BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0057.p (465 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774940.1| two component sensor histidine kinase [Herba... 933 0.0 ref|YP_004751843.1| periplasmic sensor signal transduction histi... 515 e-144 ref|ZP_08274599.1| Signal transduction histidine kinase [Oxaloba... 514 e-143 ref|YP_004791848.1| integral membrane sensor signal transduction... 311 2e-82 ref|ZP_05135727.1| periplasmic sensor signal transduction histid... 311 2e-82 ref|YP_001971380.1| putative two-component system, sensor histid... 309 6e-82 ref|YP_002027688.1| integral membrane sensor signal transduction... 306 4e-81 ref|YP_003523111.1| integral membrane sensor signal transduction... 289 7e-76 ref|YP_675448.1| periplasmic sensor signal transduction histidin... 279 9e-73 ref|ZP_05033958.1| ATPase, histidine kinase-, DNA gyrase B-, and... 271 2e-70 >ref|YP_003774940.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] gb|ADJ63032.1| two component sensor histidine kinase protein [Herbaspirillum seropedicae SmR1] Length = 465 Score = 933 bits (2411), Expect = 0.0, Method: Compositional matrix adjust. Identities = 461/465 (99%), Positives = 464/465 (99%) Query: 1 MKNFLGSIGNRIFFLLLGGIVVAVFATNWLAGNERRNTLRELRFQHLADRVEQIVQAVDN 60 MKNFLGSIGNRIFFLLLGGIVVAVFATNWLAGNERRNTLRELRFQHLADRVEQIVQAVDN Sbjct: 1 MKNFLGSIGNRIFFLLLGGIVVAVFATNWLAGNERRNTLRELRFQHLADRVEQIVQAVDN 60 Query: 61 IPPAQRPIVLQAASNFGFEARMVEDMNEAIGPNASPSPSTSPLTEMLQARLGEDRKIAVQ 120 IPPAQRPIVLQAASNFGFEARMVEDMN+AIGP+ASPSPSTSPLTEMLQARLGEDRKIAVQ Sbjct: 61 IPPAQRPIVLQAASNFGFEARMVEDMNDAIGPDASPSPSTSPLTEMLQARLGEDRKIAVQ 120 Query: 121 RESECPPLRTDDPRAPRRDTCRVIYISLHDQALMRLRLHQPGEPPALRARAGPGGPASLF 180 RESECPPLRTDD RAPRRDTCRVIYISLHDQALMRLRLHQPGEPPALRARAGPGGPASLF Sbjct: 121 RESECPPLRTDDARAPRRDTCRVIYISLHDQALMRLRLHQPGEPPALRARAGPGGPASLF 180 Query: 181 GLQYILLFLVLIAMLAWLVARMATRPIRQLAQAASRLGSDIDHAPLAETGPTEIRQAAHA 240 GLQYILLFLVLIAMLAWLVARMATRPIRQLAQAASRLGSDIDHAPLAETGPTEIRQAAHA Sbjct: 181 GLQYILLFLVLIAMLAWLVARMATRPIRQLAQAASRLGSDIDHAPLAETGPTEIRQAAHA 240 Query: 241 FNAMQARIRRQIQHRTHMLAAITHDLQTPLTRMRLRLEKVSDPGLQQKLIDDLGVMHGMV 300 FNAMQARIRRQIQHRTHMLAAITHDLQTPLTRMRLRLEKVSDPGLQQKLIDDLGVMHGMV Sbjct: 241 FNAMQARIRRQIQHRTHMLAAITHDLQTPLTRMRLRLEKVSDPGLQQKLIDDLGVMHGMV 300 Query: 301 REGLDLARSMDSSEKIQALDIDSLLDSVCADAADAGQDVALQGSTRAFVMAQPGALRRCL 360 REGLDLARSMDSSEKIQALDIDSLLDSVCADAADAGQDVALQGSTRAFVMAQPGALRRCL Sbjct: 301 REGLDLARSMDSSEKIQALDIDSLLDSVCADAADAGQDVALQGSTRAFVMAQPGALRRCL 360 Query: 361 TNLIDNACKYGKSARVSIALEQQKIAIRIRDQGPGIPESELEAVFEPFYRLEASRSRDTG 420 TNLIDNACKYGKSARVSIALEQQKIAIRIRDQGPGIPESELEAVFEPFYRLEASRSRDTG Sbjct: 361 TNLIDNACKYGKSARVSIALEQQKIAIRIRDQGPGIPESELEAVFEPFYRLEASRSRDTG 420 Query: 421 GTGLGLTIALNIAENHHGQLRLRNLAKGGLEVLLELPPMTPAKNR 465 GTGLGLTIALNIAENHHGQLRLRNLA+GGLEVLLELPPMTPAKNR Sbjct: 421 GTGLGLTIALNIAENHHGQLRLRNLAEGGLEVLLELPPMTPAKNR 465 >ref|YP_004751843.1| periplasmic sensor signal transduction histidine kinase [Collimonas fungivorans Ter331] gb|AEK61020.1| periplasmic sensor signal transduction histidine kinase [Collimonas fungivorans Ter331] Length = 455 Score = 515 bits (1327), Expect = e-144, Method: Compositional matrix adjust. Identities = 271/461 (58%), Positives = 328/461 (71%), Gaps = 14/461 (3%) Query: 1 MKNFLGSIGNRIFFLLLGGIVVAVFATNWLAGNERRNTLRELRFQHLADRVEQIVQAVDN 60 ++NF GS+ NR+F +LL GI+VA T+WLA NERR ++ +A+RVEQIV ++DN Sbjct: 4 VRNFFGSVANRVFLILLTGILVAAATTSWLAENERRKAFKDFYEFRIAERVEQIVFSLDN 63 Query: 61 IPPAQRPIVLQAASNFGFEARMVEDMNEAIGPNASPSPSTSPLTEMLQARLGEDRKIAVQ 120 + P R +VLQ + NFG EA MV+D A+ N S LT +L+ RLG+DR I V Sbjct: 64 VGPDMRSVVLQTSENFGLEASMVKDTENAVDDNPS-------LTLLLKKRLGDDRSILVD 116 Query: 121 RESECP--PLRTDDPRAPRRDTCRVIYISLHDQALMRLRLHQPGEPPALRARAGPGGPAS 178 ++S+C R D R P + C+V+Y+SL D L++L+L P A PG P Sbjct: 117 KQSDCKLHTRRNFDFRRP--EECQVVYVSLKDGTLLKLKLRMTRGPGAPPPARPPGMP-- 172 Query: 179 LFGLQYILLFLVLIAMLAWLVARMATRPIRQLAQAASRLGSDIDHAPLAETGPTEIRQAA 238 + Y LFL+LI LA+ VA+M RPI+ LA AA LG DID PL ETGPTE+RQAA Sbjct: 173 -YTSPYFALFLLLIGGLAYFVAKMTARPIKHLAVAAGELGRDIDRPPLDETGPTEVRQAA 231 Query: 239 HAFNAMQARIRRQIQHRTHMLAAITHDLQTPLTRMRLRLEKVSDPGLQQKLIDDLGVMHG 298 AFNAMQARI+RQIQHRTHMLAAITHDLQTPLTR+RLRLEKV + L++KL++DL VM Sbjct: 232 TAFNAMQARIKRQIQHRTHMLAAITHDLQTPLTRLRLRLEKVGEADLRRKLLEDLAVMQS 291 Query: 299 MVREGLDLARSMDSSEKIQALDIDSLLDSVCADAADAGQDVALQGSTRAFVMAQPGALRR 358 MVREGLDLARSMDS+E +Q LDIDSLLDSVCADA DA QDV L+G TRA +MAQP LRR Sbjct: 292 MVREGLDLARSMDSAEAMQKLDIDSLLDSVCADAVDARQDVTLEGRTRASIMAQPNTLRR 351 Query: 359 CLTNLIDNACKYGKSARVSIALEQQKIAIRIRDQGPGIPESELEAVFEPFYRLEASRSRD 418 CLTNL+DNA KYG+ AR+ +A E I IRIRD G GIP LE VF+PF+RLE SRSRD Sbjct: 352 CLTNLVDNATKYGRYARLLVAREGSDIVIRIRDGGTGIPAELLETVFDPFFRLETSRSRD 411 Query: 419 TGGTGLGLTIALNIAENHHGQLRLRNLAKGGLEVLLELPPM 459 TGGTGLGLTIA NIAENH L+LRN +GGLE L LP + Sbjct: 412 TGGTGLGLTIARNIAENHRATLQLRNHPEGGLEATLRLPAL 452 >ref|ZP_08274599.1| Signal transduction histidine kinase [Oxalobacteraceae bacterium IMCC9480] gb|EGF31932.1| Signal transduction histidine kinase [Oxalobacteraceae bacterium IMCC9480] Length = 457 Score = 514 bits (1324), Expect = e-143, Method: Compositional matrix adjust. Identities = 272/459 (59%), Positives = 330/459 (71%), Gaps = 14/459 (3%) Query: 1 MKNFLGSIGNRIFFLLLGGIVVAVFATNWLAGNERRNTLRELRFQHLADRVEQIVQAVDN 60 MKNFLGSI NR+F +LL GI+VA T LA ER + ++R H A+RV Q+V A+D Sbjct: 1 MKNFLGSIANRVFVILLAGILVATGVTAMLAEREREGAMNQMRLNHSAERVVQLVVALDQ 60 Query: 61 IPPAQRPIVLQAASNFGFEARMVEDMNEAIGPNASPSPSTSPLTEMLQARLGEDRKIAVQ 120 P RP++LQ A+NFG A M +D+ EA+G S L ++L++RLG R+I ++ Sbjct: 61 AAPEVRPVILQTATNFGVAASMADDL-EALGG------SDGALVDLLKSRLGLHRQIVLK 113 Query: 121 RESECPPLRTDDPRAPRRD--TCRVIYISLHDQALMRLRLHQPGEPPALRARAGPGGPAS 178 +++ C P PR R + C+ + + L D L+R++L G + + G P++ Sbjct: 114 QQTGCQPRLARLPRFERANPGDCQSVLVGLSDGQLLRVQLRPGGSTGGGKDKPPLGLPSA 173 Query: 179 LFGLQYILLFLVLIAMLAWLVARMATRPIRQLAQAASRLGSDIDHAPLAETGPTEIRQAA 238 Y+ LFL LI +LAWLVARM RPIRQLA+AA LGSD+D APL ETGPTEIRQAA Sbjct: 174 -----YLALFLTLIGLLAWLVARMTARPIRQLAEAAGALGSDLDRAPLPETGPTEIRQAA 228 Query: 239 HAFNAMQARIRRQIQHRTHMLAAITHDLQTPLTRMRLRLEKVSDPGLQQKLIDDLGVMHG 298 AFNAMQARIRRQ+QHRTHMLAAITHDLQTPLTR+RLRLEKV D L+ KLIDDLGVM Sbjct: 229 SAFNAMQARIRRQVQHRTHMLAAITHDLQTPLTRLRLRLEKVGDDELRTKLIDDLGVMQS 288 Query: 299 MVREGLDLARSMDSSEKIQALDIDSLLDSVCADAADAGQDVALQGSTRAFVMAQPGALRR 358 MVREGL+LARSMDS E +Q LD+DSL+DSVCADA DAGQDV L G + VMAQP ALRR Sbjct: 289 MVREGLELARSMDSQEPLQRLDLDSLIDSVCADATDAGQDVELLGPSGVRVMAQPNALRR 348 Query: 359 CLTNLIDNACKYGKSARVSIALEQQKIAIRIRDQGPGIPESELEAVFEPFYRLEASRSRD 418 CLTNL+DNA KYG+ ARVS+ EQ+++ IRIRD GPG+P +LEAVF+PF+RLE SRSRD Sbjct: 349 CLTNLLDNAIKYGRLARVSVVREQERVVIRIRDAGPGLPPDQLEAVFDPFFRLETSRSRD 408 Query: 419 TGGTGLGLTIALNIAENHHGQLRLRNLAKGGLEVLLELP 457 TGGTGLGLTIA NI E H G L L N A GGLE L LP Sbjct: 409 TGGTGLGLTIARNIIEAHGGTLVLANPAGGGLEATLALP 447 >ref|YP_004791848.1| integral membrane sensor signal transduction histidine kinase [Burkholderia sp. JV3] gb|AEM50622.1| integral membrane sensor signal transduction histidine kinase [Burkholderia sp. JV3] Length = 469 Score = 311 bits (796), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 190/475 (40%), Positives = 274/475 (57%), Gaps = 39/475 (8%) Query: 1 MKNFLGSIGNRIFFLLLGGIVVAVFATNWLAGNERRNTLRELRFQHLADRVEQIVQAVDN 60 +++FL S+ R+F +LL G+ VA LA ++R+ +ADR++ V +D Sbjct: 4 LRHFLSSMVGRLFVILLLGMAVAAIGATMLATSKRQQEFERQNLNRIADRLQGYVNLLDG 63 Query: 61 IPPAQRPIVLQAASNFGFEARMVEDMNEAIGPNASPSPSTSPLTEMLQARLGEDRKIAVQ 120 P + ++ + A+ P A + + L E+L+ R G + V Sbjct: 64 NPELRERLLAIGGPSV-----------RALQPGARLGRADTALMEVLEDRPGPVSRAHVH 112 Query: 121 RES--ECPPLRTD----------------DPRAPRRDTCRVIYISLHDQALMRLRLHQPG 162 S C P D DP A CR + ++L+D L++L L P Sbjct: 113 FTSFRSCIPKLQDLLPPPPPGHRRPPRERDP-AFIPPKCRAVDVTLNDGTLLKLALDSP- 170 Query: 163 EPPALRARAGPGGPASLFGLQYILLFLVLIAMLAWLVARMATRPIRQLAQAASRLGSDID 222 A A G A ++ L ++ IA+LA++VARMA+ P+++LA AA LG D+ Sbjct: 171 ------AVAHNGILA--VDPWFLTLLVLAIAVLAYIVARMASAPLQELAAAAEDLGDDLQ 222 Query: 223 HAPLAETGPTEIRQAAHAFNAMQARIRRQIQHRTHMLAAITHDLQTPLTRMRLRLEKVSD 282 PL GP E+++AA AFNAMQ R++R + RT MLAAITHDLQTPLTR+RLRLE VSD Sbjct: 223 RDPLPLRGPREVQRAAEAFNAMQHRLQRHLAERTQMLAAITHDLQTPLTRLRLRLENVSD 282 Query: 283 PGLQQKLIDDLGVMHGMVREGLDLARSMDSSEKIQALDIDSLLDSVCADAADAGQDVALQ 342 L+++LI DL M +VREGL+LARS +S+E+ ALD+DSLL+S+ D A+ G DV + Sbjct: 283 DALRERLIGDLAAMQALVREGLELARSAESAEQRAALDLDSLLESIVEDTAEGGADVVFE 342 Query: 343 GSTRAFVMAQPGALRRCLTNLIDNACKYGKSARVSIALEQQKIAIRIRDQGPGIPESELE 402 G + + +M +P A+ R +NL+DNA Y + ARV + I + + D GPG+ E +LE Sbjct: 343 GGSGSVLMLRPLAMHRLFSNLVDNAVMYAQRARVRVERSGGAITVVVADDGPGLAEEQLE 402 Query: 403 AVFEPFYRLEASRSRDTGGTGLGLTIALNIAENHHGQLRLRNLAKGGLEVLLELP 457 AVF+PF R+E SRSR+TGG GLGLTIA +AE +L LRN A+GGLE +++ P Sbjct: 403 AVFDPFVRVETSRSRETGGAGLGLTIARALAEKDGARLWLRNRAEGGLEAVVQWP 457 >ref|ZP_05135727.1| periplasmic sensor signal transduction histidine kinase [Stenotrophomonas sp. SKA14] gb|EED39788.1| periplasmic sensor signal transduction histidine kinase [Stenotrophomonas sp. SKA14] Length = 469 Score = 311 bits (796), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 192/474 (40%), Positives = 275/474 (58%), Gaps = 37/474 (7%) Query: 1 MKNFLGSIGNRIFFLLLGGIVVAVFATNWLAGNERRNTLRELRFQHLADRVEQIVQAVDN 60 +++FL S+ R+F +LL G+ VA LA ++R+ +ADR++ V +D Sbjct: 4 LRHFLSSMVGRLFVILLLGMSVAAIGATMLATSKRQQEFERQNLNRIADRLQGYVNLLDG 63 Query: 61 IPPAQRPIVLQAASNFGFEARMVEDMNEAIGPNASPSPSTSPLTEMLQARLGEDRKIAVQ 120 P + ++ + A+ P A + + L E+L R G + V Sbjct: 64 NPELRERLLEVGGPSV-----------RALLPGARLGRADTALMEVLDDRPGPVSRAHVH 112 Query: 121 RES--ECPPLRTDDP--------RAPR-RD------TCRVIYISLHDQALMRLRLHQPGE 163 S C P D + PR RD CR + ++L+D L++L L P Sbjct: 113 FTSFRSCIPKLQDLLPPPPPGHRKHPRERDPAFIPPKCRAVDVTLNDGTLLKLALDSP-- 170 Query: 164 PPALRARAGPGGPASLFGLQYILLFLVLIAMLAWLVARMATRPIRQLAQAASRLGSDIDH 223 A A G A ++ L ++ IA+LA++VARMA+ P+++LA AA LG D+ Sbjct: 171 -----AVAHNGILA--VDPWFLTLLVLAIAVLAYIVARMASAPLQELAAAAEDLGDDLQR 223 Query: 224 APLAETGPTEIRQAAHAFNAMQARIRRQIQHRTHMLAAITHDLQTPLTRMRLRLEKVSDP 283 PL GP E+++AA AFNAMQ R++R + RT MLAAITHDLQTPLTR+RLRLE V+D Sbjct: 224 DPLPLRGPREVQRAAEAFNAMQHRLQRHLAERTQMLAAITHDLQTPLTRLRLRLENVTDE 283 Query: 284 GLQQKLIDDLGVMHGMVREGLDLARSMDSSEKIQALDIDSLLDSVCADAADAGQDVALQG 343 L+++LI DL M +VREGL+LARS +S+E+ ALD+DSLL+S+ DAA+ G DV +G Sbjct: 284 VLRERLIGDLAAMQALVREGLELARSAESAEQRAALDLDSLLESIVEDAAEGGADVVFEG 343 Query: 344 STRAFVMAQPGALRRCLTNLIDNACKYGKSARVSIALEQQKIAIRIRDQGPGIPESELEA 403 T A +M +P A+ R +NL+DNA Y + RV + I + + D GPG+ E +LEA Sbjct: 344 GTGAVLMLRPLAMHRLFSNLVDNAVMYAQRVRVRVERSGGAITVMVADDGPGLAEDQLEA 403 Query: 404 VFEPFYRLEASRSRDTGGTGLGLTIALNIAENHHGQLRLRNLAKGGLEVLLELP 457 VF+PF R+E SRSR+TGG GLGLTIA +AE +L LRN A+GGLE +++ P Sbjct: 404 VFDPFVRVETSRSRETGGAGLGLTIARALAEKDGARLWLRNRAEGGLEAVVQWP 457 >ref|YP_001971380.1| putative two-component system, sensor histidine kinase transcriptional regulator [Stenotrophomonas maltophilia K279a] emb|CAQ45075.1| putative two-component system, sensor histidine kinase transcriptional regulatory protein [Stenotrophomonas maltophilia K279a] Length = 469 Score = 309 bits (792), Expect = 6e-82, Method: Compositional matrix adjust. Identities = 191/474 (40%), Positives = 270/474 (56%), Gaps = 37/474 (7%) Query: 1 MKNFLGSIGNRIFFLLLGGIVVAVFATNWLAGNERRNTLRELRFQHLADRVEQIVQAVDN 60 +++FL S+ R+F +LL G+ VA LA ++R+ +ADR++ V +D Sbjct: 4 LRHFLSSMVGRLFVILLLGMSVAAIGATMLATSKRQQEFERQNLNRIADRLQGYVNLLDG 63 Query: 61 IPPAQRPIVLQAASNFGFEARMVEDMNEAIGPNASPSPSTSPLTEMLQARLGEDRKIAVQ 120 P + ++ + A+ P A + + L E+L R G + V Sbjct: 64 NPELRERLLEIGGPSV-----------RALQPGARLGRADTALMEVLDDRPGPVSRAHVH 112 Query: 121 RES--ECPPLRTD---------DPRAPRRD------TCRVIYISLHDQALMRLRLHQPGE 163 S C P D RD CR + ++L+D L++L L P Sbjct: 113 FTSFRSCIPKLQDLLPPPPPGHRRHPRERDPAFIPPKCRAVDVTLNDGTLLKLALDSP-- 170 Query: 164 PPALRARAGPGGPASLFGLQYILLFLVLIAMLAWLVARMATRPIRQLAQAASRLGSDIDH 223 A A G A ++ L ++ IA+LA++VARMA+ P+++LA AA LG D+ Sbjct: 171 -----AVAHNGILA--VDPWFLTLLVLAIAVLAYIVARMASAPLQELAAAAEDLGDDLQR 223 Query: 224 APLAETGPTEIRQAAHAFNAMQARIRRQIQHRTHMLAAITHDLQTPLTRMRLRLEKVSDP 283 PL GP E+++AA AFNAMQ R++R + RT MLAAITHDLQTPLTR+RLRLE VSD Sbjct: 224 DPLPLRGPREVQRAAEAFNAMQHRLQRHLAERTQMLAAITHDLQTPLTRLRLRLENVSDE 283 Query: 284 GLQQKLIDDLGVMHGMVREGLDLARSMDSSEKIQALDIDSLLDSVCADAADAGQDVALQG 343 L+++LI DL M +VREGL+LARS +S+E+ ALD+DSLL+S+ DAA+ G DV +G Sbjct: 284 VLRERLIGDLAAMQALVREGLELARSAESAEQRAALDLDSLLESIVEDAAEGGADVVFEG 343 Query: 344 STRAFVMAQPGALRRCLTNLIDNACKYGKSARVSIALEQQKIAIRIRDQGPGIPESELEA 403 T A +M +P A+ R +NL+DNA Y RV + I + D GPG+ E +LEA Sbjct: 344 GTGAVLMLRPLAMHRLFSNLVDNAVMYAHRVRVRVERSGGTITAMVSDDGPGLAEDQLEA 403 Query: 404 VFEPFYRLEASRSRDTGGTGLGLTIALNIAENHHGQLRLRNLAKGGLEVLLELP 457 VF+PF R+E SRSR+TGG GLGLTIA +AE +L LRN A+GGLE +++ P Sbjct: 404 VFDPFVRVETSRSRETGGAGLGLTIARALAEKDGARLWLRNRAEGGLEAVVQWP 457 >ref|YP_002027688.1| integral membrane sensor signal transduction histidine kinase [Stenotrophomonas maltophilia R551-3] gb|ACF51005.1| integral membrane sensor signal transduction histidine kinase [Stenotrophomonas maltophilia R551-3] Length = 469 Score = 306 bits (785), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 185/474 (39%), Positives = 267/474 (56%), Gaps = 37/474 (7%) Query: 1 MKNFLGSIGNRIFFLLLGGIVVAVFATNWLAGNERRNTLRELRFQHLADRVEQIVQAVDN 60 +++F+ S+ R+F +LL G+ VA LA ++R+ +ADR++ V +D Sbjct: 4 LRHFMSSMVGRLFVILLLGMSVAAIGATMLATSKRQQEFERQNLNRIADRLQGYVNLLDG 63 Query: 61 IPPAQRPIVLQAASNFGFEARMVEDMNEAIGPNASPSPSTSPLTEMLQARLGEDRKIAVQ 120 P + ++ + A+ P A + + L E+L R G + V Sbjct: 64 NPELRERLLEIGGPSV-----------RALQPGARLGRADTALMEVLDDRPGPVSRAHVH 112 Query: 121 RES--ECPPLRTD---------DPRAPRRD------TCRVIYISLHDQALMRLRLHQPGE 163 S C P D RD CR + ++L+D L++L L P Sbjct: 113 FASFRSCIPKLQDLLPPPPPGHRRHPRERDPAFIPPKCRAVDVTLNDGTLLKLALDSPAV 172 Query: 164 PPALRARAGPGGPASLFGLQYILLFLVLIAMLAWLVARMATRPIRQLAQAASRLGSDIDH 223 P ++ L ++ IA+LA++VARMA+ P+++LA AA LG D+ Sbjct: 173 AHNGILAVDP---------WFLTLLVLAIAILAYIVARMASAPLQELAAAAEDLGDDLQR 223 Query: 224 APLAETGPTEIRQAAHAFNAMQARIRRQIQHRTHMLAAITHDLQTPLTRMRLRLEKVSDP 283 PL GP E+++AA AFNAMQ R++R + RT MLAAITHDLQTPLTR+RLRLE VSD Sbjct: 224 DPLPLRGPREVQRAAEAFNAMQHRLQRHLAERTQMLAAITHDLQTPLTRLRLRLENVSDE 283 Query: 284 GLQQKLIDDLGVMHGMVREGLDLARSMDSSEKIQALDIDSLLDSVCADAADAGQDVALQG 343 L+++LI DL M +VREGL+LARS +S+E+ ALD+DSLL+S+ D A+ G DV +G Sbjct: 284 TLRERLIGDLAAMQALVREGLELARSAESAEQRAALDLDSLLESIVEDTAEGGGDVVFEG 343 Query: 344 STRAFVMAQPGALRRCLTNLIDNACKYGKSARVSIALEQQKIAIRIRDQGPGIPESELEA 403 + A +M +P A+ R +NL+DNA Y RV + I + + D GPG+ E +LEA Sbjct: 344 GSGAVLMLRPLAMHRLFSNLVDNAVMYAYRVRVRVERSGGAITVVVADDGPGLAEDQLEA 403 Query: 404 VFEPFYRLEASRSRDTGGTGLGLTIALNIAENHHGQLRLRNLAKGGLEVLLELP 457 VF+PF R+E SRSR+TGG GLGLTIA +AE +L LRN A+GGLE +++ P Sbjct: 404 VFDPFVRVETSRSRETGGAGLGLTIARALAEKDGARLWLRNRAEGGLEAVVQWP 457 >ref|YP_003523111.1| integral membrane sensor signal transduction histidine kinase [Sideroxydans lithotrophicus ES-1] gb|ADE10724.1| integral membrane sensor signal transduction histidine kinase [Sideroxydans lithotrophicus ES-1] Length = 445 Score = 289 bits (740), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 197/462 (42%), Positives = 274/462 (59%), Gaps = 23/462 (4%) Query: 1 MKNFLGSIGNRIFFLLLGGIVVAVFATNWLAGNERRNTLRELRFQHLADRVEQIVQAVDN 60 M S+ R+F +LL G++V T L + ++ +R QHLA + ++V+ ++ Sbjct: 1 MFAIFHSMHGRLFLILLVGMIVTSIGTVLLTHSRQQELYERVRAQHLATDITELVETLEI 60 Query: 61 IPPAQRPIVLQAASNFGFEARMVEDMNEAIGPNASPSPSTSPLTEMLQARLGEDRKIAVQ 120 P R L G + +E I P + + + L+ RL ++ Sbjct: 61 TPLPLRDDFLHEPHGMGIHGHL----SEVIVPPFAARDRV--MEDALKQRLN---VASIA 111 Query: 121 RESECPPLRTDD-PRAPRRD----TCRVIYISLHDQALMRLRLHQPGEPPALRARAGPGG 175 ES D+ R RR C+ I+I+L D + + L + P +R ++ P Sbjct: 112 AESPNYAACGDEFIRWSRRLHQPLQCQRIHIALPDGSGLLLVIPMP----PMRDQSYPPP 167 Query: 176 PASLFGLQYILLFLVLIAMLAWLVARMATRPIRQLAQAASRLGSDIDHAPLAETGPTEIR 235 S +LLF V I +LAW+VAR+ATRP+RQLA AA +L PL E G +E+R Sbjct: 168 VWS-----AMLLFAVCIGLLAWVVARIATRPLRQLADAADKLDISRAGEPLPEQGSSEVR 222 Query: 236 QAAHAFNAMQARIRRQIQHRTHMLAAITHDLQTPLTRMRLRLEKVSDPGLQQKLIDDLGV 295 A AFN MQ RI ++ RT MLAAITHDLQTPLTR+RLRLEK+ D L+ KL+ D+ Sbjct: 223 MATRAFNRMQKRIYEDVRERTGMLAAITHDLQTPLTRLRLRLEKLPDEALRNKLVGDMQA 282 Query: 296 MHGMVREGLDLARSMDSSEKIQALDIDSLLDSVCADAADAGQDVALQGSTRAFVMAQPGA 355 M M++EGL+L+RS+DSSE +Q LD+DSLLDS+C+DA +AGQ + + T + AQP A Sbjct: 283 MQQMLQEGLELSRSLDSSEAMQLLDLDSLLDSLCSDAVEAGQQIYYRERTAVQLKAQPLA 342 Query: 356 LRRCLTNLIDNACKYGKSARVSIALEQQKIAIRIRDQGPGIPESELEAVFEPFYRLEASR 415 LRR +NL+DNA KYG+ A VS+ + ++ +RIRD GPGIP LE VF PFYR+E SR Sbjct: 343 LRRAFSNLLDNAVKYGQRAEVSLRRDARQCHVRIRDFGPGIPPELLETVFTPFYRIEHSR 402 Query: 416 SRDTGGTGLGLTIALNIAENHHGQLRLRNLAKGGLEVLLELP 457 SR++GGTGLGL+IA NI H+G+L L N A GGL+V + LP Sbjct: 403 SRESGGTGLGLSIARNIVLRHNGELTLSNHADGGLQVHVILP 444 >ref|YP_675448.1| periplasmic sensor signal transduction histidine kinase [Mesorhizobium sp. BNC1] gb|ABG64283.1| periplasmic sensor signal transduction histidine kinase [Chelativorans sp. BNC1] Length = 488 Score = 279 bits (713), Expect = 9e-73, Method: Compositional matrix adjust. Identities = 175/473 (36%), Positives = 257/473 (54%), Gaps = 47/473 (9%) Query: 2 KNFLGSIGNRIFFLLLGGIVVAVFATNWLAGNERRNTLRELRFQHLADRVEQIVQAVDNI 61 K ++ S+G ++F +LL G+ ++ LA R L + +A+RV V +D Sbjct: 4 KQYVRSLGGQVFLVLLIGVALSACLALGLANIRRLADLDRIHIDRVAERVMDYVILLDRA 63 Query: 62 PPAQRPIVLQAASNFGFEARMVEDMNEAIGPNASPSPST-------SPLTEMLQARLGED 114 P A + E++ P P T S L+ RLG Sbjct: 64 P-----------------AHVREEIRLKGFPGLHPPRGTEVTTGVDSALSTETSERLGRP 106 Query: 115 RKIAVQRESECPPLRTDDPRAPRR-----DTCRVIYISLHDQALMRLRLHQPGEPPALRA 169 + C P AP R C ++Y +L D + ++L P P A Sbjct: 107 VRAFNANPPSCLPY------APSRLFHTNTKCWMVYTTLKDGSTLKLATFSPR--PDTFA 158 Query: 170 RAGPGGPASLFGLQYILLFLVLIAMLAWLVARMATRPIRQLAQAASRLGSDIDHAPLAET 229 + P ++ + V + +L + V+RM + P++QL+ AA L D+D P+ E Sbjct: 159 MSPPDA-------VFLSILGVGVIVLTFFVSRMVSAPLQQLSTAARVLAEDLDSPPVTEQ 211 Query: 230 GPTEIRQAAHAFNAMQARIRRQIQHRTHMLAAITHDLQTPLTRMRLRLEKVSDPGLQQKL 289 GPTE+RQA AFN MQ R+R ++ +T +LA+ITHDLQTP+TR+RLRLEKV+D L+ +L Sbjct: 212 GPTEVRQAIRAFNTMQERLRDNVEEKTRILASITHDLQTPMTRLRLRLEKVTDSALRSRL 271 Query: 290 IDDLGVMHGMVREGLDLARSMDSSEKIQALDIDSLLDSVCADAADAGQDVALQGSTRAFV 349 IDDL M +VR+GL+ R + E + L +DSLL+SV DA++ G DV V Sbjct: 272 IDDLRSMQRLVRQGLEYHRGSEVEEPMVVLRLDSLLESVIDDASEGGADVKFIERANCDV 331 Query: 350 MAQPGALRRCLTNLIDNACKYGKSARVSIALEQQKIAIRIRDQGPGIPESELEAVFEPFY 409 A+P ALRRC +NLIDNA KYG A V + E ++ + IRD+GPGIP+ ++EAVF+PF Sbjct: 332 EARPEALRRCFSNLIDNALKYGGQAEVYVRQEDDRVHVHIRDRGPGIPDDKIEAVFQPFC 391 Query: 410 RLEASRSRDTGGTGLGLTIALNIAENHHGQLRLRNLAKGGLEVLLELPPMTPA 462 RL+ + S GG GLGLTIA N+A+ ++G L++ N A GGL+V++ L TP+ Sbjct: 392 RLDENVS---GGVGLGLTIARNMAQLNNGDLQISNGAGGGLDVVVTLKRSTPS 441 >ref|ZP_05033958.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Brevundimonas sp. BAL3] gb|EDX81387.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Brevundimonas sp. BAL3] Length = 440 Score = 271 bits (693), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 140/259 (54%), Positives = 176/259 (67%) Query: 196 AWLVARMATRPIRQLAQAASRLGSDIDHAPLAETGPTEIRQAAHAFNAMQARIRRQIQHR 255 AWL + A P+ +L+ A LG D+D PL E G E+RQAA A N MQ R+R I R Sbjct: 177 AWLASHRAAAPLARLSAGALALGRDLDRPPLVEEGAREVRQAAAALNVMQTRLRAMIAER 236 Query: 256 THMLAAITHDLQTPLTRMRLRLEKVSDPGLQQKLIDDLGVMHGMVREGLDLARSMDSSEK 315 T +LAA+ HDLQTPLTRMRLR+EK+ D GL+ +LI DL M +VREGLDLAR + E Sbjct: 237 TRVLAAVAHDLQTPLTRMRLRVEKIGDDGLRAQLIADLAAMQHLVREGLDLARIETAPEP 296 Query: 316 IQALDIDSLLDSVCADAADAGQDVALQGSTRAFVMAQPGALRRCLTNLIDNACKYGKSAR 375 + +D+D+LL ++C DAADAGQ V A + +P ALRRCLTNLIDNA ++G A Sbjct: 297 VVPVDLDALLSALCEDAADAGQPVVFAQGCGAVLPTRPQALRRCLTNLIDNAVRHGGGAT 356 Query: 376 VSIALEQQKIAIRIRDQGPGIPESELEAVFEPFYRLEASRSRDTGGTGLGLTIALNIAEN 435 VS +E + +RD GPG+PE LEA+FEPFYRL+ SRSRD+GGTGLGLTIA +AE Sbjct: 357 VSAMVEGTTTRLAVRDHGPGVPEDRLEALFEPFYRLDPSRSRDSGGTGLGLTIARRMAEV 416 Query: 436 HHGQLRLRNLAKGGLEVLL 454 G+L L N GGLE ++ Sbjct: 417 AGGRLTLANAGDGGLEAVV 435