BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0090.p (144 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774972.1| transcription regulator protein [Herbaspiril... 287 3e-76 ref|YP_001416208.1| MarR family transcriptional regulator [Xanth... 147 4e-34 ref|YP_001237468.1| MarR family transcriptional regulator [Brady... 132 1e-29 ref|YP_001208149.1| MarR family transcriptional regulator [Brady... 131 3e-29 ref|NP_768971.1| transcriptional regulator [Bradyrhizobium japon... 125 2e-27 ref|ZP_02189133.1| transcriptional regulator, MarR family protei... 112 2e-23 ref|YP_660702.1| MarR family transcriptional regulator [Pseudoal... 108 2e-22 ref|YP_001475764.1| transcriptional regulatory protein [Shewanel... 107 7e-22 ref|ZP_08733007.1| transcriptional regulator [Vibrio nigripulchr... 103 1e-20 ref|YP_004304472.1| transcription regulator protein [Polymorphum... 102 1e-20 >ref|YP_003774972.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ63064.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 156 Score = 287 bits (735), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 143/144 (99%), Positives = 144/144 (100%) Query: 1 MKLQDFFPYQLAQLAEAVSRSVATVYADRFGLTRDEWRILAALAEQGQMQGSDLGPHASL 60 MKLQDFFPYQLAQLAEAVSRSVATVYADRFGLTRDEWRILAALAEQGQMQGSDLGPHASL Sbjct: 13 MKLQDFFPYQLAQLAEAVSRSVATVYADRFGLTRDEWRILAALAEQGQMQGSDLGPHASL 72 Query: 61 DKMQVSRALARMEEAGLIVREPSPHDARARIVKPTAQARKLYRKIVPMVEQRESFLLEAL 120 DKMQVSRALARMEEAGLIVREPSPHDARARIVKPTAQARKLYRKIVPMVEQRE+FLLEAL Sbjct: 73 DKMQVSRALARMEEAGLIVREPSPHDARARIVKPTAQARKLYRKIVPMVEQREAFLLEAL 132 Query: 121 SKTEREALMSAMQKVRERALQDLP 144 SKTEREALMSAMQKVRERALQDLP Sbjct: 133 SKTEREALMSAMQKVRERALQDLP 156 >ref|YP_001416208.1| MarR family transcriptional regulator [Xanthobacter autotrophicus Py2] gb|ABS66551.1| transcriptional regulator, MarR family [Xanthobacter autotrophicus Py2] Length = 154 Score = 147 bits (372), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 75/137 (54%), Positives = 94/137 (68%) Query: 3 LQDFFPYQLAQLAEAVSRSVATVYADRFGLTRDEWRILAALAEQGQMQGSDLGPHASLDK 62 L DFFPY+LA LAE VS++VA +Y DRF +TR EWR+LAAL M D+G +++LDK Sbjct: 11 LADFFPYRLAVLAEHVSQAVAQLYGDRFQITRAEWRVLAALGANNGMAAKDIGAYSTLDK 70 Query: 63 MQVSRALARMEEAGLIVREPSPHDARARIVKPTAQARKLYRKIVPMVEQRESFLLEALSK 122 MQVSRA+AR+EEAGLI R D RA+I+ T R L++KIVP+ + RE +LLE L Sbjct: 71 MQVSRAVARLEEAGLITRATDDADRRAKILTLTGSGRALFQKIVPLAQAREDYLLEDLDP 130 Query: 123 TEREALMSAMQKVRERA 139 ER L AM KV RA Sbjct: 131 KERAVLDKAMAKVLARA 147 >ref|YP_001237468.1| MarR family transcriptional regulator [Bradyrhizobium sp. BTAi1] gb|ABQ33562.1| transcriptional regulator, MarR family [Bradyrhizobium sp. BTAi1] Length = 168 Score = 132 bits (333), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 74/145 (51%), Positives = 94/145 (64%), Gaps = 3/145 (2%) Query: 1 MKLQDFFPYQLAQLAEAVSRSVATVYADRFGLTRDEWRILAALAEQGQMQGSDLGPHASL 60 +KLQ++FPY+LA+LAE VS +VA VYADRF L+R EWRILAAL EQ ++ +G +L Sbjct: 18 LKLQEYFPYRLARLAEQVSLAVAEVYADRFALSRQEWRILAALGEQPRLPTKQIGRLTTL 77 Query: 61 DKMQVSRALARMEEAGLIVREPSPHDARARIVKPTAQARKLYRKIVPMVEQRESFLLEAL 120 DKM VSRA+ +E G++ R P D R RIV TA R LYR+IVP RES LL L Sbjct: 78 DKMNVSRAMQSLEARGIVSRSRDPEDGRERIVTLTAAGRGLYRRIVPYALARESDLLGVL 137 Query: 121 SKTEREALMSAMQKV---RERALQD 142 S E L + + K+ ERA+ D Sbjct: 138 SAAELATLDTVIDKLLAAAERAVDD 162 >ref|YP_001208149.1| MarR family transcriptional regulator [Bradyrhizobium sp. ORS 278] emb|CAL79934.1| putative transcriptional regulatory protein, MarR family [Bradyrhizobium sp. ORS 278] Length = 164 Score = 131 bits (330), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 69/135 (51%), Positives = 91/135 (67%) Query: 1 MKLQDFFPYQLAQLAEAVSRSVATVYADRFGLTRDEWRILAALAEQGQMQGSDLGPHASL 60 ++LQ +FPY+LA+LAE VS +VA VYADRF L+R EWRILAAL EQ ++ +G +L Sbjct: 22 LRLQRYFPYRLARLAEQVSLAVAEVYADRFALSRQEWRILAALGEQPRLPTKQIGRLTTL 81 Query: 61 DKMQVSRALARMEEAGLIVREPSPHDARARIVKPTAQARKLYRKIVPMVEQRESFLLEAL 120 DKM VSRA+ +E G++ R P D R RIV TA R LYRKIVP RE+ LL+AL Sbjct: 82 DKMNVSRAMQSLEARGIVSRSRDPEDGRERIVTLTAAGRALYRKIVPHALAREADLLDAL 141 Query: 121 SKTEREALMSAMQKV 135 ++ E L + + K+ Sbjct: 142 TREEVATLNAVIDKL 156 >ref|NP_768971.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] dbj|BAC47596.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 162 Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 65/135 (48%), Positives = 91/135 (67%) Query: 1 MKLQDFFPYQLAQLAEAVSRSVATVYADRFGLTRDEWRILAALAEQGQMQGSDLGPHASL 60 + LQ +FPY+LA+LAE VS +VA VY++RF LTR EWR+LA L + Q+ ++GP +L Sbjct: 23 LDLQQYFPYRLARLAEQVSLAVAEVYSERFALTRQEWRVLAILGARTQIATKEIGPLTTL 82 Query: 61 DKMQVSRALARMEEAGLIVREPSPHDARARIVKPTAQARKLYRKIVPMVEQRESFLLEAL 120 DKMQVSRA+ +E G++ R+ + D R IV T+ R L+RKIVP +RE+ LL L Sbjct: 83 DKMQVSRAVQGLETRGIVSRKHASDDRRELIVSLTSAGRALFRKIVPFALERETRLLAVL 142 Query: 121 SKTEREALMSAMQKV 135 + E E L AM+K+ Sbjct: 143 TSEEVEVLDRAMRKL 157 >ref|ZP_02189133.1| transcriptional regulator, MarR family protein [alpha proteobacterium BAL199] gb|EDP64092.1| transcriptional regulator, MarR family protein [alpha proteobacterium BAL199] Length = 170 Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 55/137 (40%), Positives = 85/137 (62%) Query: 3 LQDFFPYQLAQLAEAVSRSVATVYADRFGLTRDEWRILAALAEQGQMQGSDLGPHASLDK 62 L F PY+L+ LA VSR++A +YADRFG+T EWR+LA L + G + +++ ++DK Sbjct: 20 LDRFLPYRLSVLANTVSRAIARLYADRFGITIPEWRVLAILGDSGPVTSAEIRDRTAMDK 79 Query: 63 MQVSRALARMEEAGLIVREPSPHDARARIVKPTAQARKLYRKIVPMVEQRESFLLEALSK 122 +QVSRA+ R+ A L+ R P D R + T + +YR+IVP+ RE+ LL+ S Sbjct: 80 VQVSRAIQRLVSARLVSRRTDPADRRRATIAMTGKGAGVYREIVPLALSREAILLDGFSD 139 Query: 123 TEREALMSAMQKVRERA 139 ER L + + ++ +RA Sbjct: 140 DERRVLDALLNRLGDRA 156 >ref|YP_660702.1| MarR family transcriptional regulator [Pseudoalteromonas atlantica T6c] gb|ABG39648.1| transcriptional regulator, MarR family [Pseudoalteromonas atlantica T6c] Length = 151 Score = 108 bits (270), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 52/128 (40%), Positives = 84/128 (65%), Gaps = 1/128 (0%) Query: 1 MKLQDFFPYQLAQLAEAVSRSVATVYADRFGLTRDEWRILAALAEQGQMQGSDLGPHASL 60 + L FFPYQL+ LA+ V+ +A +Y ++ GLTR +WR+LAA+ G++ D+ L Sbjct: 9 LDLNQFFPYQLSILAQQVTEFIAKIY-EKHGLTRTDWRVLAAVGFHGEISARDICKFTRL 67 Query: 61 DKMQVSRALARMEEAGLIVREPSPHDARARIVKPTAQARKLYRKIVPMVEQRESFLLEAL 120 +KM VSRA+A++ AGL+++ P D R ++ T++ K+++ I+P+V+ +E LLE L Sbjct: 68 EKMPVSRAIAKLIRAGLLLQHPGSLDRRTNVLNLTSEGAKVHQHIIPLVKAQEERLLEGL 127 Query: 121 SKTEREAL 128 S ERE L Sbjct: 128 STQEREQL 135 >ref|YP_001475764.1| transcriptional regulatory protein [Shewanella sediminis HAW-EB3] gb|ABV38636.1| transcriptional regulatory protein [Shewanella sediminis HAW-EB3] Length = 162 Score = 107 bits (266), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 56/135 (41%), Positives = 78/135 (57%) Query: 1 MKLQDFFPYQLAQLAEAVSRSVATVYADRFGLTRDEWRILAALAEQGQMQGSDLGPHASL 60 + + FFPYQL QL +VS ++A +Y F LTR EWRILA L + +G +L Sbjct: 16 LDMDSFFPYQLTQLQSSVSDNIAEIYTGHFELTRHEWRILAVLGTGKALSAKQIGLMINL 75 Query: 61 DKMQVSRALARMEEAGLIVREPSPHDARARIVKPTAQARKLYRKIVPMVEQRESFLLEAL 120 +KMQ SRALARM LI + D R+ ++K T + +++R++ PMV RE LL L Sbjct: 76 EKMQTSRALARMINKALIAKVEDRSDKRSSLLKLTPEGLRVHRELAPMVLAREQALLSVL 135 Query: 121 SKTEREALMSAMQKV 135 S+ E E L M K+ Sbjct: 136 SEDEHEQLKQIMDKL 150 >ref|ZP_08733007.1| transcriptional regulator [Vibrio nigripulchritudo ATCC 27043] gb|EGU59371.1| transcriptional regulator [Vibrio nigripulchritudo ATCC 27043] Length = 155 Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 53/137 (38%), Positives = 84/137 (61%) Query: 1 MKLQDFFPYQLAQLAEAVSRSVATVYADRFGLTRDEWRILAALAEQGQMQGSDLGPHASL 60 L +F PY+L + AE V+ S+A +Y FG+TR EWRI+A L + + DL +L Sbjct: 6 FSLDEFLPYKLVRTAEQVADSLAELYQKEFGITRPEWRIIANLGAREDVIARDLSDVTNL 65 Query: 61 DKMQVSRALARMEEAGLIVREPSPHDARARIVKPTAQARKLYRKIVPMVEQRESFLLEAL 120 DK++VSR LAR+EE LI RE + +D RA ++ T + + LY +I+P Q ES +L+ L Sbjct: 66 DKVKVSRTLARLEEKELITREKTENDQRATHIQLTEKGQALYERIIPRALQWESEILDGL 125 Query: 121 SKTEREALMSAMQKVRE 137 + ++ L A+ +++ Sbjct: 126 TGSQYRDLFRALDALKQ 142 >ref|YP_004304472.1| transcription regulator protein [Polymorphum gilvum SL003B-26A1] gb|ADZ71168.1| Putative transcription regulator protein [Polymorphum gilvum SL003B-26A1] Length = 155 Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 48/120 (40%), Positives = 75/120 (62%) Query: 1 MKLQDFFPYQLAQLAEAVSRSVATVYADRFGLTRDEWRILAALAEQGQMQGSDLGPHASL 60 ++L+ F PY+L+ LAE VSRS++ +YADRFG+ EWR++A + + G + D+G HA + Sbjct: 12 LRLEQFLPYRLSLLAEIVSRSLSRIYADRFGIAIPEWRVVATIGQYGPITAKDVGTHAHM 71 Query: 61 DKMQVSRALARMEEAGLIVREPSPHDARARIVKPTAQARKLYRKIVPMVEQRESFLLEAL 120 K +VSRA+A +E+ G + R P+ D R I+ T + +YR++VP LL L Sbjct: 72 HKTKVSRAVAALEKLGYVARTPNERDMRESILTLTPSGQAMYRELVPEARAFSDALLRTL 131