BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0085.p (213 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774966.1| transmembrane protein [Herbaspirillum serope... 434 e-120 ref|YP_004753999.1| hypothetical protein CFU_3352 [Collimonas fu... 328 3e-88 ref|YP_001352571.1| hypothetical protein mma_0881 [Janthinobacte... 321 5e-86 ref|YP_410717.1| hypothetical protein Nmul_A0016 [Nitrosospira m... 314 6e-84 ref|YP_004293532.1| hypothetical protein NAL212_0425 [Nitrosomon... 312 2e-83 ref|YP_004693412.1| hypothetical protein Nit79A3_0106 [Nitrosomo... 310 1e-82 ref|YP_747713.1| hypothetical protein Neut_1503 [Nitrosomonas eu... 301 3e-80 ref|NP_841221.1| hypothetical protein NE1164 [Nitrosomonas europ... 298 3e-79 ref|YP_004618703.1| membrane protein [Ramlibacter tataouinensis ... 272 3e-71 ref|YP_001792089.1| hypothetical protein Lcho_3064 [Leptothrix c... 271 6e-71 >ref|YP_003774966.1| transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ63058.1| transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 213 Score = 434 bits (1116), Expect = e-120, Method: Compositional matrix adjust. Identities = 213/213 (100%), Positives = 213/213 (100%) Query: 1 MKTPSPQAPKPPRKIGILPNLIFMSRWLQLPLYLGLILAQCVYVYHFWVELVDLIGAAMG 60 MKTPSPQAPKPPRKIGILPNLIFMSRWLQLPLYLGLILAQCVYVYHFWVELVDLIGAAMG Sbjct: 1 MKTPSPQAPKPPRKIGILPNLIFMSRWLQLPLYLGLILAQCVYVYHFWVELVDLIGAAMG 60 Query: 61 NASSLDHILDAVAIPGAIRPEKLNEQTIMLVVLALIDVVMISNLLIMVIVGGYETFVSRM 120 NASSLDHILDAVAIPGAIRPEKLNEQTIMLVVLALIDVVMISNLLIMVIVGGYETFVSRM Sbjct: 61 NASSLDHILDAVAIPGAIRPEKLNEQTIMLVVLALIDVVMISNLLIMVIVGGYETFVSRM 120 Query: 121 NLEGHPDQPEWLSHVNASVLKVKLATAIIGISSIHLLKTFINANLYDAKTLIAQTGIHIA 180 NLEGHPDQPEWLSHVNASVLKVKLATAIIGISSIHLLKTFINANLYDAKTLIAQTGIHIA Sbjct: 121 NLEGHPDQPEWLSHVNASVLKVKLATAIIGISSIHLLKTFINANLYDAKTLIAQTGIHIA 180 Query: 181 FLFSAMAIAYCDRLMIHPGAHGDEPSDKPSEKH 213 FLFSAMAIAYCDRLMIHPGAHGDEPSDKPSEKH Sbjct: 181 FLFSAMAIAYCDRLMIHPGAHGDEPSDKPSEKH 213 >ref|YP_004753999.1| hypothetical protein CFU_3352 [Collimonas fungivorans Ter331] gb|AEK63176.1| hypothetical protein CFU_3352 [Collimonas fungivorans Ter331] Length = 204 Score = 328 bits (841), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 161/195 (82%), Positives = 171/195 (87%), Gaps = 2/195 (1%) Query: 1 MKTPSPQAPKPPRKIGILPNLIFMSRWLQLPLYLGLILAQCVYVYHFWVELVDLIGAAMG 60 M P APK + IG+LPNLIFMSRWLQLPLYLGLILAQCVYV+HFWVEL DLIGA G Sbjct: 1 MSNMQPSAPK--KAIGVLPNLIFMSRWLQLPLYLGLILAQCVYVFHFWVELTDLIGAVFG 58 Query: 61 NASSLDHILDAVAIPGAIRPEKLNEQTIMLVVLALIDVVMISNLLIMVIVGGYETFVSRM 120 NA+SL+HILD V I GA+RP KL E TIMLVVL LIDVVMISNLLIMVIVGGYETFVSRM Sbjct: 59 NAASLNHILDVVTIDGAVRPTKLTEATIMLVVLGLIDVVMISNLLIMVIVGGYETFVSRM 118 Query: 121 NLEGHPDQPEWLSHVNASVLKVKLATAIIGISSIHLLKTFINANLYDAKTLIAQTGIHIA 180 NLE HPDQPEWLSHVNASVLKVKLA AIIGISSIHLLKTFINAN YD KTL+AQTGIHI Sbjct: 119 NLESHPDQPEWLSHVNASVLKVKLAMAIIGISSIHLLKTFINANAYDVKTLLAQTGIHIT 178 Query: 181 FLFSAMAIAYCDRLM 195 FL SA+AIA+CDR+M Sbjct: 179 FLLSALAIAWCDRIM 193 >ref|YP_001352571.1| hypothetical protein mma_0881 [Janthinobacterium sp. Marseille] gb|ABR90171.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 220 Score = 321 bits (822), Expect = 5e-86, Method: Compositional matrix adjust. Identities = 162/206 (78%), Positives = 172/206 (83%), Gaps = 11/206 (5%) Query: 1 MKTP------SPQAPKPPRKIGILPNLIFMSRWLQLPLYLGLILAQCVYVYHFWVELVDL 54 MKTP S + P PP L IFM+RWLQLPLYLGLILAQCVYV+HFWVEL DL Sbjct: 15 MKTPVSTNELSTKQPIPP-----LARFIFMTRWLQLPLYLGLILAQCVYVFHFWVELSDL 69 Query: 55 IGAAMGNASSLDHILDAVAIPGAIRPEKLNEQTIMLVVLALIDVVMISNLLIMVIVGGYE 114 IGA +GN SL HILDAVAIPGA++P KLNE TIMLVVL LIDVVMISNLLIMVI+GGYE Sbjct: 70 IGAVLGNPDSLQHILDAVAIPGAVKPSKLNETTIMLVVLGLIDVVMISNLLIMVIIGGYE 129 Query: 115 TFVSRMNLEGHPDQPEWLSHVNASVLKVKLATAIIGISSIHLLKTFINANLYDAKTLIAQ 174 TFVSRMNLE HPDQPEWLSHVNASVLKVKLATAIIGISSIHLLKTFINA+ YD KTL+AQ Sbjct: 130 TFVSRMNLESHPDQPEWLSHVNASVLKVKLATAIIGISSIHLLKTFINASAYDTKTLLAQ 189 Query: 175 TGIHIAFLFSAMAIAYCDRLMIHPGA 200 TGIHI FLFSAMAIAY DR+M A Sbjct: 190 TGIHIVFLFSAMAIAYSDRIMAQTAA 215 >ref|YP_410717.1| hypothetical protein Nmul_A0016 [Nitrosospira multiformis ATCC 25196] gb|ABB73325.1| Uncharacterized protein UPF0114 [Nitrosospira multiformis ATCC 25196] Length = 215 Score = 314 bits (804), Expect = 6e-84, Method: Compositional matrix adjust. Identities = 155/202 (76%), Positives = 169/202 (83%) Query: 3 TPSPQAPKPPRKIGILPNLIFMSRWLQLPLYLGLILAQCVYVYHFWVELVDLIGAAMGNA 62 TP P RKI L IF +RWLQLPLYLGLILAQCVYVYHFWVEL+DLIGA MGN Sbjct: 13 TPLPVYSGRSRKIQPLAYFIFTTRWLQLPLYLGLILAQCVYVYHFWVELLDLIGAVMGNK 72 Query: 63 SSLDHILDAVAIPGAIRPEKLNEQTIMLVVLALIDVVMISNLLIMVIVGGYETFVSRMNL 122 +L+H LDAV+I GA P+K+ E TIMLVVL LIDVVMISNLLIMVI+GGYETFVSRMNL Sbjct: 73 EALEHTLDAVSIEGAAPPKKIGETTIMLVVLGLIDVVMISNLLIMVIIGGYETFVSRMNL 132 Query: 123 EGHPDQPEWLSHVNASVLKVKLATAIIGISSIHLLKTFINANLYDAKTLIAQTGIHIAFL 182 EGHPDQPEWLSHVNA+VLKVKL+TAIIGISSIHLLKTFINAN YD KT++AQTGIHI FL Sbjct: 133 EGHPDQPEWLSHVNATVLKVKLSTAIIGISSIHLLKTFINANAYDEKTILAQTGIHIVFL 192 Query: 183 FSAMAIAYCDRLMIHPGAHGDE 204 SA+AIAY DRLM PG H + Sbjct: 193 LSAIAIAYSDRLMSRPGGHESD 214 >ref|YP_004293532.1| hypothetical protein NAL212_0425 [Nitrosomonas sp. AL212] gb|ADZ25370.1| Uncharacterized protein family UPF0114 [Nitrosomonas sp. AL212] Length = 206 Score = 312 bits (799), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 150/182 (82%), Positives = 162/182 (89%) Query: 18 LPNLIFMSRWLQLPLYLGLILAQCVYVYHFWVELVDLIGAAMGNASSLDHILDAVAIPGA 77 + +F++RWLQLPLYLGL+LAQC+YV+HFWVELVDLIGA MGN S+L HILD V I GA Sbjct: 19 IAQFLFLTRWLQLPLYLGLVLAQCIYVFHFWVELVDLIGAVMGNQSALQHILDTVTIKGA 78 Query: 78 IRPEKLNEQTIMLVVLALIDVVMISNLLIMVIVGGYETFVSRMNLEGHPDQPEWLSHVNA 137 RPEKL E IMLVVL LIDVVMISNLLIMVI+GGYETFVSRMNLEGHPDQPEWLSHVNA Sbjct: 79 DRPEKLTETAIMLVVLGLIDVVMISNLLIMVIIGGYETFVSRMNLEGHPDQPEWLSHVNA 138 Query: 138 SVLKVKLATAIIGISSIHLLKTFINANLYDAKTLIAQTGIHIAFLFSAMAIAYCDRLMIH 197 SVLKVKLATAIIGISSIHLLKTFINA+ YD KTLIAQTGIH+AFL SAMAIAYCDRL+ Sbjct: 139 SVLKVKLATAIIGISSIHLLKTFINASAYDEKTLIAQTGIHMAFLLSAMAIAYCDRLISQ 198 Query: 198 PG 199 G Sbjct: 199 TG 200 >ref|YP_004693412.1| hypothetical protein Nit79A3_0106 [Nitrosomonas sp. Is79A3] gb|AEJ00013.1| UPF0114 protein yqhA [Nitrosomonas sp. Is79A3] Length = 208 Score = 310 bits (794), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 149/204 (73%), Positives = 168/204 (82%) Query: 1 MKTPSPQAPKPPRKIGILPNLIFMSRWLQLPLYLGLILAQCVYVYHFWVELVDLIGAAMG 60 M+T P R+I + + +F++RWLQLPLYLGL+LAQCVYV+HFWVEL DLIGA +G Sbjct: 4 METKDSSGNIPLRRIHPIAHFLFLTRWLQLPLYLGLVLAQCVYVFHFWVELSDLIGAVLG 63 Query: 61 NASSLDHILDAVAIPGAIRPEKLNEQTIMLVVLALIDVVMISNLLIMVIVGGYETFVSRM 120 N ++L HILD V I GA RP KL E IMLVVL LIDVVMISNLLIMVI+GGYETFVSRM Sbjct: 64 NQNALQHILDTVTIKGAERPTKLTETAIMLVVLGLIDVVMISNLLIMVIIGGYETFVSRM 123 Query: 121 NLEGHPDQPEWLSHVNASVLKVKLATAIIGISSIHLLKTFINANLYDAKTLIAQTGIHIA 180 NLEGHPDQPEWLSHVNASVLKVKLATAIIGISSIHLLKTFINA+ YD KTL+AQTGIH+A Sbjct: 124 NLEGHPDQPEWLSHVNASVLKVKLATAIIGISSIHLLKTFINASAYDEKTLLAQTGIHMA 183 Query: 181 FLFSAMAIAYCDRLMIHPGAHGDE 204 FL SA+AIAYCDR++ E Sbjct: 184 FLLSAIAIAYCDRIITQTSQQSTE 207 >ref|YP_747713.1| hypothetical protein Neut_1503 [Nitrosomonas eutropha C91] gb|ABI59748.1| Uncharacterized protein UPF0114 [Nitrosomonas eutropha C91] Length = 206 Score = 301 bits (772), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 148/199 (74%), Positives = 164/199 (82%), Gaps = 5/199 (2%) Query: 8 APKPPRKIGILPNLIFMSRWLQLPLYLGLILAQCVYVYHFWVELVDLIGAAMGNASSLDH 67 P P ++I + +F+SRWLQLPLYLGL+LAQCVYVYHFW+EL DLIGA N ++L H Sbjct: 7 TPPPSKRISSIAYFLFLSRWLQLPLYLGLVLAQCVYVYHFWIELSDLIGAVFSNQNALQH 66 Query: 68 ILDAVAIPGAIRPEK-LNEQTIMLVVLALIDVVMISNLLIMVIVGGYETFVSRMNLEGHP 126 +LD VA+ G R EK L E IMLVVL LIDVVMISNLLIMVI+GGYETFVSRMNLEGHP Sbjct: 67 VLDMVAVKGVERTEKDLTETAIMLVVLGLIDVVMISNLLIMVIIGGYETFVSRMNLEGHP 126 Query: 127 DQPEWLSHVNASVLKVKLATAIIGISSIHLLKTFINANLYDAKTLIAQTGIHIAFLFSAM 186 DQPEWLSHVNASVLKVKLATAIIGISSIHLLKTFINA YD KTLIAQT IH+AFL SA+ Sbjct: 127 DQPEWLSHVNASVLKVKLATAIIGISSIHLLKTFINATAYDEKTLIAQTAIHLAFLLSAL 186 Query: 187 AIAYCDRLMI----HPGAH 201 AIAYCDR++ HPG H Sbjct: 187 AIAYCDRIISQTIQHPGEH 205 >ref|NP_841221.1| hypothetical protein NE1164 [Nitrosomonas europaea ATCC 19718] emb|CAD85075.1| probable transmembrane protein [Nitrosomonas europaea ATCC 19718] Length = 204 Score = 298 bits (764), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 146/191 (76%), Positives = 160/191 (83%) Query: 14 KIGILPNLIFMSRWLQLPLYLGLILAQCVYVYHFWVELVDLIGAAMGNASSLDHILDAVA 73 +I + +F+SRWLQLPLYLGL+LAQCVYVYHFWVELVDLIG+ GN S+L H L+ V Sbjct: 12 RIPAIAYFLFLSRWLQLPLYLGLVLAQCVYVYHFWVELVDLIGSVFGNQSALQHTLEMVT 71 Query: 74 IPGAIRPEKLNEQTIMLVVLALIDVVMISNLLIMVIVGGYETFVSRMNLEGHPDQPEWLS 133 + GA KL E TIMLVVL LIDVVMISNLLIMVI+GGYETFVSRMNLEGHPDQPEWLS Sbjct: 72 VKGAESSGKLTETTIMLVVLGLIDVVMISNLLIMVIIGGYETFVSRMNLEGHPDQPEWLS 131 Query: 134 HVNASVLKVKLATAIIGISSIHLLKTFINANLYDAKTLIAQTGIHIAFLFSAMAIAYCDR 193 HVNASVLKVKLATAIIGISSIHLLKTFINA YD KTLIAQT IH+AFL SA+AIAYCDR Sbjct: 132 HVNASVLKVKLATAIIGISSIHLLKTFINATAYDEKTLIAQTVIHLAFLLSALAIAYCDR 191 Query: 194 LMIHPGAHGDE 204 ++ H DE Sbjct: 192 IISRTIHHADE 202 >ref|YP_004618703.1| membrane protein [Ramlibacter tataouinensis TTB310] gb|AEG92684.1| candidate membrane protein [Ramlibacter tataouinensis TTB310] Length = 224 Score = 272 bits (695), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 142/203 (69%), Positives = 160/203 (78%), Gaps = 3/203 (1%) Query: 1 MKTPSP-QAPKPPRKIGILPNLIFMSRWLQLPLYLGLILAQCVYVYHFWVELVDLIGAAM 59 M+ P+P Q P + LPNLIF SRWLQLPLYLGLI AQ +YVYHFWVELV LI AA Sbjct: 22 MQDPNPLQGKNSPLRP--LPNLIFASRWLQLPLYLGLIAAQAIYVYHFWVELVHLIEAAF 79 Query: 60 GNASSLDHILDAVAIPGAIRPEKLNEQTIMLVVLALIDVVMISNLLIMVIVGGYETFVSR 119 G+ ++L ++ ++ LNE IMLVVLALIDVVMISNLLIMVIVGGYETFVSR Sbjct: 80 GSQAALQQLVTSIGYKSTAPLTSLNETVIMLVVLALIDVVMISNLLIMVIVGGYETFVSR 139 Query: 120 MNLEGHPDQPEWLSHVNASVLKVKLATAIIGISSIHLLKTFINANLYDAKTLIAQTGIHI 179 MNL+GHPDQPEWLSHVNASVLKVKLATAIIGISSIHLLKTFINA+ Y + LIAQT IHI Sbjct: 140 MNLQGHPDQPEWLSHVNASVLKVKLATAIIGISSIHLLKTFINADNYSDRVLIAQTAIHI 199 Query: 180 AFLFSAMAIAYCDRLMIHPGAHG 202 AFL SAMAIAY D++M ++G Sbjct: 200 AFLLSAMAIAYTDKIMSGMASNG 222 >ref|YP_001792089.1| hypothetical protein Lcho_3064 [Leptothrix cholodnii SP-6] gb|ACB35324.1| conserved hypothetical protein [Leptothrix cholodnii SP-6] Length = 197 Score = 271 bits (692), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 140/191 (73%), Positives = 155/191 (81%), Gaps = 4/191 (2%) Query: 5 SPQAPKPPRKIGILPNLIFMSRWLQLPLYLGLILAQCVYVYHFWVELVDLIGAAMGNASS 64 P +PKP G L NLIF SRWLQLPLYLGLILAQ VYV+HFWVELV LI AA GN ++ Sbjct: 3 EPLSPKP----GALANLIFASRWLQLPLYLGLILAQGVYVFHFWVELVHLIEAAFGNQAA 58 Query: 65 LDHILDAVAIPGAIRPEKLNEQTIMLVVLALIDVVMISNLLIMVIVGGYETFVSRMNLEG 124 L ++ ++ I+ +LNE IMLVVLALIDVVMISNLLIMVI+GGYETFVSR+ LE Sbjct: 59 LAQLVGSIGYKSDIQVSQLNETIIMLVVLALIDVVMISNLLIMVIIGGYETFVSRLGLEE 118 Query: 125 HPDQPEWLSHVNASVLKVKLATAIIGISSIHLLKTFINANLYDAKTLIAQTGIHIAFLFS 184 HPDQPEWLSHVNASVLKVKLATAIIGISSIHLLKTFINA Y K L+ QT IHIAFLFS Sbjct: 119 HPDQPEWLSHVNASVLKVKLATAIIGISSIHLLKTFINAENYSEKVLMWQTVIHIAFLFS 178 Query: 185 AMAIAYCDRLM 195 A++IAY DRLM Sbjct: 179 ALSIAYADRLM 189