BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0147.p (216 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775041.1| endonuclease III protein [Herbaspirillum ser... 445 e-123 ref|YP_001099119.1| DNA glycosylase/apyrimidinic (AP) lyase [Her... 383 e-104 ref|YP_001352406.1| DNA-(apurinic or apyrimidinic site) lyase [J... 380 e-104 ref|YP_004753169.1| endonuclease III [Collimonas fungivorans Ter... 365 3e-99 ref|ZP_08275219.1| Endonuclease III [Oxalobacteraceae bacterium ... 357 9e-97 gb|ACN58949.1| endonuclease III [uncultured bacterium BLR10] 339 2e-91 ref|YP_557724.1| DNA-(apurinic or apyrimidinic site) lyase / end... 338 4e-91 ref|ZP_06841980.1| endonuclease III [Burkholderia sp. Ch1-1] >gi... 337 7e-91 emb|CBJ38165.1| endonuclease III; DNA glycosylase/apyrimidinic (... 337 1e-90 ref|YP_003812458.1| Endonuclease III [gamma proteobacterium HdN1... 336 1e-90 >ref|YP_003775041.1| endonuclease III protein [Herbaspirillum seropedicae SmR1] gb|ADJ63133.1| endonuclease III protein [Herbaspirillum seropedicae SmR1] Length = 216 Score = 445 bits (1145), Expect = e-123, Method: Compositional matrix adjust. Identities = 214/216 (99%), Positives = 215/216 (99%) Query: 1 MNPTKRREIFERLRQANPTPTTELEYTTPFELLIAVLLSAQATDVSVNKATRKLYPVANT 60 MNPTKRREIFERLRQANPTPTTELEYTTPFELLIAVLLSAQATDVSVNKATRKLYPVANT Sbjct: 1 MNPTKRREIFERLRQANPTPTTELEYTTPFELLIAVLLSAQATDVSVNKATRKLYPVANT 60 Query: 61 PEAIYRMGVDQLMPYIQTIGLYRTKAKNVIETCRILIEEQGGQVPESREALEALPGVGRK 120 PEAIYRMGVDQLMPYIQTIGLYRTKAKNVIETCRILIEE GGQVPESREALEALPGVGRK Sbjct: 61 PEAIYRMGVDQLMPYIQTIGLYRTKAKNVIETCRILIEEHGGQVPESREALEALPGVGRK 120 Query: 121 TANVVLNTAFGHPTIAVDTHIFRVSNRTGLAPGKDVDEVERKLIKFVAPEFRQDAHHWLI 180 TANVVLNTAFGHPTIAVDTHIFRVSNRTGLAPGKDVDEVERKLIKFVAPEFRQDAHHWLI Sbjct: 121 TANVVLNTAFGHPTIAVDTHIFRVSNRTGLAPGKDVDEVERKLIKFVAPEFRQDAHHWLI 180 Query: 181 LHGRYTCIARKPQCWNCIIADLCEFKQKTPLPTKGV 216 LHGRYTCIARKPQCWNCIIADLCEFKQKTPLP+KGV Sbjct: 181 LHGRYTCIARKPQCWNCIIADLCEFKQKTPLPSKGV 216 >ref|YP_001099119.1| DNA glycosylase/apyrimidinic (AP) lyase [Herminiimonas arsenicoxydans] emb|CAL60992.1| Endonuclease III (DNA-(apurinic or apyrimidinic site) lyase) [Herminiimonas arsenicoxydans] Length = 216 Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust. Identities = 182/216 (84%), Positives = 195/216 (90%) Query: 1 MNPTKRREIFERLRQANPTPTTELEYTTPFELLIAVLLSAQATDVSVNKATRKLYPVANT 60 MN KRREIF RLR ANP PTTELEY TPF+LLIAVLLSAQATDVSVNKATRKLYP A T Sbjct: 1 MNAEKRREIFNRLRAANPHPTTELEYQTPFQLLIAVLLSAQATDVSVNKATRKLYPHAGT 60 Query: 61 PEAIYRMGVDQLMPYIQTIGLYRTKAKNVIETCRILIEEQGGQVPESREALEALPGVGRK 120 P IY +GV+ LMPYIQTIGLYRTKAKNVIETCRILI E GG+VP +R ALEALPGVGRK Sbjct: 61 PRKIYALGVEGLMPYIQTIGLYRTKAKNVIETCRILIAEHGGEVPRTRAALEALPGVGRK 120 Query: 121 TANVVLNTAFGHPTIAVDTHIFRVSNRTGLAPGKDVDEVERKLIKFVAPEFRQDAHHWLI 180 TANVV+NTAFG PTIAVDTHIFRV+NRTG+APGK+VD VE+KL+KFVAPEFR DAHHWLI Sbjct: 121 TANVVMNTAFGEPTIAVDTHIFRVANRTGIAPGKNVDIVEQKLMKFVAPEFRHDAHHWLI 180 Query: 181 LHGRYTCIARKPQCWNCIIADLCEFKQKTPLPTKGV 216 LHGRYTCIAR P+CWNCIIADLCE+KQKTPLP KGV Sbjct: 181 LHGRYTCIARTPKCWNCIIADLCEYKQKTPLPAKGV 216 >ref|YP_001352406.1| DNA-(apurinic or apyrimidinic site) lyase [Janthinobacterium sp. Marseille] gb|ABR88317.1| DNA-(apurinic or apyrimidinic site) lyase [Janthinobacterium sp. Marseille] Length = 216 Score = 380 bits (977), Expect = e-104, Method: Compositional matrix adjust. Identities = 181/216 (83%), Positives = 195/216 (90%) Query: 1 MNPTKRREIFERLRQANPTPTTELEYTTPFELLIAVLLSAQATDVSVNKATRKLYPVANT 60 MN KRREIF RLR ANP PTTELEY TPF+LLIAVLLSAQATDVSVNKATRKLYP A T Sbjct: 1 MNAEKRREIFNRLRAANPHPTTELEYQTPFQLLIAVLLSAQATDVSVNKATRKLYPHAGT 60 Query: 61 PEAIYRMGVDQLMPYIQTIGLYRTKAKNVIETCRILIEEQGGQVPESREALEALPGVGRK 120 P+ IY +GVD L+PYIQTIGLYRTKAKNVIETCRILI E GG+VP +RE LEALPGVGRK Sbjct: 61 PKKIYALGVDGLIPYIQTIGLYRTKAKNVIETCRILIAEHGGEVPRTREELEALPGVGRK 120 Query: 121 TANVVLNTAFGHPTIAVDTHIFRVSNRTGLAPGKDVDEVERKLIKFVAPEFRQDAHHWLI 180 TANVV+NTAFG TIAVDTHIFRVSNRTGLAPGK+VD VE+KL+KFVAPEF+QDAHHWLI Sbjct: 121 TANVVMNTAFGEATIAVDTHIFRVSNRTGLAPGKNVDIVEQKLMKFVAPEFQQDAHHWLI 180 Query: 181 LHGRYTCIARKPQCWNCIIADLCEFKQKTPLPTKGV 216 LHGRYTCIAR P+CWNC+IADLCE+K KTPLP KGV Sbjct: 181 LHGRYTCIARTPKCWNCVIADLCEYKSKTPLPAKGV 216 >ref|YP_004753169.1| endonuclease III [Collimonas fungivorans Ter331] gb|AEK62346.1| Endonuclease III [Collimonas fungivorans Ter331] Length = 216 Score = 365 bits (936), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 175/216 (81%), Positives = 188/216 (87%) Query: 1 MNPTKRREIFERLRQANPTPTTELEYTTPFELLIAVLLSAQATDVSVNKATRKLYPVANT 60 MN KRREIF RLR A P PTTELEYTTPFELLI+V+LSAQATDVSVNKATRKLYPVANT Sbjct: 1 MNANKRREIFTRLRAALPHPTTELEYTTPFELLISVILSAQATDVSVNKATRKLYPVANT 60 Query: 61 PEAIYRMGVDQLMPYIQTIGLYRTKAKNVIETCRILIEEQGGQVPESREALEALPGVGRK 120 P IY +G+D L+PYIQTIGLYRTKAKNVIETCR+L+ GQVP +RE LEALPGVGRK Sbjct: 61 PAQIYALGIDGLIPYIQTIGLYRTKAKNVIETCRMLVALHDGQVPRTREQLEALPGVGRK 120 Query: 121 TANVVLNTAFGHPTIAVDTHIFRVSNRTGLAPGKDVDEVERKLIKFVAPEFRQDAHHWLI 180 TANVVLNTAFG PTIAVDTHIFRVSNRTG+APGKDV+ VE KL+K V EF DAHHWLI Sbjct: 121 TANVVLNTAFGVPTIAVDTHIFRVSNRTGIAPGKDVEAVEHKLMKLVPAEFLLDAHHWLI 180 Query: 181 LHGRYTCIARKPQCWNCIIADLCEFKQKTPLPTKGV 216 LHGRYTCIARKP CWNC IADLC+FK KTPLP KG+ Sbjct: 181 LHGRYTCIARKPLCWNCSIADLCDFKAKTPLPEKGI 216 >ref|ZP_08275219.1| Endonuclease III [Oxalobacteraceae bacterium IMCC9480] gb|EGF31314.1| Endonuclease III [Oxalobacteraceae bacterium IMCC9480] Length = 216 Score = 357 bits (915), Expect = 9e-97, Method: Compositional matrix adjust. Identities = 165/216 (76%), Positives = 186/216 (86%) Query: 1 MNPTKRREIFERLRQANPTPTTELEYTTPFELLIAVLLSAQATDVSVNKATRKLYPVANT 60 MN KRR IFER + ANP P TEL Y+TPFELLIAVLLSAQATDV+VNKATRKL+P+A+T Sbjct: 1 MNAEKRRLIFERWQAANPNPATELAYSTPFELLIAVLLSAQATDVAVNKATRKLFPMAST 60 Query: 61 PEAIYRMGVDQLMPYIQTIGLYRTKAKNVIETCRILIEEQGGQVPESREALEALPGVGRK 120 P AIY +GVD L+PYIQTIGL+R KAKN IETCR+++ E GGQ+P R LEALPGVGRK Sbjct: 61 PAAIYALGVDGLIPYIQTIGLFRNKAKNTIETCRLILTEHGGQIPRDRAGLEALPGVGRK 120 Query: 121 TANVVLNTAFGHPTIAVDTHIFRVSNRTGLAPGKDVDEVERKLIKFVAPEFRQDAHHWLI 180 TANVVLNTAFG PTIAVDTHIFRV NRTGLAPGKDVD VE KL+KFV EF QDAHHW+I Sbjct: 121 TANVVLNTAFGEPTIAVDTHIFRVGNRTGLAPGKDVDVVEHKLMKFVPREFLQDAHHWMI 180 Query: 181 LHGRYTCIARKPQCWNCIIADLCEFKQKTPLPTKGV 216 LHGRYTC+AR PQCWNC+IADLC+++ KTP+P K V Sbjct: 181 LHGRYTCMARSPQCWNCMIADLCDYRDKTPVPAKAV 216 >gb|ACN58949.1| endonuclease III [uncultured bacterium BLR10] Length = 215 Score = 339 bits (869), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 159/212 (75%), Positives = 182/212 (85%) Query: 1 MNPTKRREIFERLRQANPTPTTELEYTTPFELLIAVLLSAQATDVSVNKATRKLYPVANT 60 MNP KR E+F R R ANP P TELEYTTPFELLIAVLLSAQATDV VNKATRKLYPVANT Sbjct: 1 MNPAKRYEMFVRFRAANPKPETELEYTTPFELLIAVLLSAQATDVGVNKATRKLYPVANT 60 Query: 61 PEAIYRMGVDQLMPYIQTIGLYRTKAKNVIETCRILIEEQGGQVPESREALEALPGVGRK 120 P+AI +G ++L YIQTIGLY+TKA+NV+ TCR+L+E GG+VP R +LEALPGVGRK Sbjct: 61 PQAILDLGEEELKTYIQTIGLYKTKARNVMSTCRMLVELHGGEVPRDRISLEALPGVGRK 120 Query: 121 TANVVLNTAFGHPTIAVDTHIFRVSNRTGLAPGKDVDEVERKLIKFVAPEFRQDAHHWLI 180 TANVV+NTAFG PT+AVDTHIFRVSNRTGLAPGK+V+ VE+KL+KFV EF DAHHWLI Sbjct: 121 TANVVMNTAFGEPTMAVDTHIFRVSNRTGLAPGKNVEIVEQKLLKFVPKEFLHDAHHWLI 180 Query: 181 LHGRYTCIARKPQCWNCIIADLCEFKQKTPLP 212 LHGRYTC ARKP+CWNC+ DLC+++ KTP P Sbjct: 181 LHGRYTCKARKPECWNCMQIDLCDYRAKTPAP 212 >ref|YP_557724.1| DNA-(apurinic or apyrimidinic site) lyase / endonuclease III [Burkholderia xenovorans LB400] gb|ABE29672.1| DNA-(apurinic or apyrimidinic site) lyase / endonuclease III [Burkholderia xenovorans LB400] Length = 214 Score = 338 bits (866), Expect = 4e-91, Method: Compositional matrix adjust. Identities = 158/212 (74%), Positives = 181/212 (85%) Query: 1 MNPTKRREIFERLRQANPTPTTELEYTTPFELLIAVLLSAQATDVSVNKATRKLYPVANT 60 MN KRR I+E LR NP PTTELEYTTPFELLIAVLLSAQATDVSVNKA RK++PVANT Sbjct: 1 MNANKRRAIYETLRSLNPHPTTELEYTTPFELLIAVLLSAQATDVSVNKAMRKMFPVANT 60 Query: 61 PEAIYRMGVDQLMPYIQTIGLYRTKAKNVIETCRILIEEQGGQVPESREALEALPGVGRK 120 P+ ++ +G + + YI+TIGLYRTKAKNVI TCRIL+++ GG+VPE REALE+LPGVGRK Sbjct: 61 PQQVFDLGEEGVAGYIKTIGLYRTKAKNVIATCRILLDQYGGEVPEDREALESLPGVGRK 120 Query: 121 TANVVLNTAFGHPTIAVDTHIFRVSNRTGLAPGKDVDEVERKLIKFVAPEFRQDAHHWLI 180 TANV+LNTAFGHPTIAVDTHIFRV+NRTGLAPGKDV VE L KF EF+QDAHHWLI Sbjct: 121 TANVILNTAFGHPTIAVDTHIFRVANRTGLAPGKDVRAVEAALEKFTPAEFKQDAHHWLI 180 Query: 181 LHGRYTCIARKPQCWNCIIADLCEFKQKTPLP 212 LHGRY C AR+P+CW+C+I LCEF+ KTP P Sbjct: 181 LHGRYVCKARRPECWHCVIEPLCEFRPKTPAP 212 >ref|ZP_06841980.1| endonuclease III [Burkholderia sp. Ch1-1] gb|EFG70505.1| endonuclease III [Burkholderia sp. Ch1-1] Length = 214 Score = 337 bits (864), Expect = 7e-91, Method: Compositional matrix adjust. Identities = 157/212 (74%), Positives = 181/212 (85%) Query: 1 MNPTKRREIFERLRQANPTPTTELEYTTPFELLIAVLLSAQATDVSVNKATRKLYPVANT 60 MN KRR I+E L+ NP PTTELEYTTPFELLIAVLLSAQATDVSVNKA RK++PVANT Sbjct: 1 MNANKRRAIYETLKSLNPHPTTELEYTTPFELLIAVLLSAQATDVSVNKAMRKMFPVANT 60 Query: 61 PEAIYRMGVDQLMPYIQTIGLYRTKAKNVIETCRILIEEQGGQVPESREALEALPGVGRK 120 P+ ++ +G + + YI+TIGLYRTKAKNVI TCRIL+++ GG+VPE REALE+LPGVGRK Sbjct: 61 PQKVFDLGEEGVAGYIKTIGLYRTKAKNVIATCRILLDQYGGEVPEDREALESLPGVGRK 120 Query: 121 TANVVLNTAFGHPTIAVDTHIFRVSNRTGLAPGKDVDEVERKLIKFVAPEFRQDAHHWLI 180 TANV+LNTAFGHPTIAVDTHIFRV+NRTGLAPGKDV VE L KF EF+QDAHHWLI Sbjct: 121 TANVILNTAFGHPTIAVDTHIFRVANRTGLAPGKDVRAVEAALEKFTPAEFKQDAHHWLI 180 Query: 181 LHGRYTCIARKPQCWNCIIADLCEFKQKTPLP 212 LHGRY C AR+P+CW+C+I LCEF+ KTP P Sbjct: 181 LHGRYVCKARRPECWHCVIEPLCEFRPKTPAP 212 >emb|CBJ38165.1| endonuclease III; DNA glycosylase/apyrimidinic (AP) lyase, acts on 5-formyluracil and 5-hydroxymethyluracil [Ralstonia solanacearum CMR15] Length = 214 Score = 337 bits (863), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 161/212 (75%), Positives = 181/212 (85%) Query: 1 MNPTKRREIFERLRQANPTPTTELEYTTPFELLIAVLLSAQATDVSVNKATRKLYPVANT 60 MNP KRR +FE LR+ NPTPTTELEYTTPFELLIAVLLSAQATDV VNKATRKLYPVA+T Sbjct: 1 MNPAKRRALFETLREHNPTPTTELEYTTPFELLIAVLLSAQATDVGVNKATRKLYPVADT 60 Query: 61 PEAIYRMGVDQLMPYIQTIGLYRTKAKNVIETCRILIEEQGGQVPESREALEALPGVGRK 120 P + +G + L YI+TIGLYRTK K++++TCRIL+++ GGQVP R ALEALPGVGRK Sbjct: 61 PAKMLALGEEGLTAYIKTIGLYRTKCKHILQTCRILLDQYGGQVPRDRAALEALPGVGRK 120 Query: 121 TANVVLNTAFGHPTIAVDTHIFRVSNRTGLAPGKDVDEVERKLIKFVAPEFRQDAHHWLI 180 TANVVLNTAFG PTIAVDTHIFRV+NRTGLAPGK+V EVE KL+K V EFRQDAHHWLI Sbjct: 121 TANVVLNTAFGEPTIAVDTHIFRVANRTGLAPGKNVLEVELKLLKVVPEEFRQDAHHWLI 180 Query: 181 LHGRYTCIARKPQCWNCIIADLCEFKQKTPLP 212 LHGRY C ARKP+CW+C I LCEF+ KTP P Sbjct: 181 LHGRYVCRARKPECWHCAIEPLCEFRPKTPAP 212 >ref|YP_003812458.1| Endonuclease III [gamma proteobacterium HdN1] emb|CBL46823.1| Endonuclease III [gamma proteobacterium HdN1] Length = 218 Score = 336 bits (862), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 156/215 (72%), Positives = 183/215 (85%) Query: 1 MNPTKRREIFERLRQANPTPTTELEYTTPFELLIAVLLSAQATDVSVNKATRKLYPVANT 60 MN TKRREIF+R + ANP PTTELEY +PFELLIAV+LSAQATDVSVNKATRKL+PVANT Sbjct: 1 MNATKRREIFQRFQAANPHPTTELEYNSPFELLIAVILSAQATDVSVNKATRKLFPVANT 60 Query: 61 PEAIYRMGVDQLMPYIQTIGLYRTKAKNVIETCRILIEEQGGQVPESREALEALPGVGRK 120 PE+++ +GVD L YI+TIGL+ +KA+N+I+TC IL+E +VP SREALEALPGVGRK Sbjct: 61 PESLFALGVDGLKAYIKTIGLFNSKAENIIKTCAILLEHHNAEVPNSREALEALPGVGRK 120 Query: 121 TANVVLNTAFGHPTIAVDTHIFRVSNRTGLAPGKDVDEVERKLIKFVAPEFRQDAHHWLI 180 TANVVLNTAFG PT+AVDTHIFRV+NRTG+APGK V EVE KL++++ EF QDAHHWLI Sbjct: 121 TANVVLNTAFGQPTMAVDTHIFRVANRTGIAPGKTVLEVENKLLRYIPKEFLQDAHHWLI 180 Query: 181 LHGRYTCIARKPQCWNCIIADLCEFKQKTPLPTKG 215 LHGRYTCIARKP C C+I DLCE+K K +P K Sbjct: 181 LHGRYTCIARKPHCATCLIEDLCEYKDKYYVPEKN 215