BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0073.p (278 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774954.1| dipeptide/oligopeptide/nickel ABC transporte... 511 e-143 ref|YP_546496.1| binding-protein-dependent transport systems inn... 258 1e-66 ref|YP_002943978.1| binding-protein-dependent transport systems ... 250 2e-64 ref|YP_004156406.1| binding-protein-dependent transport systems ... 239 4e-61 ref|ZP_01056056.1| ABC transporter, permease protein [Roseobacte... 238 7e-61 gb|AEA80463.1| Dipeptide transport system permease protein DppC ... 229 5e-58 ref|ZP_04717415.1| binding-protein-dependent transport systems i... 229 5e-58 gb|ADT86667.1| ABC transporter, permease protein [Vibrio furniss... 228 6e-58 ref|ZP_05876986.1| dipeptide transport system permease protein D... 227 1e-57 ref|ZP_08731132.1| dipeptide transport system permease protein D... 227 1e-57 >ref|YP_003774954.1| dipeptide/oligopeptide/nickel ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ63046.1| ABC-type dipeptide/oligopeptide/nickel transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 278 Score = 511 bits (1317), Expect = e-143, Method: Compositional matrix adjust. Identities = 277/278 (99%), Positives = 277/278 (99%) Query: 1 MSTLSSSLPLLEQAGPRRWSAGQWSGLVLLLLVAGFALLGPLVIDTDPARQQLARYLETP 60 MSTLSSSLPLLEQAGPRRWSAGQWSGLVLLLLVAGFALLGPLVIDTDPARQQLARYLETP Sbjct: 1 MSTLSSSLPLLEQAGPRRWSAGQWSGLVLLLLVAGFALLGPLVIDTDPARQQLARYLETP 60 Query: 61 SLAEPLGFDQLGRSMLARLAHGARLSLSLALLSVLSAAIPGSLIGLLAAWCGGWTERVLA 120 SLAEPLGFDQLGRSMLARLAHGARLSLSLALLSVLSAAIPGSLIGLLAAWCGGWTERVLA Sbjct: 61 SLAEPLGFDQLGRSMLARLAHGARLSLSLALLSVLSAAIPGSLIGLLAAWCGGWTERVLA 120 Query: 121 ALADAVLALPGLLLVLLLAAFAPGGFWPLYVGISLALWVEYFRVVRAASRILLASPQVEA 180 ALADAVLALPGLLLVLLLAAFAPGGFWPLYVGISLALWVEYFRVVRAASRILLASPQVEA Sbjct: 121 ALADAVLALPGLLLVLLLAAFAPGGFWPLYVGISLALWVEYFRVVRAASRILLASPQVEA 180 Query: 181 SRLLGFGALYIVRCHLLPALLPRLLTLVRFGLAGAVLAMSALGFVGVGLQPPTPELGVMM 240 SRLLGFGALYIVRCHLLPALLPRLLTLVRFGLAGAVLAMSALGFVGVGLQPPTPELGVMM Sbjct: 181 SRLLGFGALYIVRCHLLPALLPRLLTLVRFGLAGAVLAMSALGFVGVGLQPPTPELGVMM 240 Query: 241 IELLPYYREAPWLVASPVLVLFFGLLGLLLLSSQGEAA 278 IELLPYYREAPWLVASPVLVLF GLLGLLLLSSQGEAA Sbjct: 241 IELLPYYREAPWLVASPVLVLFLGLLGLLLLSSQGEAA 278 >ref|YP_546496.1| binding-protein-dependent transport systems inner membrane component [Methylobacillus flagellatus KT] gb|ABE50655.1| binding-protein-dependent transport systems inner membrane component [Methylobacillus flagellatus KT] Length = 266 Score = 258 bits (658), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 157/252 (62%), Positives = 194/252 (76%), Gaps = 1/252 (0%) Query: 25 SGLVLLLLVAGFALLGPLVIDTDPARQQLARYLETPSLAEPLGFDQLGRSMLARLAHGAR 84 SG +LL L+ ALLGP+++ TDP Q L R L +PSLA+PLG D LGRSMLARL H + Sbjct: 14 SGAILLTLIVLTALLGPILV-TDPVSQDLGRVLRSPSLAQPLGTDHLGRSMLARLVHALQ 72 Query: 85 LSLSLALLSVLSAAIPGSLIGLLAAWCGGWTERVLAALADAVLALPGLLLVLLLAAFAPG 144 LS SLA+LSVLSAAI G +GLLAAW GG E VL ++ADAV+ LP LL+VLL +AFA G Sbjct: 73 LSFSLAVLSVLSAAIIGISLGLLAAWRGGIIEAVLTSIADAVMTLPVLLVVLLFSAFAQG 132 Query: 145 GFWPLYVGISLALWVEYFRVVRAASRILLASPQVEASRLLGFGALYIVRCHLLPALLPRL 204 FW LY+G+S ALWVEYFRV RA+ + L S VE++R+LGF LY++R HLLPAL P + Sbjct: 133 EFWSLYIGLSFALWVEYFRVSRASIKATLVSAAVESARMLGFDRLYLLRRHLLPALAPVV 192 Query: 205 LTLVRFGLAGAVLAMSALGFVGVGLQPPTPELGVMMIELLPYYREAPWLVASPVLVLFFG 264 +TL+ FG++ A+LA++ALGFVGVGL+PPTPELGVMMIEL PYY EAPWL+ASPV+ L Sbjct: 193 VTLMLFGISSAILALAALGFVGVGLRPPTPELGVMMIELFPYYEEAPWLIASPVVTLGLI 252 Query: 265 LLGLLLLSSQGE 276 +L L LL + E Sbjct: 253 MLALALLGGRKE 264 >ref|YP_002943978.1| binding-protein-dependent transport systems inner membrane component [Variovorax paradoxus S110] gb|ACS18712.1| binding-protein-dependent transport systems inner membrane component [Variovorax paradoxus S110] Length = 278 Score = 250 bits (638), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 168/272 (61%), Positives = 208/272 (76%) Query: 7 SLPLLEQAGPRRWSAGQWSGLVLLLLVAGFALLGPLVIDTDPARQQLARYLETPSLAEPL 66 +P L RR + +GL +L LVA F+L GP VI DPARQ LA L P A L Sbjct: 7 DIPALTGRESRREVGRRRTGLSILALVAVFSLFGPAVIGIDPARQTLADTLLPPGAAHWL 66 Query: 67 GFDQLGRSMLARLAHGARLSLSLALLSVLSAAIPGSLIGLLAAWCGGWTERVLAALADAV 126 G D LGRS+LARLAH A+LSL LALL+ ++AAIPG L+G++A+W GG ER L LADAV Sbjct: 67 GTDVLGRSVLARLAHAAQLSLGLALLAAVTAAIPGVLLGVVASWRGGRIERALVMLADAV 126 Query: 127 LALPGLLLVLLLAAFAPGGFWPLYVGISLALWVEYFRVVRAASRILLASPQVEASRLLGF 186 L++PGLLLVLL AA APG +W LY+G+SL+LWVEYFRV RAASR +LA V+ASRLLGF Sbjct: 127 LSVPGLLLVLLFAALAPGRYWALYIGLSLSLWVEYFRVARAASRPVLAGDAVQASRLLGF 186 Query: 187 GALYIVRCHLLPALLPRLLTLVRFGLAGAVLAMSALGFVGVGLQPPTPELGVMMIELLPY 246 G+ Y++R HLLPAL P L TL+ F A AVLA++ALGF+GVGLQPPTPELG+MMIE LP+ Sbjct: 187 GSGYVLRRHLLPALAPVLGTLLAFSAAQAVLALAALGFIGVGLQPPTPELGLMMIEFLPH 246 Query: 247 YREAPWLVASPVLVLFFGLLGLLLLSSQGEAA 278 Y EAPWL+A+PV +L F +LG++LL+++GE A Sbjct: 247 YEEAPWLIAAPVALLMFLVLGMMLLAAEGETA 278 >ref|YP_004156406.1| binding-protein-dependent transport systems inner membrane component [Variovorax paradoxus EPS] gb|ADU38295.1| binding-protein-dependent transport systems inner membrane component [Variovorax paradoxus EPS] Length = 280 Score = 239 bits (610), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 161/251 (64%), Positives = 195/251 (77%) Query: 26 GLVLLLLVAGFALLGPLVIDTDPARQQLARYLETPSLAEPLGFDQLGRSMLARLAHGARL 85 GLV+L LV+ F+L GP +I DPARQ LA L P A LG D LGRS+LARLAH ARL Sbjct: 28 GLVILALVSAFSLFGPSLIGIDPARQTLANTLLPPGAAHWLGTDVLGRSVLARLAHAARL 87 Query: 86 SLSLALLSVLSAAIPGSLIGLLAAWCGGWTERVLAALADAVLALPGLLLVLLLAAFAPGG 145 SL LALL+ L+AA+PG L+G+ A+W GG ER L LADAVL++PGLLLVLL AA APG Sbjct: 88 SLGLALLAALTAAVPGVLLGVAASWRGGRIERALVMLADAVLSVPGLLLVLLFAALAPGQ 147 Query: 146 FWPLYVGISLALWVEYFRVVRAASRILLASPQVEASRLLGFGALYIVRCHLLPALLPRLL 205 W LY+G+SL+LWVEYFRV RAASR +LAS V+ASRLLGFG Y++R HLLPAL P L Sbjct: 148 HWALYIGLSLSLWVEYFRVCRAASRQVLASDAVQASRLLGFGTGYVLRRHLLPALAPVLG 207 Query: 206 TLVRFGLAGAVLAMSALGFVGVGLQPPTPELGVMMIELLPYYREAPWLVASPVLVLFFGL 265 TL+ F A AVLA++ALGF+GVGLQPPTPELG+MM E LP+Y EAPWL+A+PV +L + Sbjct: 208 TLLAFSAAQAVLALAALGFIGVGLQPPTPELGLMMTEFLPHYEEAPWLIAAPVALLMAVV 267 Query: 266 LGLLLLSSQGE 276 LG++L++ GE Sbjct: 268 LGMMLVAGDGE 278 >ref|ZP_01056056.1| ABC transporter, permease protein [Roseobacter sp. MED193] gb|EAQ46012.1| ABC transporter, permease protein [Roseobacter sp. MED193] Length = 278 Score = 238 bits (607), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 149/245 (60%), Positives = 180/245 (73%), Gaps = 2/245 (0%) Query: 26 GLVLLLLVAGFALLGPLVIDTDPARQQLARYLETPSLAEPLGFDQLGRSMLARLAHGARL 85 GLV L +A A+ GP +I DPA+Q L L PSL PLG D LGR M ARL GA+L Sbjct: 28 GLVTGLAIA--AIGGPDLIGVDPAKQSLLATLSPPSLTHPLGTDHLGRDMAARLLSGAQL 85 Query: 86 SLSLALLSVLSAAIPGSLIGLLAAWCGGWTERVLAALADAVLALPGLLLVLLLAAFAPGG 145 SLSLALLSVL+A +PG+++G+ +AW GGWT+R+L A ADAVLA+PGLLLVL+LAA APG Sbjct: 86 SLSLALLSVLTAGLPGTILGVTSAWFGGWTDRLLGAFADAVLAMPGLLLVLMLAAIAPGS 145 Query: 146 FWPLYVGISLALWVEYFRVVRAASRILLASPQVEASRLLGFGALYIVRCHLLPALLPRLL 205 +W LY GISL LWVEYFR R +RI+LA P VEASRLLG G +VR HL+P + P LL Sbjct: 146 WWALYAGISLTLWVEYFRYTRQRARIILADPSVEASRLLGLGPWLLVRRHLIPEIGPGLL 205 Query: 206 TLVRFGLAGAVLAMSALGFVGVGLQPPTPELGVMMIELLPYYREAPWLVASPVLVLFFGL 265 T+ FG A AV A++ALGFV VG++PPT E GVMM ELLPY+REAP+L+ PV L + Sbjct: 206 TIAAFGAATAVTAVAALGFVNVGVRPPTAEWGVMMTELLPYWREAPFLILQPVACLVITV 265 Query: 266 LGLLL 270 L L L Sbjct: 266 LALHL 270 >gb|AEA80463.1| Dipeptide transport system permease protein DppC [Vibrio cholerae LMA3894-4] Length = 263 Score = 229 bits (583), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 124/254 (48%), Positives = 169/254 (66%) Query: 20 SAGQWSGLVLLLLVAGFALLGPLVIDTDPARQQLARYLETPSLAEPLGFDQLGRSMLARL 79 S QW G+ LL+L+ F L+ L+ DPA+Q L R L PS EPLG D GRS ARL Sbjct: 6 SKPQWLGVSLLILLVMFVLIEYLLYSGDPAKQDLNRALAAPSWGEPLGTDHYGRSNFARL 65 Query: 80 AHGARLSLSLALLSVLSAAIPGSLIGLLAAWCGGWTERVLAALADAVLALPGLLLVLLLA 139 + SL++A+ V S+A+ G + G++AAW GW +R + L + +LA+PGL+LVLL Sbjct: 66 SSAIATSLTMAVACVSSSALLGLVTGVVAAWKRGWWDRGFSWLLNMLLAMPGLILVLLFG 125 Query: 140 AFAPGGFWPLYVGISLALWVEYFRVVRAASRILLASPQVEASRLLGFGALYIVRCHLLPA 199 A PG F+ LY+ I+L LWVE+FRVVR+ + LL PQ+EASRL GF A Y+ R HL P Sbjct: 126 AMVPGSFFILYLAIALMLWVEFFRVVRSKTLSLLEQPQIEASRLYGFNAWYLFRRHLWPE 185 Query: 200 LLPRLLTLVRFGLAGAVLAMSALGFVGVGLQPPTPELGVMMIELLPYYREAPWLVASPVL 259 L L TL FG A+LA++++GF+ VGL+PP ELG+MM+EL YY +APW++A P+L Sbjct: 186 LREDLFTLACFGAGNAILALASIGFLYVGLKPPQAELGMMMVELFRYYHQAPWVLAQPIL 245 Query: 260 VLFFGLLGLLLLSS 273 V+F +L LL+ Sbjct: 246 VVFILVLSFQLLAK 259 >ref|ZP_04717415.1| binding-protein-dependent transport systems inner membrane component [Alteromonas macleodii ATCC 27126] Length = 289 Score = 229 bits (583), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 117/238 (49%), Positives = 166/238 (69%) Query: 41 PLVIDTDPARQQLARYLETPSLAEPLGFDQLGRSMLARLAHGARLSLSLALLSVLSAAIP 100 P+++ T+ +Q L + LE PS LG DQ GR MLAR++ G R+SLSLA L VLS++I Sbjct: 28 PVLLGTNGNQQNLKQVLEAPSAQHWLGTDQFGRDMLARISEGLRISLSLAALCVLSSSII 87 Query: 101 GSLIGLLAAWCGGWTERVLAALADAVLALPGLLLVLLLAAFAPGGFWPLYVGISLALWVE 160 G L G++AAWC GW + L +A+ +LALPGL+L+LL AA PG F LY+ ISL L VE Sbjct: 88 GVLTGVIAAWCRGWVDTTLNFIANTILALPGLVLILLFAALVPGSFIMLYLAISLVLAVE 147 Query: 161 YFRVVRAASRILLASPQVEASRLLGFGALYIVRCHLLPALLPRLLTLVRFGLAGAVLAMS 220 YFR+VRA + ++ P +E S L+GF Y+ H+ PA+ +L+L FG + +++AM+ Sbjct: 148 YFRLVRAITLPVVTGPALENSALMGFPKRYLFSKHIWPAIRQDVLSLAAFGASSSIIAMA 207 Query: 221 ALGFVGVGLQPPTPELGVMMIELLPYYREAPWLVASPVLVLFFGLLGLLLLSSQGEAA 278 ++GFV VGL+PP+PELG+M++EL PYY EAPWL+A P+ LF +LG LLS++ + Sbjct: 208 SVGFVYVGLKPPSPELGLMIVELFPYYHEAPWLLAQPISTLFVLVLGFHLLSAKSDKT 265 >gb|ADT86667.1| ABC transporter, permease protein [Vibrio furnissii NCTC 11218] Length = 262 Score = 228 bits (582), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 124/261 (47%), Positives = 174/261 (66%) Query: 17 RRWSAGQWSGLVLLLLVAGFALLGPLVIDTDPARQQLARYLETPSLAEPLGFDQLGRSML 76 +++S QW G+ +L + FAL L+ DPA+Q LA+ +PS EPLG D GRS Sbjct: 2 KQFSRSQWIGMSILAALVVFALFEALIYRGDPAQQSLAQAFASPSWQEPLGRDHYGRSNY 61 Query: 77 ARLAHGARLSLSLALLSVLSAAIPGSLIGLLAAWCGGWTERVLAALADAVLALPGLLLVL 136 ARLA SL +A++SV+++A G L G+ AAW GGW ++ L+ L + +LA+PGL+LVL Sbjct: 62 ARLASAVSTSLLMAVVSVVTSAALGLLAGVAAAWKGGWWDKSLSWLVNMLLAMPGLILVL 121 Query: 137 LLAAFAPGGFWPLYVGISLALWVEYFRVVRAASRILLASPQVEASRLLGFGALYIVRCHL 196 L A PG F LY+ ISL LWVEYFRVVR+ + LL SP++EASRL GFG Y + HL Sbjct: 122 LFGAMVPGSFLILYLAISLMLWVEYFRVVRSRTLSLLRSPEIEASRLYGFGVWYQFKRHL 181 Query: 197 LPALLPRLLTLVRFGLAGAVLAMSALGFVGVGLQPPTPELGVMMIELLPYYREAPWLVAS 256 P L L TL FG A+LA++++GF+ VGL+PP ELG+MM+EL YY++APW++ Sbjct: 182 WPELRTDLFTLGCFGAGNAILALASIGFLYVGLKPPAAELGLMMVELFRYYQQAPWVLVQ 241 Query: 257 PVLVLFFGLLGLLLLSSQGEA 277 P++V+F ++ LL+ +A Sbjct: 242 PIVVVFLLVMSFHLLARGKQA 262 >ref|ZP_05876986.1| dipeptide transport system permease protein DppC [Vibrio furnissii CIP 102972] gb|EEX41267.1| dipeptide transport system permease protein DppC [Vibrio furnissii CIP 102972] Length = 262 Score = 227 bits (579), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 124/261 (47%), Positives = 173/261 (66%) Query: 17 RRWSAGQWSGLVLLLLVAGFALLGPLVIDTDPARQQLARYLETPSLAEPLGFDQLGRSML 76 ++ S QW G+ +L + FAL L+ DPA+Q LA+ +PS EPLG D GRS Sbjct: 2 KQLSRSQWVGMSILAALVVFALFEALIYRGDPAQQSLAQAFASPSWQEPLGRDHYGRSNY 61 Query: 77 ARLAHGARLSLSLALLSVLSAAIPGSLIGLLAAWCGGWTERVLAALADAVLALPGLLLVL 136 ARLA SL +A++SV+++A G L G+ AAW GGW ++ L+ L + +LA+PGL+LVL Sbjct: 62 ARLASAVSTSLLMAVVSVVTSAALGLLAGVTAAWKGGWWDKSLSWLVNMLLAMPGLILVL 121 Query: 137 LLAAFAPGGFWPLYVGISLALWVEYFRVVRAASRILLASPQVEASRLLGFGALYIVRCHL 196 L A PG F LY+ ISL LWVEYFRVVR+ + LL SP++EASRL GFG Y + HL Sbjct: 122 LFGAMVPGSFLILYLAISLMLWVEYFRVVRSRTLSLLRSPEIEASRLYGFGVWYQFKRHL 181 Query: 197 LPALLPRLLTLVRFGLAGAVLAMSALGFVGVGLQPPTPELGVMMIELLPYYREAPWLVAS 256 P L L TL FG A+LA++++GF+ VGL+PP ELG+MM+EL YY++APW++ Sbjct: 182 WPELRTDLFTLGCFGAGNAILALASIGFLYVGLKPPAAELGLMMVELFRYYQQAPWVLVQ 241 Query: 257 PVLVLFFGLLGLLLLSSQGEA 277 P++V+F ++ LL+ +A Sbjct: 242 PIVVVFLLVMSFHLLARGKQA 262 >ref|ZP_08731132.1| dipeptide transport system permease protein DppC [Vibrio nigripulchritudo ATCC 27043] gb|EGU61250.1| dipeptide transport system permease protein DppC [Vibrio nigripulchritudo ATCC 27043] Length = 261 Score = 227 bits (579), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 119/258 (46%), Positives = 168/258 (65%) Query: 20 SAGQWSGLVLLLLVAGFALLGPLVIDTDPARQQLARYLETPSLAEPLGFDQLGRSMLARL 79 + Q GL L+ L+ F L L+ +DP +Q LA P AEPLG D GRS +ARL Sbjct: 4 TRSQQFGLFLISLLFVFVLAENLLFSSDPYKQNLALAFSAPDWAEPLGRDHYGRSNIARL 63 Query: 80 AHGARLSLSLALLSVLSAAIPGSLIGLLAAWCGGWTERVLAALADAVLALPGLLLVLLLA 139 + + S +A+ VL++AI G G+LA W GGW ++ L+ L + VLA+PGL+LVLL Sbjct: 64 SDAIQTSFFMAITCVLTSAIMGLAAGILAGWKGGWWDKTLSWLVNLVLAMPGLILVLLFG 123 Query: 140 AFAPGGFWPLYVGISLALWVEYFRVVRAASRILLASPQVEASRLLGFGALYIVRCHLLPA 199 A PG FW LY+ ISL LWVEYFRVVR+ L+ SP+VEAS+L GF YI + HL P Sbjct: 124 AIVPGSFWILYLAISLILWVEYFRVVRSRVMSLVVSPEVEASQLYGFSDFYIFKRHLWPE 183 Query: 200 LLPRLLTLVRFGLAGAVLAMSALGFVGVGLQPPTPELGVMMIELLPYYREAPWLVASPVL 259 L + TL FG ++L ++++GF+ VGL+PP ELG+MM+EL YY++APW++A P++ Sbjct: 184 LKRDIYTLACFGAGNSILTLASIGFLYVGLKPPEAELGLMMVELFRYYQQAPWVLAQPIV 243 Query: 260 VLFFGLLGLLLLSSQGEA 277 V+F ++G LL+ ++ Sbjct: 244 VVFLLVMGFHLLAKGDKS 261