPDVEFVSDQWPALGKIKADDVARAIRQSRPDGIFNATFGEDLQKFVQAGNRQQLF 263 LKQA+PDVEFV++Q LGKI A +V +A+ ++PD +FN F DL KFV+AG ++ F Sbjct: 231 LKQAQPDVEFVAEQAAPLGKIDAGNVVQALADAKPDAMFNVLFATDLAKFVRAGTQRNFF 290 Query: 264 EGVRVVSMASAGAPSLDPSQSEAIRDWLAIGYPWDQVSLPEHQRFLEAYLKRFSERPQLS 323 E + VVS+ + LDP +E W+ GYPW + PEH RFLEAY +R+++ P+L Sbjct: 291 EDLSVVSLLTGEPEYLDPLGAETPVGWVVTGYPWYAIDTPEHNRFLEAYQQRYNDYPRLG 350 Query: 324 AVFGYTTMMAIAAGLKKSEGGDGEVLVEAMRGLQFGSPLGPVSFRALDQQASLGAFVGLV 383 + GY ++++AAG+KK+ + E ++EA +GL+ +P+G +++R +D Q+++GA+VG + Sbjct: 351 TIIGYNAILSLAAGIKKAGTTETEAMIEAFKGLEVDTPVGRITYRGIDHQSTMGAYVGTL 410 Query: 384 SQKDGRSSMRDWRYLDGAAYLPPPAYVRSRRPASAS 419 + KDG+ M D Y+DGA+ LP VR RPAS + Sbjct: 411 AIKDGKGIMTDIEYIDGASVLPSDEQVRQWRPASTN 446 >ref|ZP_08626969.1| ABC transporter substrate-binding protein [Bradyrhizobiaceae bacterium SG-6C] gb|EGP10249.1| ABC transporter substrate-binding protein [Bradyrhizobiaceae bacterium SG-6C] Length = 408 Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust. Identities = 181/405 (44%), Positives = 259/405 (63%), Gaps = 2/405 (0%) Query: 18 SRWTLLLGLAVALALALPWGPSHAAEA--IRIGEINSRHRLSTAGQAYRNGLALALEQIN 75 S+W L LA+ L GPS AA+ + IGEINS L YRNG LA+E+ N Sbjct: 4 SKWRLQKTLALGAILVAISGPSRAADEKPVLIGEINSYAPLPQFTGPYRNGWQLAVEEAN 63 Query: 76 AAGGVGGRPLQLVVREDDGDADQAARNARALISQDHVEVLTGSMLSDVALAVSREAARGR 135 A+ G R +Q+ R+D+G D+A A +++ ++VLTG LS + LA+S A R + Sbjct: 64 ASRGPNDRLIQVTSRDDNGKPDEAILIANEMLNNQKIDVLTGGFLSHIGLAMSDFALRNK 123 Query: 136 TVLVVGDALSDAITLDKGNRYTFRVRPSTYMQAAMLAEQAARLPGRRWAVVAPNYEYGQS 195 V V ++DA+ +KGNRYTFRV PST MQ ML +QAA++P +RWA +A NYE+GQ Sbjct: 124 LVFVAAQPMTDALVWEKGNRYTFRVTPSTNMQIMMLVDQAAKMPAKRWATIANNYEFGQV 183 Query: 196 AVASFKLLLKQARPDVEFVSDQWPALGKIKADDVARAIRQSRPDGIFNATFGEDLQKFVQ 255 AVASFK LK RPDVEFV +QWPALGK++A +A+ +PD IF+ FG +L +FV+ Sbjct: 184 AVASFKAQLKAQRPDVEFVGEQWPALGKLEAGSTVQALSAIKPDAIFSMLFGAELNRFVR 243 Query: 256 AGNRQQLFEGVRVVSMASAGAPSLDPSQSEAIRDWLAIGYPWDQVSLPEHQRFLEAYLKR 315 GN++ LF+G V+++ + LD ++E + W+ GYPW+Q+ PEH F++ Y K+ Sbjct: 244 EGNQRDLFKGREVINLQTGCPEFLDALKAETPKGWIVTGYPWEQIKTPEHVAFVDVYRKK 303 Query: 316 FSERPQLSAVFGYTTMMAIAAGLKKSEGGDGEVLVEAMRGLQFGSPLGPVSFRALDQQAS 375 +++ P+ ++ GYTTM AI AG++K+ D E L+ A+RG+ SP GPVSFR DQQ + Sbjct: 304 YNDYPRCGSIIGYTTMKAIIAGIRKAGSTDPEQLIPALRGISIISPFGPVSFRPQDQQLT 363 Query: 376 LGAFVGLVSQKDGRSSMRDWRYLDGAAYLPPPAYVRSRRPASASK 420 LG +VG + K+G M DW Y DG + PP +V+S+RP A++ Sbjct: 364 LGTYVGRLDMKNGAGLMVDWVYSDGKNFQPPDDFVKSKRPVEATR 408 >ref|YP_003692240.1| extracellular ligand-binding receptor [Starkeya novella DSM 506] gb|ADH87621.1| Extracellular ligand-binding receptor [Starkeya novella DSM 506] Length = 409 Score = 369 bits (946), Expect = e-100, Method: Compositional matrix adjust. Identities = 194/398 (48%), Positives = 259/398 (65%), Gaps = 3/398 (0%) Query: 23 LLGLAVALA-LALPWG--PSHAAEAIRIGEINSRHRLSTAGQAYRNGLALALEQINAAGG 79 L G A+++A LALP P+ AAE IRIGE+NS YR G+ LA+++IN AGG Sbjct: 11 LTGAAMSVAALALPAFTLPAFAAEPIRIGELNSYKAQPAFLDPYRKGMQLAVKEINDAGG 70 Query: 80 VGGRPLQLVVREDDGDADQAARNARALISQDHVEVLTGSMLSDVALAVSREAARGRTVLV 139 V GRPL+L+ R+D G+ A R A L++++ V++L G+ LS + LAVS A + + + Sbjct: 71 VNGRPLELISRDDGGNPGDAIRVAEDLVTREKVDLLAGTFLSHIGLAVSGFAGKRKVFFL 130 Query: 140 VGDALSDAITLDKGNRYTFRVRPSTYMQAAMLAEQAARLPGRRWAVVAPNYEYGQSAVAS 199 + L+D +T GNRYTFR+RPSTYMQ AML A +RWA+V PNYEYGQSA A+ Sbjct: 131 AAEPLTDKLTWTDGNRYTFRLRPSTYMQVAMLLPAAKAAQRKRWAIVYPNYEYGQSAAAT 190 Query: 200 FKLLLKQARPDVEFVSDQWPALGKIKADDVARAIRQSRPDGIFNATFGEDLQKFVQAGNR 259 FK LLK A+PDVEFV +Q LGKI A VA+AI ++PD +FN FG DL KFV+ N Sbjct: 191 FKKLLKDAQPDVEFVEEQATPLGKIDAGPVAQAIADAKPDAVFNVLFGPDLAKFVREANT 250 Query: 260 QQLFEGVRVVSMASAGAPSLDPSQSEAIRDWLAIGYPWDQVSLPEHQRFLEAYLKRFSER 319 + EG VVS+ S LDP + E W+ GYPW ++ PEH FL AY K + + Sbjct: 251 RGALEGTHVVSLLSGEPEYLDPLKDETPVGWVVTGYPWYAITTPEHMAFLSAYQKAYGDY 310 Query: 320 PQLSAVFGYTTMMAIAAGLKKSEGGDGEVLVEAMRGLQFGSPLGPVSFRALDQQASLGAF 379 P+L +V GYTT+ +IAAGL K+ D E LV+A RGLQ P GP S+RA D QA++GA+ Sbjct: 311 PRLGSVVGYTTIKSIAAGLNKAGSTDSEKLVDAFRGLQVTGPFGPFSYRASDHQATMGAY 370 Query: 380 VGLVSQKDGRSSMRDWRYLDGAAYLPPPAYVRSRRPAS 417 VG+++ KDG+ M Y+DGA+ LP A V++ RPA+ Sbjct: 371 VGILALKDGQGIMVQPSYVDGASVLPSDAEVKALRPAT 408 >ref|YP_425654.1| twin-arginine translocation pathway signal [Rhodospirillum rubrum ATCC 11170] gb|ABC21367.1| Twin-arginine translocation pathway signal [Rhodospirillum rubrum ATCC 11170] gb|AEO47047.1| twin-arginine translocation pathway signal [Rhodospirillum rubrum F11] Length = 421 Score = 368 bits (945), Expect = e-100, Method: Compositional matrix adjust. Identities = 188/379 (49%), Positives = 261/379 (68%), Gaps = 1/379 (0%) Query: 39 SHAAEAIRIGEINSRHRLSTAGQAYRNGLALALEQINAAGGV-GGRPLQLVVREDDGDAD 97 + AAEAIRIGEINS ++ YRNG LA+EQINAAGG+ GGRPL+++ R+D GD Sbjct: 42 AQAAEAIRIGEINSYSQIPAFTLPYRNGWQLAVEQINAAGGLLGGRPLEVISRDDGGDPG 101 Query: 98 QAARNARALISQDHVEVLTGSMLSDVALAVSREAARGRTVLVVGDALSDAITLDKGNRYT 157 +A A+ L+++ V L G+ LS V LAVS A + + + + + L+DA+T +KGNRYT Sbjct: 102 KAVTAAQELLTRHGVHALAGTFLSHVGLAVSDFARQRKVLFMASEPLTDALTWEKGNRYT 161 Query: 158 FRVRPSTYMQAAMLAEQAARLPGRRWAVVAPNYEYGQSAVASFKLLLKQARPDVEFVSDQ 217 +R+RPSTYMQAAMLA +AA+LP RWA +APNYEYGQSAVA FK LL ARP+V FV++Q Sbjct: 162 YRLRPSTYMQAAMLAAEAAKLPITRWATIAPNYEYGQSAVARFKELLLAARPEVTFVAEQ 221 Query: 218 WPALGKIKADDVARAIRQSRPDGIFNATFGEDLQKFVQAGNRQQLFEGVRVVSMASAGAP 277 WPAL K+ A +A++Q+ P+G+FN FG DL KFV+ G + LF G +VVSM + Sbjct: 222 WPALYKLDAGPTVQALQQAEPEGLFNVLFGADLPKFVREGRVRGLFAGRQVVSMLTGEPE 281 Query: 278 SLDPSQSEAIRDWLAIGYPWDQVSLPEHQRFLEAYLKRFSERPQLSAVFGYTTMMAIAAG 337 L+P + EA W+ GYPW + H+ F+EAY R+ E P + ++ GY T+ A+A Sbjct: 282 YLNPLKDEAPEGWIVTGYPWYDIDTAPHRAFVEAYRARWKEDPFVGSLVGYNTLTAMAVA 341 Query: 338 LKKSEGGDGEVLVEAMRGLQFGSPLGPVSFRALDQQASLGAFVGLVSQKDGRSSMRDWRY 397 +K+ G + E LVE ++ + F +P+GP+SFRA D Q+++GA+VG + +DG+ M DWRY Sbjct: 342 FEKAGGTESETLVETLKDMAFSTPMGPLSFRASDHQSTMGAWVGRTALRDGKGVMVDWRY 401 Query: 398 LDGAAYLPPPAYVRSRRPA 416 +DG + LPPP V + RPA Sbjct: 402 VDGGSVLPPPEVVSAWRPA 420 >pdb|3I45|A Chain A, Crystal Structure Of Putative Twin-Arginine Translocation Pathway Signal Protein From Rhodospirillum Rubrum Atcc 11170 Length = 387 Score = 365 bits (936), Expect = 9e-99, Method: Compositional matrix adjust. Identities = 186/375 (49%), Positives = 258/375 (68%), Gaps = 1/375 (0%) Query: 43 EAIRIGEINSRHRLSTAGQAYRNGLALALEQINAAGGV-GGRPLQLVVREDDGDADQAAR 101 EAIRIGEINS ++ YRNG LA+EQINAAGG+ GGRPL+++ R+D GD +A Sbjct: 4 EAIRIGEINSYSQIPAFTLPYRNGWQLAVEQINAAGGLLGGRPLEVISRDDGGDPGKAVT 63 Query: 102 NARALISQDHVEVLTGSMLSDVALAVSREAARGRTVLVVGDALSDAITLDKGNRYTFRVR 161 A+ L+++ V L G+ LS V LAVS A + + + + + L+DA+T +KGNRYT+R+R Sbjct: 64 AAQELLTRHGVHALAGTFLSHVGLAVSDFARQRKVLFMASEPLTDALTWEKGNRYTYRLR 123 Query: 162 PSTYMQAAMLAEQAARLPGRRWAVVAPNYEYGQSAVASFKLLLKQARPDVEFVSDQWPAL 221 PSTYMQAAMLA +AA+LP RWA +APNYEYGQSAVA FK LL ARP+V FV++QWPAL Sbjct: 124 PSTYMQAAMLAAEAAKLPITRWATIAPNYEYGQSAVARFKELLLAARPEVTFVAEQWPAL 183 Query: 222 GKIKADDVARAIRQSRPDGIFNATFGEDLQKFVQAGNRQQLFEGVRVVSMASAGAPSLDP 281 K+ A +A++Q+ P+G+FN FG DL KFV+ G + LF G +VVSM + L+P Sbjct: 184 YKLDAGPTVQALQQAEPEGLFNVLFGADLPKFVREGRVRGLFAGRQVVSMLTGEPEYLNP 243 Query: 282 SQSEAIRDWLAIGYPWDQVSLPEHQRFLEAYLKRFSERPQLSAVFGYTTMMAIAAGLKKS 341 + EA W+ GYPW + H+ F+EAY R+ E P + ++ GY T+ A+A +K+ Sbjct: 244 LKDEAPEGWIVTGYPWYDIDTAPHRAFVEAYRARWKEDPFVGSLVGYNTLTAMAVAFEKA 303 Query: 342 EGGDGEVLVEAMRGLQFGSPLGPVSFRALDQQASLGAFVGLVSQKDGRSSMRDWRYLDGA 401 G + E LVE ++ + F +P+GP+SFRA D Q+++GA+VG + +DG+ M DWRY+DG Sbjct: 304 GGTESETLVETLKDMAFSTPMGPLSFRASDHQSTMGAWVGRTALRDGKGVMVDWRYVDGG 363 Query: 402 AYLPPPAYVRSRRPA 416 + LPPP V + RPA Sbjct: 364 SVLPPPEVVSAWRPA 378