BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0099.p (265 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774978.1| amino acid ABC transporter periplasmic prote... 536 e-150 ref|YP_003775682.1| amino acid ABC transporter/signal transducti... 411 e-113 ref|YP_004750929.1| ABC transporter substrate binding protein am... 360 1e-97 gb|ADU90705.1| putative amino acid transporter periplasmic ligan... 352 3e-95 ref|YP_001351726.1| ABC transporter substrate binding protein [J... 285 4e-75 ref|YP_004752057.1| twin-arginine translocation pathway signal [... 283 2e-74 ref|ZP_06685209.1| amino acid ABC superfamily ATP binding casset... 278 5e-73 gb|EGP46369.1| amino acid ABC transporter substrate-binding prot... 274 1e-71 ref|YP_003777627.1| amino acid ABC transporter/signal transducti... 273 2e-71 ref|ZP_08110588.1| extracellular solute-binding protein family 3... 271 7e-71 >ref|YP_003774978.1| amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ63070.1| ABC-type amino acid transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 265 Score = 536 bits (1381), Expect = e-150, Method: Compositional matrix adjust. Identities = 265/265 (100%), Positives = 265/265 (100%) Query: 1 MNFIKTAIAASLGLMAVAVHPAMADTLADIQKAGVVKIGVPQDFAPYGSVTSDLQLQGLD 60 MNFIKTAIAASLGLMAVAVHPAMADTLADIQKAGVVKIGVPQDFAPYGSVTSDLQLQGLD Sbjct: 1 MNFIKTAIAASLGLMAVAVHPAMADTLADIQKAGVVKIGVPQDFAPYGSVTSDLQLQGLD 60 Query: 61 IDVARLVAKGMGVKAELVPVPISSRMAFLQTHKIDLIISTLGKNAEREKVIDFSQGYAPY 120 IDVARLVAKGMGVKAELVPVPISSRMAFLQTHKIDLIISTLGKNAEREKVIDFSQGYAPY Sbjct: 61 IDVARLVAKGMGVKAELVPVPISSRMAFLQTHKIDLIISTLGKNAEREKVIDFSQGYAPY 120 Query: 121 NNSVFGVAAIKVAGPADLANQTVGVARSTFEDLMLTDSVPKSTVIKRYEDNNGLIAAYVS 180 NNSVFGVAAIKVAGPADLANQTVGVARSTFEDLMLTDSVPKSTVIKRYEDNNGLIAAYVS Sbjct: 121 NNSVFGVAAIKVAGPADLANQTVGVARSTFEDLMLTDSVPKSTVIKRYEDNNGLIAAYVS 180 Query: 181 GQVQLVGTGDFVAYALAEKTPANKPLLKYIINVSTCYVGMNKGEPALMAKVNEALTASKK 240 GQVQLVGTGDFVAYALAEKTPANKPLLKYIINVSTCYVGMNKGEPALMAKVNEALTASKK Sbjct: 181 GQVQLVGTGDFVAYALAEKTPANKPLLKYIINVSTCYVGMNKGEPALMAKVNEALTASKK 240 Query: 241 SGELNGIVKKWLNVPLPEKIATTYQ 265 SGELNGIVKKWLNVPLPEKIATTYQ Sbjct: 241 SGELNGIVKKWLNVPLPEKIATTYQ 265 >ref|YP_003775682.1| amino acid ABC transporter/signal transduction system periplasmic protein/domain-containing protein [Herbaspirillum seropedicae SmR1] gb|ADJ63774.1| ABC-type amino acid transport/signal transduction systems, periplasmic component/domain protein [Herbaspirillum seropedicae SmR1] Length = 267 Score = 411 bits (1056), Expect = e-113, Method: Compositional matrix adjust. Identities = 200/265 (75%), Positives = 230/265 (86%) Query: 1 MNFIKTAIAASLGLMAVAVHPAMADTLADIQKAGVVKIGVPQDFAPYGSVTSDLQLQGLD 60 M+ KT +A LGL A+ A AD LADIQK GVV+IGVPQDFAP+GSV +DLQLQGLD Sbjct: 3 MSPRKTMLAVVLGLAAMQGGLARADALADIQKNGVVRIGVPQDFAPFGSVNTDLQLQGLD 62 Query: 61 IDVARLVAKGMGVKAELVPVPISSRMAFLQTHKIDLIISTLGKNAEREKVIDFSQGYAPY 120 IDVARL+A+ MGVK +LVPV ++R+A+LQTHK DL+ISTLG+NAEREKVIDFSQ YAPY Sbjct: 63 IDVARLIAQKMGVKLQLVPVASANRIAYLQTHKADLVISTLGRNAEREKVIDFSQPYAPY 122 Query: 121 NNSVFGVAAIKVAGPADLANQTVGVARSTFEDLMLTDSVPKSTVIKRYEDNNGLIAAYVS 180 NNSVFGVA++KV+GPADLA++TVGVAR TF+DL LTD+ PKS IKRYEDNN +I+AYVS Sbjct: 123 NNSVFGVASVKVSGPADLADKTVGVARGTFQDLQLTDTAPKSATIKRYEDNNAMISAYVS 182 Query: 181 GQVQLVGTGDFVAYALAEKTPANKPLLKYIINVSTCYVGMNKGEPALMAKVNEALTASKK 240 GQVQLVGTGDFVAYALAEK P NKP+LKYII S C VG+NKGEPAL+AKVNEALTA+KK Sbjct: 183 GQVQLVGTGDFVAYALAEKAPNNKPVLKYIIQESACNVGLNKGEPALLAKVNEALTAAKK 242 Query: 241 SGELNGIVKKWLNVPLPEKIATTYQ 265 SGELNGIV+KWLNVPLP K+A T Q Sbjct: 243 SGELNGIVQKWLNVPLPAKMAATLQ 267 >ref|YP_004750929.1| ABC transporter substrate binding protein amino acid [Collimonas fungivorans Ter331] gb|AEK60106.1| ABC transporter, substrate binding protein amino acid [Collimonas fungivorans Ter331] Length = 276 Score = 360 bits (924), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 175/249 (70%), Positives = 208/249 (83%) Query: 17 VAVHPAMADTLADIQKAGVVKIGVPQDFAPYGSVTSDLQLQGLDIDVARLVAKGMGVKAE 76 +AV A AD LADIQK GV++I VPQDFAP+GSVTSD++LQGLDIDVA L+AK MG+K E Sbjct: 28 MAVQNAQADALADIQKRGVLRIAVPQDFAPFGSVTSDMKLQGLDIDVATLIAKNMGLKLE 87 Query: 77 LVPVPISSRMAFLQTHKIDLIISTLGKNAEREKVIDFSQGYAPYNNSVFGVAAIKVAGPA 136 LVPV ++R+A+LQT K DL ISTLGKNAEREKVI FSQ Y+PYNNSVFG A++KV+GPA Sbjct: 88 LVPVTSANRIAYLQTRKADLAISTLGKNAEREKVIAFSQPYSPYNNSVFGPASLKVSGPA 147 Query: 137 DLANQTVGVARSTFEDLMLTDSVPKSTVIKRYEDNNGLIAAYVSGQVQLVGTGDFVAYAL 196 DLA +T+GVAR TF+D LT++ P S VIKRYEDNNG+IAAY++GQVQLVGTGDFVA AL Sbjct: 148 DLAGKTIGVARGTFQDSQLTETAPPSAVIKRYEDNNGMIAAYLAGQVQLVGTGDFVAVAL 207 Query: 197 AEKTPANKPLLKYIINVSTCYVGMNKGEPALMAKVNEALTASKKSGELNGIVKKWLNVPL 256 A K +NKP +KYII S CYVG+ K EPALMAKVN AL+ +KKS ELN IV+KWLNVPL Sbjct: 208 AGKAASNKPQMKYIIQESACYVGLLKEEPALMAKVNAALSQAKKSNELNAIVQKWLNVPL 267 Query: 257 PEKIATTYQ 265 P K+A ++ Sbjct: 268 PGKMAVQFE 276 >gb|ADU90705.1| putative amino acid transporter periplasmic ligand binding protein [Collimonas sp. MPS11E8] Length = 268 Score = 352 bits (903), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 176/264 (66%), Positives = 212/264 (80%) Query: 1 MNFIKTAIAASLGLMAVAVHPAMADTLADIQKAGVVKIGVPQDFAPYGSVTSDLQLQGLD 60 M +KT +LGL +A A AD+L+DIQK GV++I VPQDFAP+GSVT++L+LQGLD Sbjct: 4 MRIVKTLFLLALGLPLIAAPAAHADSLSDIQKRGVLRIAVPQDFAPFGSVTAELKLQGLD 63 Query: 61 IDVARLVAKGMGVKAELVPVPISSRMAFLQTHKIDLIISTLGKNAEREKVIDFSQGYAPY 120 IDVA LVAK MG+K +LVPV ++R+A+LQT K DL+ISTLGKNAEREKVI FSQ Y+PY Sbjct: 64 IDVAGLVAKNMGLKLQLVPVTSANRIAYLQTAKADLVISTLGKNAEREKVIAFSQPYSPY 123 Query: 121 NNSVFGVAAIKVAGPADLANQTVGVARSTFEDLMLTDSVPKSTVIKRYEDNNGLIAAYVS 180 NNSVFG AIKV+GPADLA +T+GVAR TF+D L+++ P S IKRYEDNNG+I+AY++ Sbjct: 124 NNSVFGPTAIKVSGPADLAGKTIGVARGTFQDSQLSETAPPSATIKRYEDNNGMISAYLA 183 Query: 181 GQVQLVGTGDFVAYALAEKTPANKPLLKYIINVSTCYVGMNKGEPALMAKVNEALTASKK 240 GQVQLVGTGDFVA ALA KT NKP +KYII S CYVG+ K EPALMA VN ALT +KK Sbjct: 184 GQVQLVGTGDFVAVALAAKTTGNKPQMKYIIQESACYVGLLKEEPALMAAVNAALTKAKK 243 Query: 241 SGELNGIVKKWLNVPLPEKIATTY 264 ELN IV KWLNVPLP+K+A + Sbjct: 244 DHELNTIVMKWLNVPLPDKLARQF 267 >ref|YP_001351726.1| ABC transporter substrate binding protein [Janthinobacterium sp. Marseille] gb|ABR90168.1| ABC transporter substrate binding protein [Janthinobacterium sp. Marseille] Length = 259 Score = 285 bits (730), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 139/249 (55%), Positives = 182/249 (73%), Gaps = 3/249 (1%) Query: 12 LGLMAVAV---HPAMADTLADIQKAGVVKIGVPQDFAPYGSVTSDLQLQGLDIDVARLVA 68 +GLMA A+ + A AD L DIQK GV+++ VPQDF P+GSVT+D+ QGLDIDVA L+A Sbjct: 8 IGLMAGALLLTNVARADALDDIQKKGVLRVAVPQDFPPFGSVTTDMTPQGLDIDVATLIA 67 Query: 69 KGMGVKAELVPVPISSRMAFLQTHKIDLIISTLGKNAEREKVIDFSQGYAPYNNSVFGVA 128 K +GVK EL+PV ++R+ +LQT K+DL+IS++GKN EREKVIDFS YAP+ N VFG A Sbjct: 68 KKLGVKVELIPVTSANRIPYLQTKKVDLVISSMGKNPEREKVIDFSAAYAPFFNGVFGPA 127 Query: 129 AIKVAGPADLANQTVGVARSTFEDLMLTDSVPKSTVIKRYEDNNGLIAAYVSGQVQLVGT 188 KVA PADLA +T+GV R + EDL L+ P+S IKRYEDNNG I++++S QVQLV T Sbjct: 128 DQKVAAPADLAGKTIGVTRGSVEDLELSKIAPESATIKRYEDNNGTISSFLSNQVQLVAT 187 Query: 189 GDFVAYALAEKTPANKPLLKYIINVSTCYVGMNKGEPALMAKVNEALTASKKSGELNGIV 248 G+ +A A+ K P KP K++I S C +G+NKGE L+ KVN + +KK G LN + Sbjct: 188 GNVIAAAIIAKNPPKKPETKFLIKNSPCSIGLNKGEEKLLEKVNAIIAQAKKDGSLNTLT 247 Query: 249 KKWLNVPLP 257 +KWL +PLP Sbjct: 248 EKWLGLPLP 256 >ref|YP_004752057.1| twin-arginine translocation pathway signal [Collimonas fungivorans Ter331] gb|AEK61234.1| Twin-arginine translocation pathway signal [Collimonas fungivorans Ter331] Length = 259 Score = 283 bits (724), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 142/236 (60%), Positives = 172/236 (72%) Query: 22 AMADTLADIQKAGVVKIGVPQDFAPYGSVTSDLQLQGLDIDVARLVAKGMGVKAELVPVP 81 A AD L DI K+GV+K+ VPQDF P+GSVTSDL+ QGLDIDVA L+AK MGVK EL+PV Sbjct: 21 ARADALEDIVKSGVLKVAVPQDFPPFGSVTSDLKPQGLDIDVATLIAKKMGVKIELIPVT 80 Query: 82 ISSRMAFLQTHKIDLIISTLGKNAEREKVIDFSQGYAPYNNSVFGVAAIKVAGPADLANQ 141 ++R+ +LQT K+DLIIS+LGKN EREKVI FS YAP+ N VFG A KV+ ADLA + Sbjct: 81 SANRVPYLQTKKVDLIISSLGKNPEREKVIAFSDAYAPFYNGVFGGADQKVSSAADLAGK 140 Query: 142 TVGVARSTFEDLMLTDSVPKSTVIKRYEDNNGLIAAYVSGQVQLVGTGDFVAYALAEKTP 201 TVGV R EDL LT P S IKRYEDNNG I+A++SGQVQLV TG+ VA A+ K P Sbjct: 141 TVGVTRGAVEDLELTKIAPASATIKRYEDNNGTISAFLSGQVQLVATGNVVAAAIIAKNP 200 Query: 202 ANKPLLKYIINVSTCYVGMNKGEPALMAKVNEALTASKKSGELNGIVKKWLNVPLP 257 KP K++I S C +G++K EP L+ KVN L +KK GELN + KWL +PLP Sbjct: 201 PKKPETKFLIKNSPCSIGLSKDEPKLLEKVNAILAQTKKDGELNALSVKWLGLPLP 256 >ref|ZP_06685209.1| amino acid ABC superfamily ATP binding cassette transporter, binding protein [Achromobacter piechaudii ATCC 43553] gb|EFF77826.1| amino acid ABC superfamily ATP binding cassette transporter, binding protein [Achromobacter piechaudii ATCC 43553] Length = 260 Score = 278 bits (712), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 141/258 (54%), Positives = 179/258 (69%), Gaps = 4/258 (1%) Query: 3 FIKTAIAASLGLMAVAVHPAMADTLADIQKAGVVKIGVPQDFAPYGSVTSDLQLQGLDID 62 + AASL L A H ADTL DI KAGV+KI VPQDF P+GSV SD++ G DID Sbjct: 7 LLSLCTAASL-LAAPLTH---ADTLDDIVKAGVIKIAVPQDFPPFGSVGSDMKPLGYDID 62 Query: 63 VARLVAKGMGVKAELVPVPISSRMAFLQTHKIDLIISTLGKNAEREKVIDFSQGYAPYNN 122 A L+AK +GVK ELVPV ++R+ +LQT K+DL+IS+LGKNAEREK IDFS YAP+ N Sbjct: 63 TAALIAKQLGVKLELVPVTSANRVPYLQTRKVDLVISSLGKNAEREKAIDFSDAYAPFFN 122 Query: 123 SVFGVAAIKVAGPADLANQTVGVARSTFEDLMLTDSVPKSTVIKRYEDNNGLIAAYVSGQ 182 VFG A +KV+ ADLA +T+GV R ED+ L+ P S +KRYEDNNG I A++SGQ Sbjct: 123 GVFGPADLKVSSAADLAGKTIGVTRGAVEDIELSKIAPASATLKRYEDNNGTITAFLSGQ 182 Query: 183 VQLVGTGDFVAYALAEKTPANKPLLKYIINVSTCYVGMNKGEPALMAKVNEALTASKKSG 242 V ++ TG+ VA A+ + P KP K++I S CY+GMNK EP L AKVN+ L A+K G Sbjct: 183 VPMIATGNVVAAAILARNPPKKPETKFLIKNSPCYIGMNKDEPKLRAKVNDILAAAKHDG 242 Query: 243 ELNGIVKKWLNVPLPEKI 260 L+ I +KWL PLP+ + Sbjct: 243 SLSAISQKWLGAPLPKDL 260 >gb|EGP46369.1| amino acid ABC transporter substrate-binding protein [Achromobacter xylosoxidans AXX-A] Length = 260 Score = 274 bits (701), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 134/237 (56%), Positives = 168/237 (70%) Query: 24 ADTLADIQKAGVVKIGVPQDFAPYGSVTSDLQLQGLDIDVARLVAKGMGVKAELVPVPIS 83 ADTL DI KAG +K+ VPQDF P+GSV SD++ G DID A L+AK +GVK ELVPV + Sbjct: 24 ADTLDDIVKAGTLKVAVPQDFPPFGSVGSDMKPLGYDIDTAALIAKQLGVKLELVPVTSA 83 Query: 84 SRMAFLQTHKIDLIISTLGKNAEREKVIDFSQGYAPYNNSVFGVAAIKVAGPADLANQTV 143 +R+ +LQT K+DL+IS+LGKNAEREK IDFS YAP+ N VFG A +KVA ADLA +T+ Sbjct: 84 NRVPYLQTRKVDLVISSLGKNAEREKAIDFSDAYAPFFNGVFGPADLKVASAADLAGKTI 143 Query: 144 GVARSTFEDLMLTDSVPKSTVIKRYEDNNGLIAAYVSGQVQLVGTGDFVAYALAEKTPAN 203 GV R ED+ LT P + +KRYEDNNG I A++SGQV L+ TG+ VA A+ + P Sbjct: 144 GVTRGAVEDIELTKIAPPTATLKRYEDNNGTITAFLSGQVPLIATGNVVAAAILARNPPK 203 Query: 204 KPLLKYIINVSTCYVGMNKGEPALMAKVNEALTASKKSGELNGIVKKWLNVPLPEKI 260 KP K++I S CY+GMNK EP L AKVNE L +K+ G L I KKWL LP+ + Sbjct: 204 KPETKFLIKDSPCYIGMNKDEPKLRAKVNEILANAKRDGSLAAISKKWLGADLPKDL 260 >ref|YP_003777627.1| amino acid ABC transporter/signal transduction system periplasmic protein/domain-containing protein [Herbaspirillum seropedicae SmR1] gb|ADJ65719.1| ABC-type amino acid transport/signal transduction systems, periplasmic component/domain protein [Herbaspirillum seropedicae SmR1] Length = 260 Score = 273 bits (698), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 134/257 (52%), Positives = 175/257 (68%) Query: 1 MNFIKTAIAASLGLMAVAVHPAMADTLADIQKAGVVKIGVPQDFAPYGSVTSDLQLQGLD 60 M K + G M + A AD L DIQK G +++ VP DF P+GSV +DL+ QGLD Sbjct: 1 MKLTKLLLGLMAGAMMFSASVARADALDDIQKHGTLRVAVPADFPPFGSVDADLKPQGLD 60 Query: 61 IDVARLVAKGMGVKAELVPVPISSRMAFLQTHKIDLIISTLGKNAEREKVIDFSQGYAPY 120 IDVA L+AK +GVK EL+PV ++R+ +L T K+DL+IS++GKNAEREKVIDFS YAP+ Sbjct: 61 IDVATLIAKKLGVKVELIPVSSANRIPYLTTKKVDLVISSMGKNAEREKVIDFSAAYAPF 120 Query: 121 NNSVFGVAAIKVAGPADLANQTVGVARSTFEDLMLTDSVPKSTVIKRYEDNNGLIAAYVS 180 N VFG A + V ADLA +T+ V R + EDL LT VP S +KRYEDNN I++++S Sbjct: 121 FNGVFGPADLSVKSAADLAGKTIAVTRGSVEDLELTKIVPASATVKRYEDNNSTISSFLS 180 Query: 181 GQVQLVGTGDFVAYALAEKTPANKPLLKYIINVSTCYVGMNKGEPALMAKVNEALTASKK 240 GQVQLV TG+ VA A+ + P KP K++I S C++G+NKGE L KV+ L SKK Sbjct: 181 GQVQLVATGNVVAAAIIARNPPKKPETKFLIKDSPCFIGLNKGEKKLQDKVDAILAESKK 240 Query: 241 SGELNGIVKKWLNVPLP 257 G L+ I +KWL +PLP Sbjct: 241 DGSLSAISQKWLGMPLP 257 >ref|ZP_08110588.1| extracellular solute-binding protein family 3 [Desulfovibrio sp. ND132] gb|EGB14473.1| extracellular solute-binding protein family 3 [Desulfovibrio desulfuricans ND132] Length = 265 Score = 271 bits (693), Expect = 7e-71, Method: Compositional matrix adjust. Identities = 140/259 (54%), Positives = 183/259 (70%), Gaps = 2/259 (0%) Query: 3 FIKTAIAASLGLMAVAVHPAMA-DTLADIQKAGVVKIGVPQDFAPYGSVTSDLQLQGLDI 61 F K +A L L+ +A PA+A DTL+ I+ AGV+K+ VPQDF P+GSV D+Q G DI Sbjct: 8 FCKMVLACMLALV-LACGPALASDTLSQIKDAGVLKVAVPQDFPPFGSVGPDMQPLGYDI 66 Query: 62 DVARLVAKGMGVKAELVPVPISSRMAFLQTHKIDLIISTLGKNAEREKVIDFSQGYAPYN 121 D+A L+A +GVK +LVPV ++R+ +L T K+DL+IS+LGKN +R VIDFS YAP+ Sbjct: 67 DMASLIAAKLGVKVKLVPVTSTNRIPYLTTGKVDLVISSLGKNPKRAAVIDFSDAYAPFF 126 Query: 122 NSVFGVAAIKVAGPADLANQTVGVARSTFEDLMLTDSVPKSTVIKRYEDNNGLIAAYVSG 181 N VFG + KVAGPADLA++TV V R + EDL LT P+STVIKR+EDN+ IAAY +G Sbjct: 127 NGVFGTSDEKVAGPADLADKTVAVTRGSIEDLELTKVAPESTVIKRFEDNSSTIAAYQTG 186 Query: 182 QVQLVGTGDFVAYALAEKTPANKPLLKYIINVSTCYVGMNKGEPALMAKVNEALTASKKS 241 QV LV TG+ VA ++ EK PA K++I S CYVG+ K +PALMAKVN + +KK Sbjct: 187 QVDLVATGNVVAASINEKKPAKMLETKFMIKNSPCYVGIAKDQPALMAKVNAIIAGAKKD 246 Query: 242 GELNGIVKKWLNVPLPEKI 260 G L I +KWL+ PLPE + Sbjct: 247 GSLGAISEKWLHNPLPENL 265