BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0055.p (187 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774938.1| hypothetical protein Hsero_1515 [Herbaspiril... 360 8e-98 ref|YP_003049785.1| proline-rich region [Methylovorus glucosetro... 120 1e-25 ref|YP_004201016.1| hypothetical protein GM18_4328 [Geobacter sp... 114 6e-24 ref|YP_004751845.1| hypothetical protein CFU_1190 [Collimonas fu... 113 2e-23 ref|YP_002989114.1| hypothetical protein Dd703_3534 [Dickeya dad... 109 1e-22 ref|ZP_04943016.1| hypothetical protein BCPG_04563 [Burkholderia... 109 2e-22 ref|YP_003169064.1| hypothetical protein CAP2UW1_3885 [Candidatu... 108 3e-22 ref|YP_001100782.1| hypothetical protein HEAR2537 [Herminiimonas... 103 1e-20 ref|ZP_08505610.1| hypothetical protein METUNv1_02675 [Methylove... 102 2e-20 ref|YP_002137639.1| lipoprotein [Geobacter bemidjiensis Bem] >gi... 100 8e-20 >ref|YP_003774938.1| hypothetical protein Hsero_1515 [Herbaspirillum seropedicae SmR1] gb|ADJ63030.1| hypothetical protein Hsero_1515 [Herbaspirillum seropedicae SmR1] Length = 187 Score = 360 bits (923), Expect = 8e-98, Method: Compositional matrix adjust. Identities = 186/187 (99%), Positives = 186/187 (99%) Query: 1 MNPINKRAATVCALGAMVALGGCVSVPTGPSVMAMPGKGKSYEQFRADQQQCQQYAQDAI 60 MNPINKRAATVCALGAMVALGGCVSVPTGPSVMAMPGKGKSYEQFRADQQQCQQYAQDAI Sbjct: 1 MNPINKRAATVCALGAMVALGGCVSVPTGPSVMAMPGKGKSYEQFRADQQQCQQYAQDAI 60 Query: 61 GGQAAQTQNNAANSAAVGTAVGAVAGALIGAASGNAGAGAAIGAGGGLLVGSAAGSNAAA 120 GGQAAQTQNNAANSAAVGTAVGAVAGALIGAASGNAGAGAAIGAGGGLLVGS AGSNAAA Sbjct: 61 GGQAAQTQNNAANSAAVGTAVGAVAGALIGAASGNAGAGAAIGAGGGLLVGSTAGSNAAA 120 Query: 121 GGNYSMQQRYDMTYTQCMYSKGNQVQQPVQTTTVYTYHPRYYYYAPPPPPGYYGPPPVYY 180 GGNYSMQQRYDMTYTQCMYSKGNQVQQPVQTTTVYTYHPRYYYYAPPPPPGYYGPPPVYY Sbjct: 121 GGNYSMQQRYDMTYTQCMYSKGNQVQQPVQTTTVYTYHPRYYYYAPPPPPGYYGPPPVYY 180 Query: 181 GPPPGAY 187 GPPPGAY Sbjct: 181 GPPPGAY 187 >ref|YP_003049785.1| proline-rich region [Methylovorus glucosetrophus SIP3-4] ref|YP_004038444.1| proline-rich region [Methylovorus sp. MP688] gb|ACT49258.1| proline-rich region [Methylovorus glucosetrophus SIP3-4] gb|ADQ83208.1| proline-rich region [Methylovorus sp. MP688] Length = 170 Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 74/134 (55%), Positives = 93/134 (69%), Gaps = 8/134 (5%) Query: 14 LGAMVALGGCVSVPTGPSVMAMPGKGKSYEQFRADQQQCQQYAQDAIGGQAAQTQNNA-A 72 LG + + GCV+VP GPS MA+PG K+++QFRAD C+QY + G A Q N++ Sbjct: 9 LGGSLVVSGCVTVPDGPSRMALPGSTKTFDQFRADDASCRQYGLEQSGASAKQAGNDSMV 68 Query: 73 NSAAVGTAVGAVAGALIGAASGNAGAGA-AIGAGGGLLVGSAAGSNAAAGGNYSMQQRYD 131 SAAVGTAVGAV GA IG G GA A GAG GLLVG+AAG++AA +Y++QQRYD Sbjct: 69 KSAAVGTAVGAVLGAAIG------GHGATAFGAGTGLLVGTAAGADAAQASSYTVQQRYD 122 Query: 132 MTYTQCMYSKGNQV 145 Y QCMY+KG+QV Sbjct: 123 NAYLQCMYAKGHQV 136 >ref|YP_004201016.1| hypothetical protein GM18_4328 [Geobacter sp. M18] gb|ADW15740.1| hypothetical protein GM18_4328 [Geobacter sp. M18] Length = 301 Score = 114 bits (285), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 73/147 (49%), Positives = 97/147 (65%), Gaps = 1/147 (0%) Query: 7 RAATVCALGAMVALGGCVSVPTGPSVMAMPGKGKSYEQFRADQQQCQQYAQDAIGGQAAQ 66 + + + ++ LGGCV+VP GPSV +P KGKS+E F + + C+Q+A+ IG A + Sbjct: 2 KREILTGVVVLMTLGGCVTVPNGPSVNVLPTKGKSFETFMKEDETCRQWAKSQIGAPAQE 61 Query: 67 TQN-NAANSAAVGTAVGAVAGALIGAASGNAGAGAAIGAGGGLLVGSAAGSNAAAGGNYS 125 T + N A SA VGTAVG GA IG+ASG+AGAGA IGA GLL+GSAAGS +A Sbjct: 62 TYDQNVATSAVVGTAVGTGVGAAIGSASGHAGAGAVIGAATGLLLGSAAGSGSAQVYGAQ 121 Query: 126 MQQRYDMTYTQCMYSKGNQVQQPVQTT 152 Q++YD Y QCMY+ GNQ+ + QT Sbjct: 122 AQRQYDNAYVQCMYTYGNQIPETRQTV 148 >ref|YP_004751845.1| hypothetical protein CFU_1190 [Collimonas fungivorans Ter331] gb|AEK61022.1| conserved hypothetical protein [Collimonas fungivorans Ter331] Length = 187 Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 96/179 (53%), Positives = 116/179 (64%), Gaps = 10/179 (5%) Query: 11 VCALGAMVALGGCVSVPTGPSVMAMPGKGKSYEQFRADQQQCQQYAQDAIGGQAAQTQ-N 69 + A V L GCV+ P+GP+VMA+PG GKSYEQFR D+ CQ+ AQ+ IG A Q + Sbjct: 9 IIAASLAVLLTGCVTAPSGPNVMALPGSGKSYEQFRNDEAVCQRAAQERIGPYAPQAAAD 68 Query: 70 NAANSAAVGTAVGAVAGALIGAASGNAGAGAAIGAGGGLLVGSAAGSNAAAGGNYSMQQR 129 NA +AA GT +GA AGALIGAA+G AGAGAAIG G GLL GS+ ++AA +Y MQ+ Sbjct: 69 NAVGTAAAGTVIGAAAGALIGAATGRAGAGAAIGGGVGLLAGSSVAGDSAARSSYGMQRE 128 Query: 130 YDMTYTQCMYSKGNQVQQPVQTTTVYTYHPRYYYYAPPP----PPGYYGPPPVYYGPPP 184 Y+ YTQCMY+KGNQV PV + R YAP P PP YY P YGPPP Sbjct: 129 YNNVYTQCMYAKGNQV--PVAGGYA---NSRRQQYAPAPQYSTPPDYYPPQRGNYGPPP 182 >ref|YP_002989114.1| hypothetical protein Dd703_3534 [Dickeya dadantii Ech703] gb|ACS87292.1| conserved hypothetical protein [Dickeya dadantii Ech703] Length = 177 Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 77/171 (45%), Positives = 98/171 (57%), Gaps = 10/171 (5%) Query: 13 ALGAM----VALGGCVSVPTGPSVMAMPGKGKSYEQFRADQQQCQQYAQDAIGGQAAQTQ 68 ALG M V L GCVS PT PSVM++PG GKSYEQFRAD C+ A A+ G+A+ Sbjct: 6 ALGVMLLAGVGLSGCVSTPTAPSVMSLPGSGKSYEQFRADDAVCKNTAYRAVNGEASTAN 65 Query: 69 NNAANSAAVGTAVGAVAGALIGAASGN---AGAGAAIGAGGGLLVGSAAGSNAAAGGNYS 125 N + +A G A+G GAL+GAA G + GAA+GA GLLVGSA S A + Sbjct: 66 NQSVTTAVAGAAIGTATGALLGAAGGGPRGSSNGAAVGAASGLLVGSAIASGNGARTQGA 125 Query: 126 MQQRYDMTYTQCMYSKGNQVQQP---VQTTTVYTYHPRYYYYAPPPPPGYY 173 +Q ++D+ Y QCMY+KG ++ Q Q V P Y A PP Y+ Sbjct: 126 LQDQFDVVYMQCMYAKGEKIPQAYSWAQQADVSEVPPDYSPGASAVPPDYH 176 >ref|ZP_04943016.1| hypothetical protein BCPG_04563 [Burkholderia cenocepacia PC184] gb|EAY66187.1| hypothetical protein BCPG_04563 [Burkholderia cenocepacia PC184] Length = 183 Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 74/144 (51%), Positives = 92/144 (63%), Gaps = 9/144 (6%) Query: 7 RAATVCALGAMVALGGCVSVPTGPSVMAMPGKGKSYEQFRADQQQCQQYAQDAIGGQAA- 65 R V +L A+ LG C +PTGPSVMA+PG GKS++QFRAD C+QYA + GG +A Sbjct: 9 RVPAVLSLAAL--LGACAYLPTGPSVMALPGTGKSFDQFRADDGSCRQYAFEQSGGVSAG 66 Query: 66 -QTQNNAANSAAVGTAVGAVAGALIGAASGNAGAGAAIGAGGGLLVGSAAGSNAAAGGNY 124 + +A SAAVG A+GA AGA N G GA +GAG GLL GS G+ AA G Y Sbjct: 67 QASTASAVGSAAVGNALGATAGAAF-----NGGTGATVGAGAGLLAGSVVGAGAAQGSAY 121 Query: 125 SMQQRYDMTYTQCMYSKGNQVQQP 148 +Q+RYD Y QCMY+ GN+V P Sbjct: 122 DVQRRYDYAYLQCMYATGNRVPVP 145 >ref|YP_003169064.1| hypothetical protein CAP2UW1_3885 [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gb|ACV37135.1| conserved hypothetical protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 179 Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 66/132 (50%), Positives = 86/132 (65%), Gaps = 8/132 (6%) Query: 17 MVALGGCVSVP-TGPSVMAMPGKGKSYEQFRADQQQCQQYAQDAIGGQA--AQTQNNAAN 73 + L GCVS+P GPSV A+PG G+ +E FRAD C+ YA++AIG Q+ + A Sbjct: 12 LCVLAGCVSLPPEGPSVTALPGSGQRFETFRADDAMCRSYAREAIGPQSPAQAAVDAGAA 71 Query: 74 SAAVGTAVGAVAGALIGAASGNAGAGAAIGAGGGLLVGSAAGSNAAAGGNYSMQQRYDMT 133 SAA+GT VGA GA I N GAA+GAG GLL GS AG AA + ++QQRYD + Sbjct: 72 SAAIGTLVGAALGAAI-----NGSRGAAVGAGVGLLAGSTAGVGAANASSQALQQRYDQS 126 Query: 134 YTQCMYSKGNQV 145 Y QCMY++G++V Sbjct: 127 YVQCMYARGHKV 138 >ref|YP_001100782.1| hypothetical protein HEAR2537 [Herminiimonas arsenicoxydans] emb|CAL62661.1| Conserved hypothetical protein [Herminiimonas arsenicoxydans] Length = 142 Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 70/129 (54%), Positives = 83/129 (64%), Gaps = 4/129 (3%) Query: 17 MVALGGCVSVPTGPSVMAMPGKGKSYEQFRADQQQCQQYAQDAIGGQAAQTQNNAANSAA 76 +V L GC S PTGPS+ MPG GKS+EQF D C+QYA + GG N A SAA Sbjct: 14 LVLLAGCASAPTGPSIAVMPGAGKSFEQFNVDDIVCRQYAANQTGGAVQSANNKAVGSAA 73 Query: 77 VGTAVGAVAGALIGAASGNAGAGAAIGAGGGLLVGSAAGSNAAAGGNYSMQQRYDMTYTQ 136 +GT V GA GAA G + GA GAG GLLVGSAAG+NA+ G Y Q+ YD++Y Q Sbjct: 74 IGT----VIGAAAGAAIGGSHRGAGTGAGAGLLVGSAAGANASQYGTYGAQRSYDISYAQ 129 Query: 137 CMYSKGNQV 145 CMY+KGN V Sbjct: 130 CMYAKGNNV 138 >ref|ZP_08505610.1| hypothetical protein METUNv1_02675 [Methyloversatilis universalis FAM5] gb|EGK71286.1| hypothetical protein METUNv1_02675 [Methyloversatilis universalis FAM5] Length = 228 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 60/124 (48%), Positives = 74/124 (59%), Gaps = 3/124 (2%) Query: 22 GCVSVPTGPSVMAMPGKGKSYEQFRADQQQCQQYAQDAIGGQAAQTQNNAANSAAVGTAV 81 GC + P+GPSVMA+PG GK++EQFR D C+ YA+D GG A N AA + V +A Sbjct: 18 GCATTPSGPSVMALPGSGKTFEQFRYDDALCRDYARDQTGGTDA---NEAATRSGVRSAA 74 Query: 82 GAVAGALIGAASGNAGAGAAIGAGGGLLVGSAAGSNAAAGGNYSMQQRYDMTYTQCMYSK 141 A A GAA+GAG GLLVG AAGS+AA Q+ YD Y QCMY+K Sbjct: 75 VGTAVGAAAGALIGGRDGAAVGAGTGLLVGGAAGSDAAQSSARGTQRGYDNAYIQCMYAK 134 Query: 142 GNQV 145 G +V Sbjct: 135 GQRV 138 >ref|YP_002137639.1| lipoprotein [Geobacter bemidjiensis Bem] gb|ACH37843.1| lipoprotein, putative [Geobacter bemidjiensis Bem] Length = 176 Score = 100 bits (250), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 82/162 (50%), Positives = 100/162 (61%), Gaps = 7/162 (4%) Query: 20 LGGCVSVPTGPSVMAMPGKGKSYEQFRADQQQCQQYAQDAIGGQAAQTQN-NAANSAAVG 78 + GC +VPTGPSV +P GKS+EQF A+ C+++++ +G T N N A SA VG Sbjct: 18 VSGCATVPTGPSVRVLPAPGKSFEQFMAEDAVCRRWSEQQLGLNRQDTVNQNTATSAVVG 77 Query: 79 TAVGAVAGALIGAASGNAGAGAAIGAGGGLLVGSAAGSNAAAGGNYSMQQRYDMTYTQCM 138 TAVGA GAL+GAA GNAG GAAIG G GLL G+A+GS + Y Q+ YD TY QCM Sbjct: 78 TAVGAGVGALLGAAGGNAGTGAAIGGGTGLLFGAASGSESGRAYGYEAQRLYDNTYVQCM 137 Query: 139 YSKGNQVQQPVQTTTVYTYHPRYYYYAPPPPPGYYGPPPVYY 180 YSKGNQ+ V+ APPPPP Y PP YY Sbjct: 138 YSKGNQIPGSVRKVRRVRTV------APPPPPDMYSVPPDYY 173