BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0076.p (519 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774957.1| response regulator containing a CheY-like re... 1050 0.0 ref|YP_002947547.1| diguanylate cyclase [Variovorax paradoxus S1... 357 3e-96 ref|YP_004752514.1| putative GGDEF domain-containing protein [Co... 353 5e-95 ref|YP_001479297.1| diguanylate cyclase [Serratia proteamaculans... 330 3e-88 ref|YP_001100015.1| GGDEF domain-containing protein [Herminiimon... 326 8e-87 ref|ZP_07042728.1| diguanylate cyclase [Comamonas testosteroni S... 319 8e-85 ref|YP_003279052.1| diguanylate cyclase [Comamonas testosteroni ... 318 1e-84 ref|ZP_06190751.1| diguanylate cyclase [Serratia odorifera 4Rx13... 306 5e-81 ref|YP_004353992.1| diguanylate cyclase [Pseudomonas brassicacea... 305 9e-81 ref|YP_004501568.1| diguanylate cyclase [Serratia sp. AS12] >gi|... 304 3e-80 >ref|YP_003774957.1| response regulator containing a CheY-like receiver domain and a GGDEF domain transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ63049.1| response regulator containing a CheY-like receiver domain and a GGDEF domain transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 554 Score = 1050 bits (2714), Expect = 0.0, Method: Compositional matrix adjust. Identities = 517/519 (99%), Positives = 517/519 (99%) Query: 1 VILLLEAWTAWRAREVALSESTTDASNVALALIQHAEQSIKEADIVLETVQEHLDHEDRS 60 VILLLEAWTAWRAREVALSESTTDASNVALALIQHAEQSIKEADIVLETVQEHLDHEDRS Sbjct: 36 VILLLEAWTAWRAREVALSESTTDASNVALALIQHAEQSIKEADIVLETVQEHLDHEDRS 95 Query: 61 ASARIRTHDFMIRSVASLPQLAQLTVVDEQGRTVASSQQRMVQTGSPVQDDYFQYHQHRR 120 ASARIRTHDFMIRSVASLPQLAQLTVVDEQGRTVASSQQRMVQTGSPVQDDYFQYHQHRR Sbjct: 96 ASARIRTHDFMIRSVASLPQLAQLTVVDEQGRTVASSQQRMVQTGSPVQDDYFQYHQHRR 155 Query: 121 SDRPFIGQPMRSHVTGQRTLTVSRRINHVDGSFAGVIVAEIDLAYFQRYYEQFNIGPHGV 180 SDRPFIGQPMRSHVTGQRTLTVSRRINHVDGSFAGVIVAEIDLAYFQRYYEQFNIGPHGV Sbjct: 156 SDRPFIGQPMRSHVTGQRTLTVSRRINHVDGSFAGVIVAEIDLAYFQRYYEQFNIGPHGV 215 Query: 181 ILFGLTGGSLILRRPLLADMTDRSPAMSEALRKHMEQARRGSFAMRSERDGVERISCFQQ 240 ILFGLTGGSLILRRPLLADMTDRSPAMSEALRKHMEQARRGSFAMRSERDGVERISCFQQ Sbjct: 216 ILFGLTGGSLILRRPLLADMTDRSPAMSEALRKHMEQARRGSFAMRSERDGVERISCFQQ 275 Query: 241 GEAYPIFTVVALAKDDILEDWSRHVWVRGIGVVLLLAVICFGGKRLVVLVAGRERAEAQA 300 GEAYPIFTVVALAKDDILEDWSRHVWVRGIGVVLLLAVICFGGKRLVVLVAGRERAEAQA Sbjct: 276 GEAYPIFTVVALAKDDILEDWSRHVWVRGIGVVLLLAVICFGGKRLVVLVAGRERAEAQA 335 Query: 301 IAARQELESLYRTLEAQSQKDGLTDVFNRRYFDAALAAELARLNRTGESLSLMMIDVDHF 360 IAARQELESLYRTLEAQSQKDGLTDVFNRRYFDAALAAELARLNRTGESLSLMMIDVDHF Sbjct: 336 IAARQELESLYRTLEAQSQKDGLTDVFNRRYFDAALAAELARLNRTGESLSLMMIDVDHF 395 Query: 361 KQFNDTYGHAAGDVCLRQVAAAISTVARRQGDIVARYGGEEFAVILPNCHPGSAQGLAHR 420 KQFNDTYGHAAGDVCLRQVAAAISTVARRQGDIVARYGGEEFAVILPNCHPGSAQGLAHR Sbjct: 396 KQFNDTYGHAAGDVCLRQVAAAISTVARRQGDIVARYGGEEFAVILPNCHPGSAQGLAHR 455 Query: 421 VVQAVRGLEIAHERSPMGVVTISVGVASLASGKSLQIEPRELIDSADGALYRAKEEGRDR 480 VVQAVRGLEIAHERSPMGVVTISVGVASLASGKSL IEPRELIDSADGALYRAKEEGRDR Sbjct: 456 VVQAVRGLEIAHERSPMGVVTISVGVASLASGKSLLIEPRELIDSADGALYRAKEEGRDR 515 Query: 481 AVQRPFASAATPAQKATEDAAKSSLQAASGAPSDYLTVR 519 AVQRPFASAA PAQKATEDAAKSSLQAASGAPSDYLTVR Sbjct: 516 AVQRPFASAAAPAQKATEDAAKSSLQAASGAPSDYLTVR 554 >ref|YP_002947547.1| diguanylate cyclase [Variovorax paradoxus S110] gb|ACS22281.1| diguanylate cyclase [Variovorax paradoxus S110] Length = 512 Score = 357 bits (916), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 195/480 (40%), Positives = 284/480 (59%), Gaps = 1/480 (0%) Query: 2 ILLLEAWTAWRAREVALSESTTDASNVALALIQHAEQSIKEADIVLETVQEHLDHEDRSA 61 +L ++ W +W AR L + SN++ A+ Q A+ +IK+AD VL + E ++H+ Sbjct: 22 LLAIDFWNSWEARTDQLQQMNVATSNLSRAMAQQADDTIKKADTVLVGMVERVEHDGTDP 81 Query: 62 SARIRTHDFMIRSVASLPQLAQLTVVDEQGRTVASSQQRMVQTGSPVQDDYFQYHQHRRS 121 S R + VA LPQL L + D+ G +A+S+ + + +YF +H+ Sbjct: 82 SDVARLRQLLALRVAELPQLDGLHIYDQDGNWIANSRPTRPENLNNADREYFAFHRTHAE 141 Query: 122 DRPFIGQPMRSHVTGQRTLTVSRRINHVDGSFAGVIVAEIDLAYFQRYYEQFNIGPHGVI 181 P IG P++S +G+ + VSRRINH DGSFAGV +A I + +F R+Y+ +IG G + Sbjct: 142 RGPHIGIPVQSRTSGRLLVPVSRRINHADGSFAGVALATIHVDFFSRFYDSLDIGQAGAV 201 Query: 182 LFGLTGGSLILRRPLLADMTDRSPAMSEALRKHMEQARRGSFAMRSERDGVERISCFQQG 241 L G+++ RRP DM R+ ++ R + G+ ++S +DGV R++ F++ Sbjct: 202 ALVLENGTMMTRRPYSPDMVGRNMLETQLFRSYAAHGPVGTAYIKSAQDGVTRLNSFRRL 261 Query: 242 EAYPIFTVVALAKDDILEDWSRHVWVRGIGVVLLLAVICFGGKRLVVLVAGRERAEAQAI 301 + YP+F AL+KD+IL +W R GVVLL ++ F G RLV + R EA+ Sbjct: 262 DNYPLFVSAALSKDEILANWWRDTLWHSGGVVLLSLIVGFIGWRLVRQFQLQTRTEAELR 321 Query: 302 AARQELESLYRTLEAQSQKDGLTDVFNRRYFDAALAAELARLNRTGESLSLMMIDVDHFK 361 AR LE+L +TL + +DGLT + NRR FD AL +E +R R +L+L+M+DVD FK Sbjct: 322 QARDALETLNKTLNTLAMEDGLTGLANRRQFDVALDSEYSRAARNASTLALIMMDVDCFK 381 Query: 362 QFNDTYGHAAGDVCLRQVAAAISTVA-RRQGDIVARYGGEEFAVILPNCHPGSAQGLAHR 420 Q+ND YGHAAGD CL+ + I+ VA RR GD+ ARYGGEE AV+LPN A LA R Sbjct: 382 QYNDIYGHAAGDECLQTIGRTIARVASRRPGDLAARYGGEELAVLLPNTDVAGAVMLAER 441 Query: 421 VVQAVRGLEIAHERSPMGVVTISVGVASLASGKSLQIEPRELIDSADGALYRAKEEGRDR 480 + AVR L+I H + G VT+S GV +L+ + +P+ELI SAD ALY AK GR+R Sbjct: 442 IRSAVRELKIEHAGTADGFVTLSAGVDALSPQAGIGGQPKELIRSADKALYAAKSGGRNR 501 >ref|YP_004752514.1| putative GGDEF domain-containing protein [Collimonas fungivorans Ter331] gb|AEK61691.1| putative GGDEF domain protein [Collimonas fungivorans Ter331] Length = 521 Score = 353 bits (906), Expect = 5e-95, Method: Compositional matrix adjust. Identities = 187/479 (39%), Positives = 286/479 (59%), Gaps = 1/479 (0%) Query: 2 ILLLEAWTAWRAREVALSESTTDASNVALALIQHAEQSIKEADIVLETVQEHLDHEDRSA 61 ++ +E W +W AR + L E+ SN+A AL QHA+ +IKEAD VL + E L+ + + Sbjct: 36 LMSVEVWRSWNARNIELHETEIATSNLARALSQHADDTIKEADTVLVGLVERLEVDGTGS 95 Query: 62 SARIRTHDFMIRSVASLPQLAQLTVVDEQGRTVASSQQRMVQTGSPVQDDYFQYHQHRRS 121 ++ R H +I +A LPQL L++ DE G +A+++ V + YF+YH+ Sbjct: 96 ASLERLHALLIHHIAELPQLNDLSIYDETGLWLANARTGPVPLVNNSDRQYFRYHRSHPG 155 Query: 122 DRPFIGQPMRSHVTGQRTLTVSRRINHVDGSFAGVIVAEIDLAYFQRYYEQFNIGPHGVI 181 P+IG P+RS TG +TVSRR NH DGSFAG+++ I++ YF++YY+ F+IG G I Sbjct: 156 RGPYIGPPVRSRSTGAWIVTVSRRYNHADGSFAGLVLGTINIDYFKKYYDSFDIGRAGSI 215 Query: 182 LFGLTGGSLILRRPLLADMTDRSPAMSEALRKHMEQARRGSFAMRSERDGVERISCFQQG 241 L G++++RRP++ D ++ + R + ++ G+ M+S++DG+ER+ ++ Sbjct: 216 FLSLNDGTMLVRRPMMDDTIGKNLSNYPIYRDYASRSAVGTAIMKSDQDGIERLIAYRHL 275 Query: 242 EAYPIFTVVALAKDDILEDWSRHVWVRGIGVVLLLAVICFGGKRLVVLVAGRERAEAQAI 301 + YP+F VA +K+++L +W ++ G +LL + G RL+ + R AE + Sbjct: 276 QQYPLFVTVARSKNEVLAEWRADTYLHLFGAMLLTLALGLLGWRLIHQIRLRLLAENDLL 335 Query: 302 AARQELESLYRTLEAQSQKDGLTDVFNRRYFDAALAAELARLNRTGESLSLMMIDVDHFK 361 ++ L L R LE + +D LT + NRR FD AL E +R RT SL+L+MIDVD+FK Sbjct: 336 CVQESLRMLNRHLEQLALQDSLTGLANRRQFDNALRDEFSRAMRTENSLALVMIDVDYFK 395 Query: 362 QFNDTYGHAAGDVCLRQVAAAISTVARRQGDIVARYGGEEFAVILPNCHPGSAQGLAHRV 421 Q+ND YGH AGD CLRQ++ + R GD+ ARYGGEE V+LP+ + A +A ++ Sbjct: 396 QYNDIYGHLAGDECLRQISEIVKASKNRPGDLAARYGGEELVVLLPDTNLAGAVAVAEKI 455 Query: 422 VQAVRGLEIAHERSPMGVVTISVGVASLASGKSLQIEPRELIDSADGALYRAKEEGRDR 480 A+ L I H S G+VT+S GV + + I P ELI +AD ALY AK GR+R Sbjct: 456 RVAICNLHIEHPSSTFGLVTVSAGVDAFVPVRDDNI-PFELIQAADRALYAAKSAGRNR 513 >ref|YP_001479297.1| diguanylate cyclase [Serratia proteamaculans 568] gb|ABV42169.1| diguanylate cyclase [Serratia proteamaculans 568] Length = 516 Score = 330 bits (847), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 176/479 (36%), Positives = 269/479 (56%), Gaps = 1/479 (0%) Query: 2 ILLLEAWTAWRAREVALSESTTDASNVALALIQHAEQSIKEADIVLETVQEHLDHEDRSA 61 ++L AW W A + L + +++N+A AL QHA+ + + D L + E + + + Sbjct: 35 LILFNAWQIWNAHQRDLQSAENESANLARALAQHADDTFMQTDSTLSDLSERIQVDGLAR 94 Query: 62 SARIRTHDFMIRSVASLPQLAQLTVVDEQGRTVASSQQRMVQTGSPVQDDYFQYHQHRRS 121 +R M V +LPQL L V D QG V +S R VQ + +YF+YH S Sbjct: 95 PQLLRLQKVMQTQVGNLPQLHGLFVYDAQGNWVVTSSGRFVQNANNADREYFKYHLEHNS 154 Query: 122 DRPFIGQPMRSHVTGQRTLTVSRRINHVDGSFAGVIVAEIDLAYFQRYYEQFNIGPHGVI 181 + +IG+ +RS TG + VSRR NH DGSFAGV++A + + YF+++Y+ F + + Sbjct: 155 NAVYIGKVVRSRSTGDLIIPVSRRFNHPDGSFAGVVLATLYINYFRQFYDTFALNSDASL 214 Query: 182 LFGLTGGSLILRRPLLADMTDRSPAMSEALRKHMEQARRGSFAMRSERDGVERISCFQQG 241 L G+++ RRP ++ + R+ + + G+ + S D VERI + + Sbjct: 215 NLLLADGTILYRRPYSLAAIGKNISEGVLFREILPHSEFGNATITSRYDKVERIYGYSRV 274 Query: 242 EAYPIFTVVALAKDDILEDWSRHVWVRGIGVVLLLAVICFGGKRLVVLVAGRERAEAQAI 301 YP+ L+K D+L DW + +G LLA++ G L+ + R EA+ + Sbjct: 275 TRYPLVIAAGLSKKDVLADWRNDSGLFALGGATLLAILLAMGMVLMRQINHSVRTEAELM 334 Query: 302 AARQELESLYRTLEAQSQKDGLTDVFNRRYFDAALAAELARLNRTGESLSLMMIDVDHFK 361 R +L S+ RTLE + DGLT + NRR FD AL EL R +R S++L+M+D+D+FK Sbjct: 335 RTRDQLTSINRTLEELALLDGLTGLANRRQFDIALKNELMRASRNYRSVALLMLDIDYFK 394 Query: 362 QFNDTYGHAAGDVCLRQVAAAISTVARRQGDIVARYGGEEFAVILPNCHPGSAQGLAHRV 421 Q+ND YGH AGD CL+Q+ + +A R DI+ARYGGEE A+ILP+ A A RV Sbjct: 395 QYNDIYGHVAGDQCLQQIGQMLKGMASRSNDIMARYGGEEMAIILPDTDAQGALIFAERV 454 Query: 422 VQAVRGLEIAHERSPMGVVTISVGVASLASGKSLQIEPRELIDSADGALYRAKEEGRDR 480 ++AVR L+I H+ +P GV+TIS+G+ + P I+ AD ALY+AK +G++R Sbjct: 455 IEAVRELKIPHDGNPHGVITISIGIYAKVP-HMYNDTPMSFINQADSALYQAKAQGKNR 512 >ref|YP_001100015.1| GGDEF domain-containing protein [Herminiimonas arsenicoxydans] emb|CAL61890.1| conserved hypothetical protein, GGDEF domain [Herminiimonas arsenicoxydans] Length = 519 Score = 326 bits (835), Expect = 8e-87, Method: Compositional matrix adjust. Identities = 182/489 (37%), Positives = 281/489 (57%), Gaps = 1/489 (0%) Query: 1 VILLLEAWTAWRAREVALSESTTDASNVALALIQHAEQSIKEADIVLETVQEHLDHEDRS 60 +++ + A AW AR + E+ T SN+A AL QHAE ++ D +L +++E L+ + + Sbjct: 30 LLVCILALNAWHARAEKIRETETATSNMAKALAQHAEDTVGGIDNLLVSMEEMLERDSWN 89 Query: 61 ASARIRTHDFMIRSVASLPQLAQLTVVDEQGRTVASSQQRMVQTGSPVQDDYFQYHQHRR 120 R + F+ + V LP L L V DE G+ VA+SQ+ + + +YF +H+ Sbjct: 90 PLQLERMNQFLRQRVTDLPLLHGLFVYDEHGQWVANSQETLRTDLNNADREYFIFHRTHT 149 Query: 121 SDRPFIGQPMRSHVTGQRTLTVSRRINHVDGSFAGVIVAEIDLAYFQRYYEQFNIGPHGV 180 P +G P+RS TG +TVSRR+ H DG+FAGV++A I++ YF YY+ F+IG G Sbjct: 150 DSGPHLGPPIRSRSTGDWIITVSRRLEHADGNFAGVVLATINMQYFSAYYKDFDIGKAGA 209 Query: 181 ILFGLTGGSLILRRPLLADMTDRSPAMSEALRKHMEQARRGSFAMRSERDGVERISCFQQ 240 I+ G+L++RRP + + + + Q G+ + + D ERI ++ Sbjct: 210 IVLTTDSGTLLVRRPFDEAVIGGDISNGPVYQFYKRQGSSGTAILTANIDRTERIYSYRH 269 Query: 241 GEAYPIFTVVALAKDDILEDWSRHVWVRGIGVVLLLAVICFGGKRLVVLVAGRERAEAQA 300 + YP+ VA + D++LE W ++L ++ G RLV + RERA+++ Sbjct: 270 LDRYPLLIAVAQSTDEVLESWRNSTMRFAFFSAMVLLLLWLLGARLVHQITVRERAQSEL 329 Query: 301 IAARQELESLYRTLEAQSQKDGLTDVFNRRYFDAALAAELARLNRTGESLSLMMIDVDHF 360 AR +LE L A + D LT + NRR FDAAL E AR R SL+L+M+DVDHF Sbjct: 330 RTARDDLERSNGELAALALLDSLTGLANRRRFDAALDDEFARAMRNQTSLALIMLDVDHF 389 Query: 361 KQFNDTYGHAAGDVCLRQVAAAISTVARRQGDIVARYGGEEFAVILPNCHPGSAQGLAHR 420 K++ND YGH GD CL++++ + T R GD+VARYGGEEF ++LP A +A R Sbjct: 390 KKYNDRYGHPQGDECLKEISKILKTATARTGDLVARYGGEEFVILLPGTDRAGAAAVAER 449 Query: 421 VVQAVRGLEIAHERSPMGVVTISVGVASLASGKSLQIEPRELIDSADGALYRAKEEGRDR 480 V A++ L + H +P G+VT S+G+A+L + Q P++L+ +AD ALY+AKE+GR++ Sbjct: 450 VRLAIQALNMEHAETPDGIVTASLGIAALIPQRQ-QNSPQQLVHAADQALYKAKEDGRNQ 508 Query: 481 AVQRPFASA 489 + ASA Sbjct: 509 SCISTQASA 517 >ref|ZP_07042728.1| diguanylate cyclase [Comamonas testosteroni S44] gb|EFI63649.1| diguanylate cyclase [Comamonas testosteroni S44] Length = 522 Score = 319 bits (817), Expect = 8e-85, Method: Compositional matrix adjust. Identities = 182/481 (37%), Positives = 270/481 (56%), Gaps = 3/481 (0%) Query: 2 ILLLEAWTAWRAREVALSESTTDASNVALALIQHAEQSIKEADIVLETVQEHLDHEDRSA 61 +L+ +W W A + LSE T+ N+A L +AE ++ ++L + E L+ E + Sbjct: 42 VLVATSWQIWSAHQRTLSEIDTNNRNLAQTLNTYAEGVFTQSSMLLLGMLERLEVEGTTP 101 Query: 62 SARIRTHDFMIRSVASLPQLAQLTVVDEQGRTVASSQQRMVQTGSPVQDDYFQYHQHRRS 121 R + R L QL +L V+D G+ + SS+ + ++ + +F YH+ S Sbjct: 102 EHLARMQQLVGRQEHLLSQLNELLVIDASGKWLMSSRGKFLEGSNSADRRFFSYHRDNPS 161 Query: 122 DRPFIGQPMRSHVTGQRTLTVSRRINHVDGSFAGVIVAEIDLAYFQRYYEQFNIGPHGVI 181 FIG P+RS TG+ LT+SRR + +G FAGVIV + + F + + ++G G I Sbjct: 162 HEIFIGAPIRSRSTGEWVLTISRRFENQEGDFAGVIVVVLGIENFLHLFGKIDVGEQGSI 221 Query: 182 LFGLTGGSLILRRPLLADMTDRSPAMSEALRKHMEQARRGSFAMRSERDGVERISCFQQG 241 F T G L++R P R + S ++ + G+ + S DG ER+ F+ Sbjct: 222 GFATTSGQLLVRYPFREQDLGRDFSRSPNFLRYYSNLKSGTASFESGIDGTERLYAFRSN 281 Query: 242 EAYPIFTVVALAKDDILEDWSRHVWVRGIGVVL-LLAVICFGGKRLVVLVAGRERAEAQA 300 + YP+FTVVA + + L+ W + GVVL LLAV+ G RL++L+ R +AE Sbjct: 282 DRYPVFTVVARGRYEALQAWRSQALLTA-GVVLGLLAVVTLIGWRLILLIRQRAQAETSL 340 Query: 301 IAARQELESLYRTLEAQSQKDGLTDVFNRRYFDAALAAELARLNRTGESLSLMMIDVDHF 360 +A R++L LE +D LT + NRR FD L E+ R R G LSL++ID+DHF Sbjct: 341 MAVREKLLDANLELERLVTQDSLTGLANRRRFDEVLQLEVRRAARDGTVLSLLLIDLDHF 400 Query: 361 KQFNDTYGHAAGDVCLRQVAAAISTVARRQGDIVARYGGEEFAVILPNCHPGSAQGLAHR 420 K FND YGH AGD CL+ V+ + A+R GD+ ARYGGEE A+ILPN A +A Sbjct: 401 KGFNDRYGHVAGDECLKAVSRQLELSAKRSGDLAARYGGEELAIILPNTALEGAMRVAEE 460 Query: 421 VVQAVRGLEIAHERSPMGVVTISVGVASLASGKSLQIEPRELIDSADGALYRAKEEGRDR 480 +++ +RGL+IAHE S G VT+S+G AS+ G+ P +L+++AD ALYRAK GR+R Sbjct: 461 LLKCIRGLDIAHESSQFGHVTVSIGAASM-QGRHGLASPLDLVEAADQALYRAKAAGRNR 519 Query: 481 A 481 A Sbjct: 520 A 520 >ref|YP_003279052.1| diguanylate cyclase [Comamonas testosteroni CNB-2] gb|ACY33756.1| diguanylate cyclase [Comamonas testosteroni CNB-2] Length = 522 Score = 318 bits (815), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 183/481 (38%), Positives = 270/481 (56%), Gaps = 3/481 (0%) Query: 2 ILLLEAWTAWRAREVALSESTTDASNVALALIQHAEQSIKEADIVLETVQEHLDHEDRSA 61 +L+ +W W A + LSE T+ N+A L +AE ++ ++L + E L+ E + Sbjct: 42 VLVATSWQIWSAHQRTLSEIDTNNRNLAQTLNTYAEGVFTQSSMLLLGMLERLEVEGTTP 101 Query: 62 SARIRTHDFMIRSVASLPQLAQLTVVDEQGRTVASSQQRMVQTGSPVQDDYFQYHQHRRS 121 R + R L QL +L V+D G+ + SS+ ++ + +F YH+ S Sbjct: 102 EHLARMQQLVGRQEHLLSQLNELLVIDASGKWLMSSRGGFLEGSNSADRRFFSYHRDNPS 161 Query: 122 DRPFIGQPMRSHVTGQRTLTVSRRINHVDGSFAGVIVAEIDLAYFQRYYEQFNIGPHGVI 181 FIG P+RS TG+ LT+SRR + +G FAGVIV + + F + + ++G G I Sbjct: 162 HEIFIGAPIRSRSTGEWVLTISRRFENQEGDFAGVIVVVLGIENFLHLFGKIDVGEQGSI 221 Query: 182 LFGLTGGSLILRRPLLADMTDRSPAMSEALRKHMEQARRGSFAMRSERDGVERISCFQQG 241 F T G L++R P R + S ++ + G+ + S DG ER+ F+ Sbjct: 222 GFATTSGQLLVRYPFREQDLGRDFSRSPNFLRYYSNLKSGTASFESGIDGTERLYAFRSN 281 Query: 242 EAYPIFTVVALAKDDILEDWSRHVWVRGIGVVL-LLAVICFGGKRLVVLVAGRERAEAQA 300 + YP+FTVVA + + L+ W + GVVL LLAV+ G RL++L+ R +AE Sbjct: 282 DRYPVFTVVARGRYEALQAWRSQALLTA-GVVLGLLAVVTLIGWRLILLIRQRAQAETSL 340 Query: 301 IAARQELESLYRTLEAQSQKDGLTDVFNRRYFDAALAAELARLNRTGESLSLMMIDVDHF 360 +A R++L LE + +D LT + NRR FD L E+ R R G LSL++ID+DHF Sbjct: 341 MAVREKLLDANLELERLATQDSLTGLANRRRFDEVLQLEVRRAARDGTVLSLLLIDLDHF 400 Query: 361 KQFNDTYGHAAGDVCLRQVAAAISTVARRQGDIVARYGGEEFAVILPNCHPGSAQGLAHR 420 K FND YGH AGD CL+ V+ + A+R GD+ ARYGGEE A+ILPN A +A Sbjct: 401 KGFNDRYGHVAGDECLKAVSRQLELSAKRSGDLAARYGGEELAIILPNTALEGAMRVAEE 460 Query: 421 VVQAVRGLEIAHERSPMGVVTISVGVASLASGKSLQIEPRELIDSADGALYRAKEEGRDR 480 +++ +RGL+IAHE S G VT+SVG AS+ G+ P +L+++AD ALYRAK GR+R Sbjct: 461 LLKCIRGLDIAHESSQFGHVTVSVGAASM-QGRHGLASPLDLVEAADQALYRAKAAGRNR 519 Query: 481 A 481 A Sbjct: 520 A 520 >ref|ZP_06190751.1| diguanylate cyclase [Serratia odorifera 4Rx13] gb|EFA16257.1| diguanylate cyclase [Serratia odorifera 4Rx13] Length = 520 Score = 306 bits (785), Expect = 5e-81, Method: Compositional matrix adjust. Identities = 172/482 (35%), Positives = 268/482 (55%), Gaps = 1/482 (0%) Query: 1 VILLLEAWTAWRAREVALSESTTDASNVALALIQHAEQSIKEADIVLETVQEHLDHEDRS 60 ++L W W A + L + +++N+A +L QHA+ + + D L + E + + Sbjct: 34 TLILFNVWQIWNAHQRDLKSAEYESANLARSLAQHADDTFLQVDSTLSDLTERIQTDGLG 93 Query: 61 ASARIRTHDFMIRSVASLPQLAQLTVVDEQGRTVASSQQRMVQTGSPVQDDYFQYHQHRR 120 ++R M V +LPQL L + D G + +S R VQ + +YF+YH Sbjct: 94 QPQQLRLQKLMQGQVGNLPQLHGLFIYDSHGSWIVTSSGRFVQGANNADREYFKYHLEHN 153 Query: 121 SDRPFIGQPMRSHVTGQRTLTVSRRINHVDGSFAGVIVAEIDLAYFQRYYEQFNIGPHGV 180 S+ +IG+ +RS TG + VSRR+NH DGSFAGV++A + + YF+++Y+ F + Sbjct: 154 SNAIYIGKVVRSRSTGDLIIPVSRRLNHPDGSFAGVVLATLYVDYFRQFYDTFALNSDAA 213 Query: 181 ILFGLTGGSLILRRPLLADMTDRSPAMSEALRKHMEQARRGSFAMRSERDGVERISCFQQ 240 + L G+++ RRP A ++ + R+ + + G+ + S D VERI + + Sbjct: 214 LSLLLADGTILYRRPYSAASIGKNISQGVLFREILPHSEFGNATITSLYDKVERIYGYSR 273 Query: 241 GEAYPIFTVVALAKDDILEDWSRHVWVRGIGVVLLLAVICFGGKRLVVLVAGRERAEAQA 300 YP+ L+K+D L DW + G LLA++ G L+ + R EA+ Sbjct: 274 VNRYPLVITAGLSKEDALADWRNDSGLFVAGGATLLAILLALGLVLMRQINHSVRTEAEL 333 Query: 301 IAARQELESLYRTLEAQSQKDGLTDVFNRRYFDAALAAELARLNRTGESLSLMMIDVDHF 360 + R +L S+ LE + DGLT + NRR FD AL ELAR R S++L+M+D+D+F Sbjct: 334 MRTRDQLTSINLRLEELALLDGLTGLANRRQFDIALKNELARAARNYRSVALLMLDIDYF 393 Query: 361 KQFNDTYGHAAGDVCLRQVAAAISTVARRQGDIVARYGGEEFAVILPNCHPGSAQGLAHR 420 KQ+ND YGH AGD CL+Q+ + +A R DI+ARYGGEE ++ILP+ A A R Sbjct: 394 KQYNDIYGHVAGDQCLQQIGQMLKGLASRSNDIMARYGGEEMSIILPDTDAQGALIFADR 453 Query: 421 VVQAVRGLEIAHERSPMGVVTISVGVASLASGKSLQIEPRELIDSADGALYRAKEEGRDR 480 V+QAVR L+I H+ +P GV+T+S+G+ + P I+ AD ALY+AK+EG++R Sbjct: 454 VMQAVRELKIPHQGNPHGVITLSIGICAKVP-HMYNDTPIGFINMADSALYQAKKEGKNR 512 Query: 481 AV 482 V Sbjct: 513 IV 514 >ref|YP_004353992.1| diguanylate cyclase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gb|AEA68988.1| putative diguanylate cyclase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 522 Score = 305 bits (782), Expect = 9e-81, Method: Compositional matrix adjust. Identities = 164/480 (34%), Positives = 263/480 (54%), Gaps = 10/480 (2%) Query: 2 ILLLEAWTAWRAREVALSESTTDASNVALALIQHAEQSIKEADIVLETVQEHLDHEDRSA 61 L +E W WR A S + +N+A A QHAE +I++ D+V + E ++ + Sbjct: 43 FLAVEGWRTWRDYRAAFSSAQDSVTNLARATAQHAEDTIRQVDVVTAALSERVEGDGLQN 102 Query: 62 SARIRTHDFMIRSVASLPQLAQLTVVDEQGRTVASSQQRMVQTGSPVQDDYFQYHQHRRS 121 R H +++ A +PQL L + G+ + + ++ + +T + DYFQYH+ Sbjct: 103 MDVARIHKLLVQQAAIMPQLHGLFIYGPDGQWLVTDKEVIPETANNADRDYFQYHRTHED 162 Query: 122 DRPFIGQPMRSHVTGQRTLTVSRRINHVDGSFAGVIVAEIDLAYFQRYYEQFNIGPHGVI 181 IG+ ++S T + VSRR+N+ DGSFAGV++ + ++YF YY F I G + Sbjct: 163 RGVRIGEVIKSRSTNDLIIPVSRRLNNPDGSFAGVLLGTVKVSYFVDYYGDFKIDDKGAL 222 Query: 182 LFGLTGGSLILRRPLLADMTDRSPAMSEALRKHMEQARRGSFAMRSERDGVERISCFQQG 241 + G++++RRP + + +S S + ++ + +G+ R+ D ER+ F+ Sbjct: 223 VLATRSGTILVRRPFVESVIGKSLVNSVIFKNYLPTSNQGTAEARAVVDDTERLYGFRAL 282 Query: 242 EAYPIFTVVALAKDDILEDWSRHVWVRGIGVVLLLAVICFGGKRLVVLVAGRERAEAQAI 301 YP+ L+++ I+ W R ++ VL+ ++ G L+VL R R + Sbjct: 283 TTYPLVVEAGLSRESIIAPWRRDLF--KTSFVLIFLIMILVGFGLIVLSQLRHR-----M 335 Query: 302 AARQELESLYRTLEAQSQKDGLTDVFNRRYFDAALAAELARLNRTGESLSLMMIDVDHFK 361 +++ S ++T+ + D LT + NRR D ALA E+ R G SL+L+M+DVD+FK Sbjct: 336 TMEKQIRSAHQTMRDMALTDSLTGLGNRRRLDIALADEIRLAKRQGSSLALIMLDVDYFK 395 Query: 362 QFNDTYGHAAGDVCLRQVAAAISTVARRQGDIVARYGGEEFAVILPNCHPGSAQGLAHRV 421 +FND YGHAAGD CLR +A A+ +R GD+ RYGGEEF V+LPN A +A ++ Sbjct: 396 RFNDRYGHAAGDDCLRAIATAVRQTIKRPGDLAVRYGGEEFTVLLPNTDSTGAAKVAQQI 455 Query: 422 VQAVRGLEIAHERSPMGVVTISVGV-ASLASGKSLQIEPRELIDSADGALYRAKEEGRDR 480 ++AVR + I H P+G+VTIS G+ S SG+ + P LI +AD LY AK GR+R Sbjct: 456 LEAVRAMNIEHGDHPLGIVTISAGITTSQPSGE--DVTPAMLIKAADAFLYLAKNTGRNR 513 >ref|YP_004501568.1| diguanylate cyclase [Serratia sp. AS12] ref|YP_004506520.1| diguanylate cyclase [Serratia sp. AS9] gb|AEF46259.1| diguanylate cyclase [Serratia sp. AS9] gb|AEF51211.1| diguanylate cyclase [Serratia sp. AS12] gb|AEG28919.1| diguanylate cyclase [Serratia sp. AS13] Length = 520 Score = 304 bits (778), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 171/482 (35%), Positives = 267/482 (55%), Gaps = 1/482 (0%) Query: 1 VILLLEAWTAWRAREVALSESTTDASNVALALIQHAEQSIKEADIVLETVQEHLDHEDRS 60 ++L W W A + L + +++N+A +L QHA+ + + D L + E + + Sbjct: 34 TLILFNVWQIWNAHQRDLKSAEYESANLARSLAQHADDTFLQVDSTLSDLTERIQTDGLG 93 Query: 61 ASARIRTHDFMIRSVASLPQLAQLTVVDEQGRTVASSQQRMVQTGSPVQDDYFQYHQHRR 120 ++R M V +LPQL L + D G + +S + VQ + +YF+YH Sbjct: 94 QPQQLRLQKLMQGQVGNLPQLHGLFIYDAHGSWIVTSSGKFVQGANNADREYFKYHLEHN 153 Query: 121 SDRPFIGQPMRSHVTGQRTLTVSRRINHVDGSFAGVIVAEIDLAYFQRYYEQFNIGPHGV 180 S+ +IG+ +RS TG + VSRR+NH DGSFAGV++A + + YF+++Y+ F + Sbjct: 154 SNAIYIGKVVRSRSTGDLIIPVSRRLNHPDGSFAGVVLATLYVDYFRQFYDTFALNSDAA 213 Query: 181 ILFGLTGGSLILRRPLLADMTDRSPAMSEALRKHMEQARRGSFAMRSERDGVERISCFQQ 240 + L G+++ RRP A ++ + R+ + + G+ + S D VERI + + Sbjct: 214 LSLLLADGTILYRRPYSAASIGKNISQGVLFREILPHSEFGNATITSLYDKVERIYGYSR 273 Query: 241 GEAYPIFTVVALAKDDILEDWSRHVWVRGIGVVLLLAVICFGGKRLVVLVAGRERAEAQA 300 YP+ L+K+D L DW + G LLA++ G L+ + R EA+ Sbjct: 274 VSRYPLVITAGLSKEDALADWRNDSGLFVAGGATLLAILLALGLVLMRQINHSVRTEAEL 333 Query: 301 IAARQELESLYRTLEAQSQKDGLTDVFNRRYFDAALAAELARLNRTGESLSLMMIDVDHF 360 + R +L S+ LE + DGLT + NRR FD AL ELAR R S++L+M+D+D+F Sbjct: 334 MRTRDQLTSINLRLEELALLDGLTGLANRRQFDIALKNELARAARNYRSVALLMLDIDYF 393 Query: 361 KQFNDTYGHAAGDVCLRQVAAAISTVARRQGDIVARYGGEEFAVILPNCHPGSAQGLAHR 420 KQFND YGH AGD CL+Q+ + +A R DI+ARYGGEE ++ILP+ A A R Sbjct: 394 KQFNDIYGHVAGDQCLQQIGQMLKGLASRSNDIMARYGGEEMSIILPDTDAQGALIFAER 453 Query: 421 VVQAVRGLEIAHERSPMGVVTISVGVASLASGKSLQIEPRELIDSADGALYRAKEEGRDR 480 V+QAVR L+I H+ +P V+T+S+G+ + P I+ AD ALY+AK+EG++R Sbjct: 454 VMQAVRELKIPHQGNPHDVITLSIGICAKVP-HMYNDTPIGFINMADSALYQAKKEGKNR 512 Query: 481 AV 482 V Sbjct: 513 IV 514