BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0127.p (545 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775020.1| medium-chain-fatty-acid CoA ligase [Herbaspi... 1125 0.0 gb|EGW62287.1| AMP-dependent synthetase and ligase [Dechlorosoma... 756 0.0 ref|YP_004847238.1| AMP-dependent synthetase and ligase [Pseudog... 697 0.0 gb|EGW62605.1| AMP-dependent synthetase and ligase [Dechlorosoma... 684 0.0 ref|YP_284122.1| acyl-CoA synthetase [Dechloromonas aromatica RC... 676 0.0 ref|YP_840855.1| Acyl-CoA synthetase (AMP-forming)/AMP-acid liga... 676 0.0 ref|YP_002028449.1| AMP-dependent synthetase and ligase [Stenotr... 664 0.0 ref|YP_003606943.1| AMP-dependent synthetase and ligase [Burkhol... 662 0.0 ref|YP_001972367.1| putative AMP-binding enzyme [Stenotrophomona... 654 0.0 ref|ZP_03267744.1| AMP-dependent synthetase and ligase [Burkhold... 652 0.0 >ref|YP_003775020.1| medium-chain-fatty-acid CoA ligase [Herbaspirillum seropedicae SmR1] gb|ADJ63112.1| medium-chain-fatty-acid CoA ligase protein [Herbaspirillum seropedicae SmR1] Length = 545 Score = 1125 bits (2909), Expect = 0.0, Method: Compositional matrix adjust. Identities = 544/545 (99%), Positives = 544/545 (99%) Query: 1 MPQAIHQTPSAYGYPLLIKQLLHSALATASGQEIIYGQRRLSYAGFYERVQRLANALKEM 60 MPQAIHQTPSAYGYPLLIKQLLHSALATASGQEIIYGQRRLSYAGFYERVQRLANALKEM Sbjct: 1 MPQAIHQTPSAYGYPLLIKQLLHSALATASGQEIIYGQRRLSYAGFYERVQRLANALKEM 60 Query: 61 GLQPGNTVAVMDWDSNRYLECFFAVPMMGCVLQTVNVRLSPEQIAYTLNHAQADVLLVNS 120 GLQPGNTVAVMDWDSNRYLECFFAVPMMGCVLQTVNVRLSPEQIAYTLNHAQADVLLVNS Sbjct: 61 GLQPGNTVAVMDWDSNRYLECFFAVPMMGCVLQTVNVRLSPEQIAYTLNHAQADVLLVNS 120 Query: 121 DFLPLLKQIRGELTTLTRCVWLTDDATPCPRGPGFAGEYEELLAQAEPACDFPDFDENAR 180 DFLPLLKQIRGELTTLTRCVWLTDDATPCPRGPGFAGEYEELLAQAEPACDFPDFDENAR Sbjct: 121 DFLPLLKQIRGELTTLTRCVWLTDDATPCPRGPGFAGEYEELLAQAEPACDFPDFDENAR 180 Query: 181 ATTFYTTGTTGLPKGVYFSHRQLVLHTLATTAGLALAPQQGRFHRDDVYMPLTPMFHVHA 240 ATTFYTTGTTGLPKGVYFSHRQLVLHTLATTAGLALAPQQGRFHRDDVYMPLTPMFHVHA Sbjct: 181 ATTFYTTGTTGLPKGVYFSHRQLVLHTLATTAGLALAPQQGRFHRDDVYMPLTPMFHVHA 240 Query: 241 WGLPYVATMAGVKQVYPGRYVPDTICRLIREEKVTFSHCVPTILQMVLTSEQAREADLSS 300 WGLPYVATMAGVKQVYPGRYVPDTICRLIREEKVTFSHCVPTILQMVLTSEQAREADLS Sbjct: 241 WGLPYVATMAGVKQVYPGRYVPDTICRLIREEKVTFSHCVPTILQMVLTSEQAREADLSG 300 Query: 301 WKMIIGGSAMTGSLAKMARDRGIDVFTGYGMSETCPVLTLAQVPTEELGGEREAAIRVKT 360 WKMIIGGSAMTGSLAKMARDRGIDVFTGYGMSETCPVLTLAQVPTEELGGEREAAIRVKT Sbjct: 301 WKMIIGGSAMTGSLAKMARDRGIDVFTGYGMSETCPVLTLAQVPTEELGGEREAAIRVKT 360 Query: 361 GRPLPLVDLRTVDGEMQDCPRDGSTTGEVVVRAPWLTQGYLHQAEASEELWRGGWLHTQD 420 GRPLPLVDLRTVDGEMQDCPRDGSTTGEVVVRAPWLTQGYLHQAEASEELWRGGWLHTQD Sbjct: 361 GRPLPLVDLRTVDGEMQDCPRDGSTTGEVVVRAPWLTQGYLHQAEASEELWRGGWLHTQD 420 Query: 421 IGHLDAEGYLQVTDRIKDVIKTGGEWVSSLQIEDIIARHPAVAETAVIGIQDGKWGERPV 480 IGHLDAEGYLQVTDRIKDVIKTGGEWVSSLQIEDIIARHPAVAETAVIGIQDGKWGERPV Sbjct: 421 IGHLDAEGYLQVTDRIKDVIKTGGEWVSSLQIEDIIARHPAVAETAVIGIQDGKWGERPV 480 Query: 481 ALVVLKKDAAAVSEDDIREHVRAAAEAGAISRYGVPDRVRFVAELARTSVGKLNKRVMRE 540 ALVVLKKDAAAVSEDDIREHVRAAAEAGAISRYGVPDRVRFVAELARTSVGKLNKRVMRE Sbjct: 481 ALVVLKKDAAAVSEDDIREHVRAAAEAGAISRYGVPDRVRFVAELARTSVGKLNKRVMRE 540 Query: 541 QYPSS 545 QYPSS Sbjct: 541 QYPSS 545 >gb|EGW62287.1| AMP-dependent synthetase and ligase [Dechlorosoma suillum PS] Length = 547 Score = 756 bits (1952), Expect = 0.0, Method: Compositional matrix adjust. Identities = 382/543 (70%), Positives = 439/543 (80%), Gaps = 6/543 (1%) Query: 3 QAIHQTPSAYGYPLLIKQLLHSALATASGQEIIYGQR-RLSYAGFYERVQRLANALKEMG 61 Q I TPSAY YPLLIKQLLH+ LATA QEI+YG + R +Y R+ R +AL +G Sbjct: 4 QPIQVTPSAYTYPLLIKQLLHTPLATAPQQEIVYGDKVRHTYRDLALRINRQGHALSRLG 63 Query: 62 LQPGNTVAVMDWDSNRYLECFFAVPMMGCVLQTVNVRLSPEQIAYTLNHAQADVLLVNSD 121 +Q G+TVAVMDWDS+RYLECFF VPM+G VLQTVNVRLSP+QI YTLNHAQA VLLVN + Sbjct: 64 VQGGDTVAVMDWDSHRYLECFFGVPMLGAVLQTVNVRLSPDQILYTLNHAQASVLLVNRE 123 Query: 122 FLPLLKQIRGELTTLTRCVWLTDDATPCPRGPGFAGEYEELLAQAEPACDFPDFDENARA 181 FLP+L QIRGEL T+ R V L D+ P G FAGEYE LL DFPDFDEN+RA Sbjct: 124 FLPVLAQIRGELATVKRFVLLDDEGGDLPEG--FAGEYEALLIDCPDHYDFPDFDENSRA 181 Query: 182 TTFYTTGTTGLPKGVYFSHRQLVLHTLATTAGLALAPQQGRFHRDDVYMPLTPMFHVHAW 241 TTFYTTGTTGLPKGVYFSHRQLVLHTLA + LALAPQQG FHRDD+YMPLTPMFHVHAW Sbjct: 182 TTFYTTGTTGLPKGVYFSHRQLVLHTLAVCSALALAPQQGGFHRDDIYMPLTPMFHVHAW 241 Query: 242 GLPYVATMAGVKQVYPGRYVPDTICRLIREEKVTFSHCVPTILQMVLTSEQAREADLSSW 301 G+PY+AT+AGVKQVYPGRY P+ I +LI +E+VTFSHCVPTIL M+L + ++ DLS W Sbjct: 242 GMPYIATLAGVKQVYPGRYQPEAILKLIEKEQVTFSHCVPTILHMLLLTPYGKQVDLSRW 301 Query: 302 KMIIGGSAMTGSLAKMARDRGIDVFTGYGMSETCPVLTLAQVPTEELGGEREA--AIRVK 359 K+IIGGSA+T LAK A +RGIDVFTGYGMSETCP+LTLAQ+ L + +A A+RVK Sbjct: 302 KVIIGGSALTTGLAKAALERGIDVFTGYGMSETCPILTLAQMEDPALLADADANVAVRVK 361 Query: 360 TGRPLPLVDLRTVDGEMQDCPRDGSTTGEVVVRAPWLTQGYLHQAEASEELWRGGWLHTQ 419 TGRP+PLV LRTVD +M DCPRDG + GEVVVRAPWLTQGYL+ EASE LW GGWLHTQ Sbjct: 362 TGRPVPLVALRTVDAQMGDCPRDGKSAGEVVVRAPWLTQGYLYNPEASEHLWDGGWLHTQ 421 Query: 420 DIGHLDAEGYLQVTDRIKDVIKTGGEWVSSLQIEDIIARHPAVAETAVIGIQDGKWGERP 479 DIGH+D +GYLQVTDRIKDVIKTGGEWVSSL++ED+I RHP V+E AVIG+ D KWGERP Sbjct: 422 DIGHIDPQGYLQVTDRIKDVIKTGGEWVSSLELEDLIGRHPGVSEVAVIGVPDEKWGERP 481 Query: 480 VALVVLKKD-AAAVSEDDIREHVRAAAEAGAISRYGVPDRVRFVAELARTSVGKLNKRVM 538 +ALVVLK + A VS DI+ HV+ A+ G IS+YGVP+ VRF+A LARTSVGKLNKR M Sbjct: 482 LALVVLKPEFADQVSAADIQAHVKVFADQGHISKYGVPENVRFLASLARTSVGKLNKRAM 541 Query: 539 REQ 541 REQ Sbjct: 542 REQ 544 >ref|YP_004847238.1| AMP-dependent synthetase and ligase [Pseudogulbenkiania sp. NH8B] dbj|BAK76824.1| AMP-dependent synthetase and ligase [Pseudogulbenkiania sp. NH8B] Length = 547 Score = 697 bits (1800), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/545 (64%), Positives = 424/545 (77%), Gaps = 7/545 (1%) Query: 3 QAIHQTPSAYGYPLLIKQLLHSALATASGQEIIYG-QRRLSYAGFYERVQRLANALKEMG 61 + I TPSAY YPLLIKQLLH+ LA A QEI+Y +RR +Y R+ RL +AL +G Sbjct: 4 EKITVTPSAYTYPLLIKQLLHTPLAVAPEQEIVYADKRRYTYRELSRRIGRLGHALTRLG 63 Query: 62 LQPGNTVAVMDWDSNRYLECFFAVPMMGCVLQTVNVRLSPEQIAYTLNHAQADVLLVNSD 121 ++ G+TVAVMDWDS+RYLECFF VPM+G VLQ VNVRLSPEQI YTLNHA A+V+LVN D Sbjct: 64 VRGGSTVAVMDWDSHRYLECFFGVPMLGAVLQMVNVRLSPEQILYTLNHAGAEVVLVNQD 123 Query: 122 FLPLLKQIRGELTTLTRCVWLTDDATPCPRGPGFAGEYEELLAQAEPACDFPDFDENARA 181 FLP+L+++R +L T V L+DD P G FAGEYE LLA DFPDFDEN RA Sbjct: 124 FLPVLEELRPQLDTAKTFVLLSDDDIALPGG--FAGEYESLLADCPDQYDFPDFDENTRA 181 Query: 182 TTFYTTGTTGLPKGVYFSHRQLVLHTLATTAGLALAPQQGRFHRDDVYMPLTPMFHVHAW 241 TTFYTTGTTG PKGVYFSHRQLVLHTLA L+L+P+QG FHRDDVYMPLTPMFHVHAW Sbjct: 182 TTFYTTGTTGQPKGVYFSHRQLVLHTLAVCNTLSLSPEQGGFHRDDVYMPLTPMFHVHAW 241 Query: 242 GLPYVATMAGVKQVYPGRYVPDTICRLIREEKVTFSHCVPTILQMVLTSEQAREADLSSW 301 GLPY+AT+AGVKQVYPGRY P +I +LIR+E VTF+H VPTIL M+L + +R+ DLS Sbjct: 242 GLPYIATLAGVKQVYPGRYHPSSILKLIRDEGVTFTHSVPTILTMLLVAPLSRDVDLSRL 301 Query: 302 KMIIGGSAMTGSLAKMARDRGIDVFTGYGMSETCPVLTLAQVPTEELGG---EREAAIRV 358 K++IGGSA+T +LA+ A +RGID+F GYGMSETCPV+ LAQ+ EL E + A RV Sbjct: 302 KVVIGGSALTSALARQALERGIDIFAGYGMSETCPVVALAQLDLAELAAADEEHQVATRV 361 Query: 359 KTGRPLPLVDLRTVDGEMQDCPRDGSTTGEVVVRAPWLTQGYLHQAEASEELWRGGWLHT 418 TGRP+ LVDLRTVD M+ CP+DG T GEVV+RAPW + GY + +ASE+LW GGWLHT Sbjct: 362 CTGRPVSLVDLRTVDARMESCPKDGKTAGEVVLRAPWASMGYYNNPQASEQLWSGGWLHT 421 Query: 419 QDIGHLDAEGYLQVTDRIKDVIKTGGEWVSSLQIEDIIARHPAVAETAVIGIQDGKWGER 478 QDIGH+D+ GYLQVTDRIKDVIKTGGEWVSSL++E++++RHP V E AVIG+ D KWGER Sbjct: 422 QDIGHIDSRGYLQVTDRIKDVIKTGGEWVSSLELEEMLSRHPGVREAAVIGVPDEKWGER 481 Query: 479 PVALVVLKKD-AAAVSEDDIREHVRAAAEAGAISRYGVPDRVRFVAELARTSVGKLNKRV 537 P+ALVV D A A++ ++++ HV E G IS+Y VP+RV FV +LA+TSVGKLNK Sbjct: 482 PLALVVPNPDYAGALTVEELQAHVMTFVEQGLISKYAVPERVLFVEQLAKTSVGKLNKLA 541 Query: 538 MREQY 542 +R QY Sbjct: 542 LRSQY 546 >gb|EGW62605.1| AMP-dependent synthetase and ligase [Dechlorosoma suillum PS] Length = 558 Score = 684 bits (1764), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/549 (63%), Positives = 417/549 (75%), Gaps = 8/549 (1%) Query: 1 MP-QAIHQTPSAYGYPLLIKQLLHSALATASGQEIIYGQR-RLSYAGFYERVQRLANALK 58 MP Q I TPSAY YPLLIK LLH+ LA A QEI+Y R +Y +R+ RLANAL Sbjct: 1 MPVQLIETTPSAYSYPLLIKHLLHTPLAHAPDQEIVYRDSVRYTYRTLQQRIGRLANALA 60 Query: 59 EMGLQPGNTVAVMDWDSNRYLECFFAVPMMGCVLQTVNVRLSPEQIAYTLNHAQADVLLV 118 +G++PG+TVA+MDWDS+RYLECFFAVPMMG VLQTVNVRL+ EQ+ YTLNHA+ADV+LV Sbjct: 61 ALGVEPGHTVAMMDWDSHRYLECFFAVPMMGAVLQTVNVRLTAEQMLYTLNHARADVVLV 120 Query: 119 NSDFLPLLKQIRGELTTLTRCVWLTDDATPCPR--GP-GFAGEYEELLAQAEPACDFPDF 175 NS+F PLL+ + L ++ V + D + P FAGEYEELLA A DFPDF Sbjct: 121 NSEFFPLLQAMAERLESVKTFVLIHGDHENPEKMQAPVSFAGEYEELLAAAATDYDFPDF 180 Query: 176 DENARATTFYTTGTTGLPKGVYFSHRQLVLHTLATTAGLALAPQQGRFHRDDVYMPLTPM 235 DENA+ATTFYTTGTTGLPKGVYFSHRQLV+HT+ GL AP QGR HRDDVYMP+TPM Sbjct: 181 DENAKATTFYTTGTTGLPKGVYFSHRQLVMHTMGAATGLGTAPVQGRLHRDDVYMPITPM 240 Query: 236 FHVHAWGLPYVATMAGVKQVYPGRYVPDTICRLIREEKVTFSHCVPTILQMVLTSEQARE 295 FHVHAWGLPYVATM G+KQVYPGRY P+ + RL E+VTFSHCVPTIL M+L ARE Sbjct: 241 FHVHAWGLPYVATMLGLKQVYPGRYQPEVLLRLKARERVTFSHCVPTILHMLLNHALARE 300 Query: 296 ADLSSWKMIIGGSAMTGSLAKMARDRGIDVFTGYGMSETCPVLTLAQVPTEELGG--ERE 353 DLS WK++IGGSA+ ++A A ++GIDVFTGYGMSETCP+L++A +PT +L + Sbjct: 301 TDLSGWKVMIGGSALPQAMAVAALEKGIDVFTGYGMSETCPILSVAHLPTAKLQAPLAEQ 360 Query: 354 AAIRVKTGRPLPLVDLRTVDGEMQDCPRDGSTTGEVVVRAPWLTQGYLHQAEASEELWRG 413 AA+R +TG PLPLVDLR VD EM+ P DG GE+VVR+PWLTQGYL A+EELW G Sbjct: 361 AALRARTGLPLPLVDLRIVDPEMRPQPHDGQAVGELVVRSPWLTQGYLKDPAAAEELWGG 420 Query: 414 GWLHTQDIGHLDAEGYLQVTDRIKDVIKTGGEWVSSLQIEDIIARHPAVAETAVIGIQDG 473 G+LHT DIG++DA G +Q+TDRIKDVIKTGGEW SSLQ+EDII +HPAV E AVIG++D Sbjct: 421 GYLHTADIGNIDANGSIQITDRIKDVIKTGGEWTSSLQLEDIIGQHPAVHEVAVIGVKDE 480 Query: 474 KWGERPVALVVLKKDA-AAVSEDDIREHVRAAAEAGAISRYGVPDRVRFVAELARTSVGK 532 KWGERP+ALVVLK + V+E IR H AE +SRYGV +V FV LARTS+GK Sbjct: 481 KWGERPLALVVLKPEMEGQVTEHAIRNHAAHLAETLGVSRYGVLMQVSFVKTLARTSIGK 540 Query: 533 LNKRVMREQ 541 +NKR MRE Sbjct: 541 INKRFMREN 549 >ref|YP_284122.1| acyl-CoA synthetase [Dechloromonas aromatica RCB] gb|AAZ45652.1| AMP-dependent synthetase and ligase [Dechloromonas aromatica RCB] Length = 552 Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/545 (63%), Positives = 414/545 (75%), Gaps = 7/545 (1%) Query: 1 MP-QAIHQTPSAYGYPLLIKQLLHSALATASGQEIIY-GQRRLSYAGFYERVQRLANALK 58 MP + + T SAY YPLLIKQLL + LA A QEI Y G+ R +Y ER+ RLAN L Sbjct: 1 MPIKLVQSTVSAYQYPLLIKQLLLTPLAIAPEQEITYQGKLRYNYRTLNERIGRLANVLT 60 Query: 59 EMGLQPGNTVAVMDWDSNRYLECFFAVPMMGCVLQTVNVRLSPEQIAYTLNHAQADVLLV 118 +G++ G TVA+MDWDS+RYLECFFAVPMMG +LQTVNVRLSPEQI YTLNHA+ADVLLV Sbjct: 61 GLGVESGQTVAMMDWDSHRYLECFFAVPMMGAILQTVNVRLSPEQILYTLNHAKADVLLV 120 Query: 119 NSDFLPLLKQIRGELTTLTRCVWLTDDATPCPRGP-GFAGEYEELLAQAEPACDFPDFDE 177 NS+F +L QI G+L T+ + ++D+A P P GEYE LLA+A P DFPDFDE Sbjct: 121 NSEFFAILTQIAGQLETVKTIILISDEAE-LPIAPVAMVGEYEALLAEASPDYDFPDFDE 179 Query: 178 NARATTFYTTGTTGLPKGVYFSHRQLVLHTLATTAGLALAPQQGRFHRDDVYMPLTPMFH 237 NA+ATTFYTTGTTG PKGVYFSHRQLVLHTL A L A +QG HR+DVYMP+TPMFH Sbjct: 180 NAQATTFYTTGTTGNPKGVYFSHRQLVLHTLGCAAALGGANRQGHIHREDVYMPMTPMFH 239 Query: 238 VHAWGLPYVATMAGVKQVYPGRYVPDTICRLIREEKVTFSHCVPTILQMVLTSEQAREAD 297 VHAWG PY+ATM GVKQVYPGRY P+ ICRLI E V+FSHCVPTIL M+L+ A+ AD Sbjct: 240 VHAWGFPYLATMMGVKQVYPGRYQPEVICRLISTEGVSFSHCVPTILHMILSHPHAKTAD 299 Query: 298 LSSWKMIIGGSAMTGSLAKMARDRGIDVFTGYGMSETCPVLTLAQVPTEELGG--EREAA 355 + K++IGG+AM ++A A+ RG+D+FTGYGMSETCPVL++A + + +L E +A Sbjct: 300 FTGLKILIGGAAMPEAMAISAQKRGMDLFTGYGMSETCPVLSMAHLESADLNRSLEEQAV 359 Query: 356 IRVKTGRPLPLVDLRTVDGEMQDCPRDGSTTGEVVVRAPWLTQGYLHQAEASEELWRGGW 415 IR KTGRPLPLVDLR VD EM D P DG TGEVVVRAPWLTQGY+ E SE LW GG+ Sbjct: 360 IRAKTGRPLPLVDLRIVDPEMADVPHDGKATGEVVVRAPWLTQGYVSAPEDSEGLWAGGY 419 Query: 416 LHTQDIGHLDAEGYLQVTDRIKDVIKTGGEWVSSLQIEDIIARHPAVAETAVIGIQDGKW 475 LHT DIG+++ GYL+VTDRIKDVIKTGGEW SSLQ+EDIIA+H AV E AVIG+ D KW Sbjct: 420 LHTADIGNINPAGYLKVTDRIKDVIKTGGEWTSSLQLEDIIAKHEAVNEVAVIGVPDDKW 479 Query: 476 GERPVALVVLKKD-AAAVSEDDIREHVRAAAEAGAISRYGVPDRVRFVAELARTSVGKLN 534 GERP+ALV+LK + ++E +R + A EA ISRYGV +V FV L +TSVGK+N Sbjct: 480 GERPLALVLLKPEHVGQITEHALRNYAAHAIEAAGISRYGVLLQVSFVKTLVKTSVGKMN 539 Query: 535 KRVMR 539 KR+MR Sbjct: 540 KRLMR 544 >ref|YP_840855.1| Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II [Ralstonia eutropha H16] emb|CAJ96125.1| Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II [Ralstonia eutropha H16] Length = 562 Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/546 (62%), Positives = 417/546 (76%), Gaps = 6/546 (1%) Query: 2 PQAIHQTPSAYGYPLLIKQLLHSALATASGQEIIY-GQRRLSYAGFYERVQRLANALKEM 60 P IH+TPSAY YPLLIKQLLH+ LA QEI+Y GQ R SY R+ +LA+ L+ + Sbjct: 4 PTPIHRTPSAYAYPLLIKQLLHAPLAVNPEQEIVYRGQVRHSYWTMRHRIGQLASGLQSL 63 Query: 61 GLQPGNTVAVMDWDSNRYLECFFAVPMMGCVLQTVNVRLSPEQIAYTLNHAQADVLLVNS 120 G+ G+TVAVMDWDS+RYLE +F +PMMG VL TVNVRLSPEQIAYTLNHA +L+V++ Sbjct: 64 GIAQGDTVAVMDWDSHRYLESYFGIPMMGAVLMTVNVRLSPEQIAYTLNHAGVRLLMVHA 123 Query: 121 DFLPLLKQIRGELTTLTRCVWLTDDATPCPRGP---GFAGEYEELLAQAEPACDFPDFDE 177 DFLP++ IR +L ++ V + DD P GF EYE LLA + P FPDFDE Sbjct: 124 DFLPVVAAIRDQLESVECLVLIGDDTLSLESAPLAEGFVAEYETLLAASPPDYPFPDFDE 183 Query: 178 NARATTFYTTGTTGLPKGVYFSHRQLVLHTLATTAGLALAPQQGRFHRDDVYMPLTPMFH 237 NARATTFYTTGTTGLPKGVYFSHRQ+VLHTLAT A L AP QGR HRDDVYMPLTPMFH Sbjct: 184 NARATTFYTTGTTGLPKGVYFSHRQIVLHTLATMAALTSAPTQGRVHRDDVYMPLTPMFH 243 Query: 238 VHAWGLPYVATMAGVKQVYPGRYVPDTICRLIREEKVTFSHCVPTILQMVLTSEQAREAD 297 VHAWG+P+VAT G+KQVYPGRY D + +L++ E++TFSH VPT+L M+L+ + D Sbjct: 244 VHAWGMPFVATALGMKQVYPGRYAADQLLQLVQSERITFSHGVPTLLNMILSHPDSAAVD 303 Query: 298 LSSWKMIIGGSAMTGSLAKMARDRGIDVFTGYGMSETCPVLTLAQVPTEELGGE-REAAI 356 LS K+I+GGSA+ LA+ A DRGIDVFTGYGMSETCP+LTLAQV T LG E + Sbjct: 304 LSGMKIIVGGSALPRGLAQAAIDRGIDVFTGYGMSETCPILTLAQVKTSLLGNATTELDV 363 Query: 357 RVKTGRPLPLVDLRTVDGEMQDCPRDGSTTGEVVVRAPWLTQGYLHQAEASEELWRGGWL 416 R KTG P+PLVDLR VD EM+D DG +GE+VVRAPWLTQGY A SE LW GG+L Sbjct: 364 RTKTGLPVPLVDLRIVDDEMRDIAHDGKASGEIVVRAPWLTQGYFGNAAESEHLWAGGYL 423 Query: 417 HTQDIGHLDAEGYLQVTDRIKDVIKTGGEWVSSLQIEDIIARHPAVAETAVIGIQDGKWG 476 HT DIG +D++GYLQVTDRIKDVIK+GGEWVSSL++ED+I+RH AV+E AVIGI+D +WG Sbjct: 424 HTNDIGSIDSDGYLQVTDRIKDVIKSGGEWVSSLELEDLISRHAAVSEVAVIGIKDARWG 483 Query: 477 ERPVALVVLKKDAAAVSEDDIREHVRAAAEAGAISRYGVPDRVRFVAELARTSVGKLNKR 536 ERP+ L+VL+ +A +E +I+EH+R GAIS+Y VP+RV FV + +TSVGK+NKR Sbjct: 484 ERPLPLIVLRPGQSAGAE-EIQEHLRDFVRRGAISKYAVPERVLFVEAIEKTSVGKINKR 542 Query: 537 VMREQY 542 ++R++Y Sbjct: 543 LLRDKY 548 >ref|YP_002028449.1| AMP-dependent synthetase and ligase [Stenotrophomonas maltophilia R551-3] gb|ACF51766.1| AMP-dependent synthetase and ligase [Stenotrophomonas maltophilia R551-3] Length = 546 Score = 664 bits (1712), Expect = 0.0, Method: Compositional matrix adjust. Identities = 330/533 (61%), Positives = 395/533 (74%), Gaps = 5/533 (0%) Query: 9 PSAYGYPLLIKQLLHSALATASGQEIIYGQR-RLSYAGFYERVQRLANALKEMGLQPGNT 67 P A YPLLIKQLLH+ LA QEI+YG R Y R+ +LA L +G++ G+T Sbjct: 5 PDASAYPLLIKQLLHTPLAVNPDQEIVYGDSVRFDYRTLQARICQLAGLLTSLGVKHGDT 64 Query: 68 VAVMDWDSNRYLECFFAVPMMGCVLQTVNVRLSPEQIAYTLNHAQADVLLVNSDFLPLLK 127 VAVMDWDSNRYLE +FAVPM+G VL VNVRL+PEQIAYTLNH+ A V+L N +FLP+L+ Sbjct: 65 VAVMDWDSNRYLEAYFAVPMIGAVLMMVNVRLAPEQIAYTLNHSGARVILANREFLPILE 124 Query: 128 QIRGELTTLTRCVWLTDDATPCPRGPGFAGEYEELLAQAEPACDFPDFDENARATTFYTT 187 I G+L L + L D P P G F EYE L A DFPDFDEN RAT FYTT Sbjct: 125 GIDGQLPDLRTRILLDDAGGPLPDG--FVTEYEAGLRTATATTDFPDFDENTRATVFYTT 182 Query: 188 GTTGLPKGVYFSHRQLVLHTLATTAGLALAPQQGRFHRDDVYMPLTPMFHVHAWGLPYVA 247 GTTGLPKGVYFSHRQLVLH+LA A L A QGR HR DVYMP+TPMFHVHAWGLPYVA Sbjct: 183 GTTGLPKGVYFSHRQLVLHSLAGMAALGSAASQGRLHRGDVYMPITPMFHVHAWGLPYVA 242 Query: 248 TMAGVKQVYPGRYVPDTICRLIREEKVTFSHCVPTILQMVLTSEQAREADLSSWKMIIGG 307 T+ G+KQVYPGRY+P ++ LI EKVTFSHCVPTIL M+L A E DL +WK+IIGG Sbjct: 243 TLLGIKQVYPGRYLPASLLALIAREKVTFSHCVPTILHMLLEHPLAAETDLGNWKVIIGG 302 Query: 308 SAMTGSLAKMARDRGIDVFTGYGMSETCPVLTLAQVPTEELGGEREA-AIRVKTGRPLPL 366 +A+ +LA+ A RGID+F GYGMSETCP+LTLAQ+ + + E ++R K G P+PL Sbjct: 303 AALPRALAQRALARGIDIFGGYGMSETCPLLTLAQIDADAVTDTDEVLSLRTKAGIPVPL 362 Query: 367 VDLRTVDGEMQDCPRDGSTTGEVVVRAPWLTQGYLHQAEASEELWRGGWLHTQDIGHLDA 426 VDLR VD +M+D DG TGEVVVRAPWLTQGYLH +AS LW GG+LHT DIG++D+ Sbjct: 363 VDLRIVDPDMKDVAHDGMATGEVVVRAPWLTQGYLHNPDASAALWAGGYLHTGDIGNIDS 422 Query: 427 EGYLQVTDRIKDVIKTGGEWVSSLQIEDIIARHPAVAETAVIGIQDGKWGERPVALVVLK 486 GYL+VTDRIKDVIKTGGEW+SSL +EDIIA HPAV+E AVIGI D KWGERP+ LVV + Sbjct: 423 GGYLRVTDRIKDVIKTGGEWISSLALEDIIALHPAVSEVAVIGIADTKWGERPLPLVV-R 481 Query: 487 KDAAAVSEDDIREHVRAAAEAGAISRYGVPDRVRFVAELARTSVGKLNKRVMR 539 + + V+E +I E V A + +G ISRY +P+RV FV + RTSVGK+NK+ +R Sbjct: 482 QPGSEVTEAEIIELVAARSRSGDISRYAIPERVSFVESIERTSVGKINKKKLR 534 >ref|YP_003606943.1| AMP-dependent synthetase and ligase [Burkholderia sp. CCGE1002] gb|ADG17432.1| AMP-dependent synthetase and ligase [Burkholderia sp. CCGE1002] Length = 547 Score = 662 bits (1708), Expect = 0.0, Method: Compositional matrix adjust. Identities = 329/532 (61%), Positives = 410/532 (77%), Gaps = 7/532 (1%) Query: 16 LLIKQLLHSALATASGQEIIY-GQRRLSYAGFYERVQRLANALKEMGLQPGNTVAVMDWD 74 LLIKQLLH+ A Q+I+Y GQ R++Y ER+ RLAN L +G + G+TVAVMDWD Sbjct: 17 LLIKQLLHTPFVQAPDQQIVYRGQHRMTYTTLRERIARLANGLSRLGARHGSTVAVMDWD 76 Query: 75 SNRYLECFFAVPMMGCVLQTVNVRLSPEQIAYTLNHAQADVLLVNSDFLPLLKQIRGELT 134 S+RYLEC+FAVPMMG VLQTVNVRLSP++IAYT+NHA A++L V++DFLPL++ I+G+L Sbjct: 77 SHRYLECYFAVPMMGAVLQTVNVRLSPDEIAYTINHAGAEILFVHTDFLPLVEAIKGQLE 136 Query: 135 TLTRCVWLTDDAT-PCPRGPGFAGEYEELLAQAEPACDFPDFDENARATTFYTTGTTGLP 193 T+ VW+ + + F+ EYE +L ++ +FPDFDEN RATTFYTTGTTGLP Sbjct: 137 TVRTFVWIDEQGSEAAAHSIPFSAEYEAMLEESSDRYEFPDFDENTRATTFYTTGTTGLP 196 Query: 194 KGVYFSHRQLVLHTLATTAGLALAPQQG-RFHRDDVYMPLTPMFHVHAWGLPYVATMAGV 252 KGVYFSHRQLVLHT+ A LA +P+ G RFHR DVYMPLTPMFHVHAWG+PY+ATM GV Sbjct: 197 KGVYFSHRQLVLHTITGMAALA-SPESGQRFHRGDVYMPLTPMFHVHAWGMPYIATMLGV 255 Query: 253 KQVYPGRYVPDTICRLIREEKVTFSHCVPTILQMVLTSEQAREADLSSWKMIIGGSAMTG 312 KQVYPGRY+PD + +L+R+E VTFSHCV TIL M+L EQAR D S WK++IGG A+T Sbjct: 256 KQVYPGRYLPDRLVKLVRDEGVTFSHCVSTILHMILGCEQARSVDFSKWKIVIGGGALTH 315 Query: 313 SLAKMARDRGIDVFTGYGMSETCPVLTLAQVP--TEELGGEREAAIRVKTGRPLPLVDLR 370 LA+ A +RGID+F GYGMSETCP+L+LAQ+P E L + + +R TGRP+PLVDLR Sbjct: 316 GLARAALERGIDIFAGYGMSETCPLLSLAQLPPGAEALDADEQLRLRCTTGRPIPLVDLR 375 Query: 371 TVDGEMQDCPRDGSTTGEVVVRAPWLTQGYLHQAEASEELWRGGWLHTQDIGHLDAEGYL 430 VD M++ DGS GE+VVRAPWLTQGYL+ EAS +LW GG+LHTQDI + G + Sbjct: 376 IVDQSMEEAAHDGSAYGEIVVRAPWLTQGYLNNPEASVQLWSGGYLHTQDIATISPSGSI 435 Query: 431 QVTDRIKDVIKTGGEWVSSLQIEDIIARHPAVAETAVIGIQDGKWGERPVALVVLKKDAA 490 Q+TDR+KDVIK+GGEW+SSL+IE +I+ +P V+E AVIGI D KWGERPVALVVL + A Sbjct: 436 QITDRLKDVIKSGGEWISSLEIESLISLYPGVSEVAVIGISDEKWGERPVALVVL-SEGA 494 Query: 491 AVSEDDIREHVRAAAEAGAISRYGVPDRVRFVAELARTSVGKLNKRVMREQY 542 AVSEDDI+ HV +E+G IS+Y VP VRFV L +TSVGKLNK+ +R Q+ Sbjct: 495 AVSEDDIKRHVLTFSESGRISKYAVPQIVRFVDALEKTSVGKLNKKWLRAQF 546 >ref|YP_001972367.1| putative AMP-binding enzyme [Stenotrophomonas maltophilia K279a] emb|CAQ46072.1| putative AMP-binding enzyme [Stenotrophomonas maltophilia K279a] Length = 548 Score = 654 bits (1686), Expect = 0.0, Method: Compositional matrix adjust. Identities = 334/534 (62%), Positives = 393/534 (73%), Gaps = 5/534 (0%) Query: 8 TPSAYGYPLLIKQLLHSALATASGQEIIYG-QRRLSYAGFYERVQRLANALKEMGLQPGN 66 TP A+ YPLLIKQLL LA + QEI+YG Q R Y R+ +LA L +G+ G+ Sbjct: 6 TPDAHAYPLLIKQLLLMPLAVSPEQEIVYGDQLRFDYRTLQARIGQLAGLLTSLGVGHGD 65 Query: 67 TVAVMDWDSNRYLECFFAVPMMGCVLQTVNVRLSPEQIAYTLNHAQADVLLVNSDFLPLL 126 TVAVMDWDSNRYLE +FAVPM+G VL VNVRL+PEQIAYTLNH+ A V+L N +FLPLL Sbjct: 66 TVAVMDWDSNRYLEAYFAVPMIGAVLMMVNVRLAPEQIAYTLNHSGARVILANREFLPLL 125 Query: 127 KQIRGELTTLTRCVWLTDDATPCPRGPGFAGEYEELLAQAEPACDFPDFDENARATTFYT 186 I +L L + L D P P PGFA EYE L A P FPDFDENARAT FYT Sbjct: 126 DAIDEQLPDLRTRILLDDAGGPPP--PGFATEYEAGLRGATPVVRFPDFDENARATVFYT 183 Query: 187 TGTTGLPKGVYFSHRQLVLHTLATTAGLALAPQQGRFHRDDVYMPLTPMFHVHAWGLPYV 246 TGTTGLPKGVYFSHRQLVLH+LA A L AP+QGR HRDDVYMP+TPMFHVHAWGLPYV Sbjct: 184 TGTTGLPKGVYFSHRQLVLHSLAAMAALGGAPRQGRLHRDDVYMPITPMFHVHAWGLPYV 243 Query: 247 ATMAGVKQVYPGRYVPDTICRLIREEKVTFSHCVPTILQMVLTSEQAREADLSSWKMIIG 306 AT G++QVYPGRY+P + LI EKVTFSHCVPTIL M+L A + DL WK+IIG Sbjct: 244 ATAMGIRQVYPGRYLPAKLLALIAREKVTFSHCVPTILHMLLEHPDAAQTDLEGWKVIIG 303 Query: 307 GSAMTGSLAKMARDRGIDVFTGYGMSETCPVLTLAQVPTEELGGEREA-AIRVKTGRPLP 365 G+A+ +LA+ A RGID+F GYGMSETCP+LT+AQ+ + + E ++R K G P+P Sbjct: 304 GAALPRALAQRALARGIDIFGGYGMSETCPLLTIAQIDVDSVTDADEVLSLRTKAGIPVP 363 Query: 366 LVDLRTVDGEMQDCPRDGSTTGEVVVRAPWLTQGYLHQAEASEELWRGGWLHTQDIGHLD 425 LVDLR VD +M D DG TGEVV RAPWLTQGYLH EAS LW GG+LHT DIG++D Sbjct: 364 LVDLRIVDPDMGDVVHDGVATGEVVARAPWLTQGYLHDPEASATLWAGGYLHTGDIGNID 423 Query: 426 AEGYLQVTDRIKDVIKTGGEWVSSLQIEDIIARHPAVAETAVIGIQDGKWGERPVALVVL 485 GYL+VTDRIKDVIKTGGEW+SSL +EDIIA HPAV+E AVIGI D KWGERP+ LVV Sbjct: 424 EAGYLRVTDRIKDVIKTGGEWISSLALEDIIALHPAVSEVAVIGIADTKWGERPLPLVV- 482 Query: 486 KKDAAAVSEDDIREHVRAAAEAGAISRYGVPDRVRFVAELARTSVGKLNKRVMR 539 K + V+E +I E V A + +G ISRY +P+RV FV + RTSVGK+NK+ +R Sbjct: 483 TKPGSHVAEAEIIELVAARSRSGDISRYAIPERVSFVDAIERTSVGKINKKKLR 536 >ref|ZP_03267744.1| AMP-dependent synthetase and ligase [Burkholderia sp. H160] gb|EEA00701.1| AMP-dependent synthetase and ligase [Burkholderia sp. H160] Length = 547 Score = 652 bits (1682), Expect = 0.0, Method: Compositional matrix adjust. Identities = 323/531 (60%), Positives = 403/531 (75%), Gaps = 5/531 (0%) Query: 16 LLIKQLLHSALATASGQEIIY-GQRRLSYAGFYERVQRLANALKEMGLQPGNTVAVMDWD 74 LLIKQLLH+ A QEI+Y GQ R++Y ER+ RLAN L +G + G TVAVMDWD Sbjct: 17 LLIKQLLHTPFVQAPDQEIVYRGQVRMTYTTLRERIARLANGLSWLGARHGTTVAVMDWD 76 Query: 75 SNRYLECFFAVPMMGCVLQTVNVRLSPEQIAYTLNHAQADVLLVNSDFLPLLKQIRGELT 134 S+RYLEC+FAVPMMG VLQTVNVRLSP++IAYT+NHA A++L V++DFLPL++ I+ L Sbjct: 77 SHRYLECYFAVPMMGAVLQTVNVRLSPDEIAYTINHAGAEILFVHTDFLPLVEAIKSRLE 136 Query: 135 TLTRCVWLTD-DATPCPRGPGFAGEYEELLAQAEPACDFPDFDENARATTFYTTGTTGLP 193 T+ +W+ D D+ FA EYE +L ++ +FPDFDEN RATTFYTTGTTGLP Sbjct: 137 TVRTFIWIDDEDSEVATHSIPFAAEYEAMLEESPDHYEFPDFDENTRATTFYTTGTTGLP 196 Query: 194 KGVYFSHRQLVLHTLATTAGLALAPQQGRFHRDDVYMPLTPMFHVHAWGLPYVATMAGVK 253 KGV+FSHRQLVLHT+ A L+ RFHR DVYMPLTPMFHVHAWG+PY+AT+ GVK Sbjct: 197 KGVFFSHRQLVLHTITGMAALSSPASGQRFHRGDVYMPLTPMFHVHAWGMPYIATVLGVK 256 Query: 254 QVYPGRYVPDTICRLIREEKVTFSHCVPTILQMVLTSEQAREADLSSWKMIIGGSAMTGS 313 QVYPGRY+PD + +L+R+E VTFSHCV TIL M+L E AR AD S WK++IGG A+T Sbjct: 257 QVYPGRYMPDRLVKLVRDEGVTFSHCVSTILHMMLGCEHARSADFSKWKIVIGGGALTHG 316 Query: 314 LAKMARDRGIDVFTGYGMSETCPVLTLAQVP--TEELGGEREAAIRVKTGRPLPLVDLRT 371 LA+ A +RGID+F GYGMSETCP+L+LAQ+P E L + + +R TGRP+PLVDLR Sbjct: 317 LARAALERGIDIFAGYGMSETCPLLSLAQLPPGAEALDAQEQLRLRCTTGRPVPLVDLRI 376 Query: 372 VDGEMQDCPRDGSTTGEVVVRAPWLTQGYLHQAEASEELWRGGWLHTQDIGHLDAEGYLQ 431 V+ M++ DGS GE+VVRAPWLTQGYL+ EAS +LW GG+LHTQDI LD G +Q Sbjct: 377 VNENMEEAAHDGSACGEIVVRAPWLTQGYLNNPEASVQLWSGGYLHTQDIATLDPSGSIQ 436 Query: 432 VTDRIKDVIKTGGEWVSSLQIEDIIARHPAVAETAVIGIQDGKWGERPVALVVLKKDAAA 491 +TDR+KDVIK+GGEW+SSL+IE +I+ +P V+E AVIGI D KWGERPVALVVL + Sbjct: 437 ITDRLKDVIKSGGEWISSLEIESLISLYPGVSEVAVIGISDEKWGERPVALVVL-GEGVV 495 Query: 492 VSEDDIREHVRAAAEAGAISRYGVPDRVRFVAELARTSVGKLNKRVMREQY 542 +SEDDI+ HV +E+G IS+Y VP VRF+ L +TSVGKLNK+ +R Q+ Sbjct: 496 LSEDDIKRHVLTFSESGRISKYAVPQIVRFIDSLEKTSVGKLNKKWLRAQF 546