BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0083.p (297 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774964.1| glutamate racemase [Herbaspirillum seropedic... 586 e-165 ref|YP_001099229.1| glutamate racemase [Herminiimonas arsenicoxy... 326 3e-87 ref|YP_004754001.1| glutamate racemase [Collimonas fungivorans T... 323 1e-86 ref|YP_001352569.1| glutamate racemase [Janthinobacterium sp. Ma... 315 7e-84 ref|ZP_04578288.1| glutamate racemase [Oxalobacter formigenes OX... 283 2e-74 ref|ZP_04576098.1| glutamate racemase [Oxalobacter formigenes HO... 275 5e-72 ref|ZP_08274775.1| Glutamate racemase [Oxalobacteraceae bacteriu... 257 2e-66 ref|YP_003675098.1| glutamate racemase [Methylotenera versatilis... 244 9e-63 ref|YP_004040484.1| glutamate racemase [Methylovorus sp. MP688] ... 242 4e-62 ref|YP_003051915.1| glutamate racemase [Methylovorus glucosetrop... 241 8e-62 >ref|YP_003774964.1| glutamate racemase [Herbaspirillum seropedicae SmR1] gb|ADJ63056.1| glutamate racemase protein [Herbaspirillum seropedicae SmR1] Length = 297 Score = 586 bits (1510), Expect = e-165, Method: Compositional matrix adjust. Identities = 294/297 (98%), Positives = 295/297 (99%) Query: 1 MDEAVKQLRTPSAVRSDSSSPMPTAADAAIGIFDSGIGGLSVLRHIHAALPREQLLYFAD 60 MDEAVKQLRTPSAVRSDSSSPMPTAADAAIGIFDSGIGGLSVLRHIHAALPREQLLYFAD Sbjct: 1 MDEAVKQLRTPSAVRSDSSSPMPTAADAAIGIFDSGIGGLSVLRHIHAALPREQLLYFAD 60 Query: 61 SGYAPYGDKTEAQIVERSLAIASFLLEQRVKALVVACNTATAAAIQAIRTRWPQLLVVGI 120 SGYAPYGDKTEAQIVERSLAIASFLLEQRVKALVVACNTATAAAIQAIRTRWPQLLVVGI Sbjct: 61 SGYAPYGDKTEAQIVERSLAIASFLLEQRVKALVVACNTATAAAIQAIRTRWPQLLVVGI 120 Query: 121 EPGLKPAAQLTRSRTVGVLATRSTLASQRFALLQAQMQAQYQVRYLPQACVGLVDLIEKG 180 EPGLKPAAQLTRSRTVGVLATRSTLASQRFALLQAQMQAQYQVRYLPQACVGLVDLIEKG Sbjct: 121 EPGLKPAAQLTRSRTVGVLATRSTLASQRFALLQAQMQAQYQVRYLPQACVGLVDLIEKG 180 Query: 181 ELHSPPTVQLLERYLAPLLEQGADTLVLGCTHYPFVRPAIESVCKSLVGETPDIIDTGQA 240 ELHSP TVQLLERYLAPLLEQGADTLVLGCTHYPFVRPAIESVCKSLVGETPDIIDTGQA Sbjct: 181 ELHSPATVQLLERYLAPLLEQGADTLVLGCTHYPFVRPAIESVCKSLVGETPDIIDTGQA 240 Query: 241 VTRQLQRLLEAGQLQTRAATGSLAGFTTASRSTLENAFRGLLKLDPPVQALQPQGGG 297 VTRQLQRLLEAGQLQT AA+GSLAGFTTASRSTLENAFRGLLKLDPPVQALQPQGGG Sbjct: 241 VTRQLQRLLEAGQLQTGAASGSLAGFTTASRSTLENAFRGLLKLDPPVQALQPQGGG 297 >ref|YP_001099229.1| glutamate racemase [Herminiimonas arsenicoxydans] emb|CAL61102.1| Glutamate racemase [Herminiimonas arsenicoxydans] Length = 284 Score = 326 bits (836), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 172/280 (61%), Positives = 208/280 (74%), Gaps = 1/280 (0%) Query: 16 SDSSSPMPTAADAAIGIFDSGIGGLSVLRHIHAALPREQLLYFADSGYAPYGDKTEAQIV 75 S S++P P AA+A IGIFDSG+G LSVLRHI A LP E LL FADSGYAPYG K +A+IV Sbjct: 2 SFSATPDPVAAEAPIGIFDSGVGALSVLRHIQARLPSEHLLCFADSGYAPYGGKPDAEIV 61 Query: 76 ERSLAIASFLLEQRVKALVVACNTATAAAIQAIRTRWPQLLVVGIEPGLKPAAQLTRSRT 135 ER+LAIA+FLL ++VKA+VVACNTATAAAI A+R ++P L+VVG+EPGLKPAA ++S Sbjct: 62 ERTLAIAAFLLTKKVKAIVVACNTATAAAIDALRQQYPDLIVVGVEPGLKPAAVFSKSGK 121 Query: 136 VGVLATRSTLASQRFALLQAQMQAQYQVRYLPQACVGLVDLIEKGELHSPPTVQLLERYL 195 GVLAT STLAS RF L+ Q+ V +L QACVGLV+ IEKGEL SP T +LERY+ Sbjct: 122 AGVLATASTLASHRFIALRDQIAETTGVTFLTQACVGLVEQIEKGELSSPETAAMLERYV 181 Query: 196 APLLEQGADTLVLGCTHYPFVRPAIESVCKSLVGETPDIIDTGQAVTRQLQRLLEAGQLQ 255 PLL GADTL LGCTHYPFV+P IE++ + IIDTG+AV+RQL+RLL+ LQ Sbjct: 182 TPLLRGGADTLALGCTHYPFVQPLIEAIAERESAVPVTIIDTGEAVSRQLERLLQQRGLQ 241 Query: 256 T-RAATGSLAGFTTASRSTLENAFRGLLKLDPPVQALQPQ 294 GSL FTT S+S LE+AF LL L P V AL+ + Sbjct: 242 RFENMPGSLQAFTTGSQSALEHAFAKLLDLHPEVTALKAE 281 >ref|YP_004754001.1| glutamate racemase [Collimonas fungivorans Ter331] gb|AEK63178.1| Glutamate racemase [Collimonas fungivorans Ter331] Length = 290 Score = 323 bits (829), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 172/285 (60%), Positives = 200/285 (70%), Gaps = 5/285 (1%) Query: 16 SDSSSPMPTAADAAIGIFDSGIGGLSVLRHIHAALPREQLLYFADSGYAPYGDKTEAQIV 75 + ++ MP A A IGIFDSGIGGLSVLRHIH LP E LLYFADS YAPYGD++EA+I Sbjct: 4 TGNTQEMPMAQSAPIGIFDSGIGGLSVLRHIHQDLPLEDLLYFADSAYAPYGDRSEAEIS 63 Query: 76 ERSLAIASFLLEQRVKALVVACNTATAAAIQAIRTRWPQLLVVGIEPGLKPAAQLTRSRT 135 RSLA+ FLL+Q KALVVACNTAT AAI+AIR +P L V+GIEPGLKPAA +RS+ Sbjct: 64 ARSLAVTGFLLQQGAKALVVACNTATTAAIKAIRNAYPALQVIGIEPGLKPAAAQSRSKI 123 Query: 136 VGVLATRSTLASQRFALLQAQMQAQYQVRYLPQACVGLVDLIEKGELHSPPTVQLLERYL 195 VGVLAT++TL S R LQ Q+ V + Q CVGLVD IEKGEL SP T LL RY+ Sbjct: 124 VGVLATKATLQSARLLALQQQIGEASGVHFELQPCVGLVDQIEKGELRSPQTALLLRRYI 183 Query: 196 APLLEQGADTLVLGCTHYPFVRPAIESVCKSLVGETPDIIDTGQAVTRQLQRLL-EAGQL 254 APL+ QGADTLVLGCTHYPFVRP IE + L IIDTG AV+RQL ++L E L Sbjct: 184 APLIAQGADTLVLGCTHYPFVRPLIEEIVAELASGPVTIIDTGAAVSRQLTKVLGENNLL 243 Query: 255 QTRAATGSLAGFTTASRSTLENAFRGLLKLDPPVQAL----QPQG 295 T A G ++ FTT S+S L F LL+L PPV A+ QP G Sbjct: 244 HTAARAGKVSAFTTGSQSVLSTTFASLLQLHPPVSAVAAIAQPAG 288 >ref|YP_001352569.1| glutamate racemase [Janthinobacterium sp. Marseille] gb|ABR89235.1| glutamate racemase [Janthinobacterium sp. Marseille] Length = 284 Score = 315 bits (806), Expect = 7e-84, Method: Compositional matrix adjust. Identities = 164/274 (59%), Positives = 198/274 (72%), Gaps = 1/274 (0%) Query: 16 SDSSSPMPTAADAAIGIFDSGIGGLSVLRHIHAALPREQLLYFADSGYAPYGDKTEAQIV 75 S S+ P P AADA IGIFDSG+G LSVLRHI A LP E LL FADSGYAPYG K++A I+ Sbjct: 2 SFSAYPDPVAADAPIGIFDSGVGALSVLRHIQARLPSEHLLCFADSGYAPYGGKSDAAII 61 Query: 76 ERSLAIASFLLEQRVKALVVACNTATAAAIQAIRTRWPQLLVVGIEPGLKPAAQLTRSRT 135 ER+L IA+FL + +KA+VVACNTATAAAI+A+R +PQL++VG+EPGLKPAA ++S Sbjct: 62 ERTLDIAAFLTTKNIKAIVVACNTATAAAIEALRQHYPQLIIVGVEPGLKPAAVFSKSGK 121 Query: 136 VGVLATRSTLASQRFALLQAQMQAQYQVRYLPQACVGLVDLIEKGELHSPPTVQLLERYL 195 GVLAT STLAS RF L+ Q+ + +L QACVGLV+ IEKGEL S T+ +LERY+ Sbjct: 122 AGVLATASTLASSRFIALRDQISTSTGITFLTQACVGLVEQIEKGELDSTETIAMLERYV 181 Query: 196 APLLEQGADTLVLGCTHYPFVRPAIESVCKSLVGETPDIIDTGQAVTRQLQRLLEAGQLQ 255 PLL GADTL LGCTHYPFV+PAIE + + IIDTG+AV+RQL+RLL+ LQ Sbjct: 182 TPLLRGGADTLALGCTHYPFVQPAIEVIAQRESAVPVTIIDTGEAVSRQLERLLQQRGLQ 241 Query: 256 TRAAT-GSLAGFTTASRSTLENAFRGLLKLDPPV 288 T GSL FTT +R L AF LL P V Sbjct: 242 RFETTAGSLQAFTTGNRDALVAAFAKLLNQHPSV 275 >ref|ZP_04578288.1| glutamate racemase [Oxalobacter formigenes OXCC13] gb|EEO29261.1| glutamate racemase [Oxalobacter formigenes OXCC13] Length = 283 Score = 283 bits (724), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 149/275 (54%), Positives = 184/275 (66%), Gaps = 4/275 (1%) Query: 16 SDSSSPMPTAADAAIGIFDSGIGGLSVLRHIHAALPREQLLYFADSGYAPYGDKTEAQIV 75 SD+S + A IGIFDSG+GGLSVLRHI LP E+L+YFADSGYAPYGDK E +V Sbjct: 6 SDNSGKL--KASGPIGIFDSGVGGLSVLRHIATQLPDEELVYFADSGYAPYGDKPEEFVV 63 Query: 76 ERSLAIASFLLEQRVKALVVACNTATAAAIQAIRTRWPQLLVVGIEPGLKPAAQLTRSRT 135 ERS I FLL+Q +KALVVACNTATA AI +R ++P L +VG+EPGLKPAA T + T Sbjct: 64 ERSFLITDFLLKQDIKALVVACNTATAMAIHLLREKYPDLPIVGVEPGLKPAAAKTITGT 123 Query: 136 VGVLATRSTLASQRFALLQAQMQAQYQVRYLPQACVGLVDLIEKGELHSPPTVQLLERYL 195 VGV+AT TLAS +F +L + Q V ++ QAC G+ DLIE EL S P +L++RYL Sbjct: 124 VGVMATERTLASNKFHVLHQLLNDQTGVHFIMQACNGMADLIEHAELDSEPIFELVQRYL 183 Query: 196 APLLEQGADTLVLGCTHYPFVRPAIESVCKSLVGETPDIIDTGQAVTRQLQRLLEAGQLQ 255 PLLEQ ADT+VLGCTHYPFVR IE V +IIDTG AV RQL+ LL+ L Sbjct: 184 LPLLEQKADTIVLGCTHYPFVRHVIEKVAADYGSTQLNIIDTGYAVARQLKHLLDIYGLN 243 Query: 256 TRAAT-GSLA-GFTTASRSTLENAFRGLLKLDPPV 288 + SL +T+ +T+ + LL+ D PV Sbjct: 244 KNGCSPDSLVRAYTSGDPATISHLISRLLQTDMPV 278 >ref|ZP_04576098.1| glutamate racemase [Oxalobacter formigenes HOxBLS] gb|EEO27060.1| glutamate racemase [Oxalobacter formigenes HOxBLS] Length = 273 Score = 275 bits (704), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 138/264 (52%), Positives = 176/264 (66%), Gaps = 2/264 (0%) Query: 30 IGIFDSGIGGLSVLRHIHAALPREQLLYFADSGYAPYGDKTEAQIVERSLAIASFLLEQR 89 IG+FDSG+GGLSVLRHI + LP E L+YFADSGYAPYGDK+E ++ER+ IA F L+Q Sbjct: 8 IGVFDSGVGGLSVLRHIRSQLPGENLIYFADSGYAPYGDKSEEFVIERAFKIAGFFLKQG 67 Query: 90 VKALVVACNTATAAAIQAIRTRWPQLLVVGIEPGLKPAAQLTRSRTVGVLATRSTLASQR 149 +KALVVACNTATA I +R ++P+L +VG+EPGLKPAA T + VGV+AT TLAS + Sbjct: 68 IKALVVACNTATAITIHLLREKYPELPIVGVEPGLKPAAAKTITGIVGVMATERTLASNK 127 Query: 150 FALLQAQMQAQYQVRYLPQACVGLVDLIEKGELHSPPTVQLLERYLAPLLEQGADTLVLG 209 F +L + Q V ++ Q C G+ DLIE EL S P L+ RYL P+LEQ ADT+VLG Sbjct: 128 FHVLHQLLNDQTGVHFIMQPCPGMADLIEHEELDSEPVFNLVRRYLTPILEQNADTVVLG 187 Query: 210 CTHYPFVRPAIESVCKSLVGETPDIIDTGQAVTRQLQRLLEAGQLQTRAATGSL--AGFT 267 CTHYPFVR IE + + IIDTG AV RQL+ LL+ L ++ + A FT Sbjct: 188 CTHYPFVRHVIEKIAAEAGNPSLHIIDTGYAVARQLKHLLDIYGLNSKGRETDIQTAAFT 247 Query: 268 TASRSTLENAFRGLLKLDPPVQAL 291 + T+ LL++D PV L Sbjct: 248 SGDPQTISRLIGRLLQIDMPVSYL 271 >ref|ZP_08274775.1| Glutamate racemase [Oxalobacteraceae bacterium IMCC9480] gb|EGF31763.1| Glutamate racemase [Oxalobacteraceae bacterium IMCC9480] Length = 275 Score = 257 bits (656), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 143/262 (54%), Positives = 183/262 (69%) Query: 23 PTAADAAIGIFDSGIGGLSVLRHIHAALPREQLLYFADSGYAPYGDKTEAQIVERSLAIA 82 P AA+A IG+FDSGIGGLSVLRHI A LP+E LLYF+D+ +APYG + E QI ER+LAI Sbjct: 5 PMAANAPIGVFDSGIGGLSVLRHIRANLPQEALLYFSDAQFAPYGGRPEQQIEERALAIG 64 Query: 83 SFLLEQRVKALVVACNTATAAAIQAIRTRWPQLLVVGIEPGLKPAAQLTRSRTVGVLATR 142 + L+ +VKALVVACN+ATAAAI A+R +P L+VVG+EPGLKPAA ++ SR VGVLAT Sbjct: 65 ALLVAHQVKALVVACNSATAAAIAALRHAYPALIVVGVEPGLKPAAAVSASRIVGVLATE 124 Query: 143 STLASQRFALLQAQMQAQYQVRYLPQACVGLVDLIEKGELHSPPTVQLLERYLAPLLEQG 202 +TLAS+RFA L+ + A V +L Q C GL IE+ +H P + LL ++ PLL+QG Sbjct: 125 ATLASERFARLRMTLSAATGVTFLAQPCPGLALRIEQDSMHLPDAMALLRSFVLPLLDQG 184 Query: 203 ADTLVLGCTHYPFVRPAIESVCKSLVGETPDIIDTGQAVTRQLQRLLEAGQLQTRAATGS 262 ADTLVLGCTHYPFV+ I ++ + + +IDTG AV RQL L L + S Sbjct: 185 ADTLVLGCTHYPFVQEQIAAIASAHSTNSVTLIDTGAAVARQLASQLHIQGLLRQDGAPS 244 Query: 263 LAGFTTASRSTLENAFRGLLKL 284 +AG ++A+ LE AF LL L Sbjct: 245 VAGLSSANAVDLERAFLRLLGL 266 >ref|YP_003675098.1| glutamate racemase [Methylotenera versatilis 301] gb|ADI30521.1| glutamate racemase [Methylotenera versatilis 301] Length = 283 Score = 244 bits (624), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 131/244 (53%), Positives = 171/244 (70%), Gaps = 10/244 (4%) Query: 18 SSSPMPTAADAAIGIFDSGIGGLSVLRHIHAALPREQLLYFADSGYAPYGDKTEAQIVER 77 + +P+ + I +FDSG+GG+SVL+HI A LP EQLLY ADS YAPYG+KT A+I R Sbjct: 9 NETPVNKPIEKPIAVFDSGVGGISVLKHIQALLPNEQLLYVADSKYAPYGNKTAAEIQAR 68 Query: 78 SLAIASFLLEQRVKALVVACNTATAAAIQAIRTRWPQLLVVGIEPGLKPAAQLTRSRTVG 137 IA FL+ + KALVVACNTATAAAI ++R R+ L ++G+EP +KPAA+ +R+ +G Sbjct: 69 CFEIAEFLMAKDAKALVVACNTATAAAIDSLRERY-SLPIIGMEPAVKPAAEASRNGIIG 127 Query: 138 VLATRSTLASQRFA-LLQAQMQAQYQVRYLPQACVGLVDLIEKGELHSPPTVQLLERYLA 196 VLAT TL S +FA LL++ + V+ + QACVGLV+ IE+GEL + T L+++Y A Sbjct: 128 VLATTGTLKSAQFAGLLESYGR---NVKVVTQACVGLVECIERGELDADNTKMLIQQYCA 184 Query: 197 PLLEQGADTLVLGCTHYPFVRPAIESVCKSLVGETPDIIDTGQAVTRQLQRLL-EAGQLQ 255 PLL +GADT+VLGCTHYPFVR IE V VG +IDTG AV +QL+R L E G L Sbjct: 185 PLLAEGADTIVLGCTHYPFVRHLIEQV----VGANVALIDTGAAVAKQLKRQLEEKGLLS 240 Query: 256 TRAA 259 R A Sbjct: 241 NRTA 244 >ref|YP_004040484.1| glutamate racemase [Methylovorus sp. MP688] gb|ADQ85248.1| glutamate racemase [Methylovorus sp. MP688] Length = 297 Score = 242 bits (618), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 133/231 (57%), Positives = 170/231 (73%), Gaps = 10/231 (4%) Query: 27 DAAIGIFDSGIGGLSVLRHIHAALPREQLLYFADSGYAPYGDKTEAQIVERSLAIASFLL 86 D+ +G+FDSG+GGLSVL HI ALP+E L+Y ADS +APYG K++A I++R++ ++ FL+ Sbjct: 35 DSPVGVFDSGVGGLSVLAHIRQALPQESLIYAADSMHAPYGSKSQAFIIDRAIQLSDFLI 94 Query: 87 EQRVKALVVACNTATAAAIQAIRTRWPQLLVVGIEPGLKPAAQLTRSRTVGVLATRSTLA 146 + KALVVACNTATAAAI +R+R+ + ++G+EP +KPAA TRS +GVLAT TL Sbjct: 95 SRGAKALVVACNTATAAAISELRSRYA-IPIIGMEPAVKPAAAATRSGVIGVLATSGTLQ 153 Query: 147 SQRF-ALLQAQMQAQYQVRYLPQACVGLVDLIEKGELHSPPTVQLLERYLAPLLEQGADT 205 S +F ALL++ + QVR QACVGLV+ IE+GEL + T QLLE+Y+ PLLE GADT Sbjct: 154 SAQFAALLESYGR---QVRVETQACVGLVECIERGELQTADTRQLLEKYIQPLLEAGADT 210 Query: 206 LVLGCTHYPFVRPAIESVCKSLVGETPDIIDTGQAVTRQLQ-RLLEAGQLQ 255 LVLGCTHYPFVRP IE L G IIDTG AV RQL+ RL EA L+ Sbjct: 211 LVLGCTHYPFVRPLIE----ELAGPEVAIIDTGAAVARQLKHRLQEADLLK 257 >ref|YP_003051915.1| glutamate racemase [Methylovorus glucosetrophus SIP3-4] gb|ACT51388.1| glutamate racemase [Methylovorus glucosetrophus SIP3-4] Length = 273 Score = 241 bits (616), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 133/231 (57%), Positives = 170/231 (73%), Gaps = 10/231 (4%) Query: 27 DAAIGIFDSGIGGLSVLRHIHAALPREQLLYFADSGYAPYGDKTEAQIVERSLAIASFLL 86 D+ +G+FDSG+GGLSVL HI ALP+E L+Y ADS +APYG K++A I++R++ ++ FL+ Sbjct: 11 DSPVGVFDSGVGGLSVLAHIRQALPQELLIYAADSMHAPYGSKSQAFIIDRAIQLSDFLI 70 Query: 87 EQRVKALVVACNTATAAAIQAIRTRWPQLLVVGIEPGLKPAAQLTRSRTVGVLATRSTLA 146 + KALVVACNTATAAAI +R+R+ + ++G+EP +KPAA TRS +GVLAT TL Sbjct: 71 SRGAKALVVACNTATAAAISELRSRY-VIPIIGMEPAVKPAAAATRSGVIGVLATSGTLQ 129 Query: 147 SQRF-ALLQAQMQAQYQVRYLPQACVGLVDLIEKGELHSPPTVQLLERYLAPLLEQGADT 205 S +F ALL++ + QVR QACVGLV+ IE+GEL + T QLLE+Y+ PLLE GADT Sbjct: 130 SAQFAALLESYGR---QVRVETQACVGLVECIERGELQTAATRQLLEKYIQPLLEAGADT 186 Query: 206 LVLGCTHYPFVRPAIESVCKSLVGETPDIIDTGQAVTRQLQ-RLLEAGQLQ 255 LVLGCTHYPFVRP IE L G IIDTG AV RQL+ RL EA L+ Sbjct: 187 LVLGCTHYPFVRPLIE----ELAGPEVAIIDTGAAVARQLKHRLQEADLLK 233