BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0038.p (247 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774922.1| sugar phosphate isomerase/epimerase [Herbasp... 501 e-140 ref|YP_004849238.1| PfkB-family carbohydrate kinase [Pseudogulbe... 219 4e-55 ref|ZP_03699935.1| PfkB domain protein [Lutiella nitroferrum 200... 215 4e-54 ref|NP_250950.1| hypothetical protein PA2260 [Pseudomonas aerugi... 203 2e-50 gb|AAT50882.1| PA2260 [synthetic construct] 203 2e-50 ref|YP_259827.2| AP endonuclease [Pseudomonas fluorescens Pf-5] ... 201 1e-49 pdb|1YX1|A Chain A, Crystal Structure Of Protein Of Unknown Func... 201 1e-49 ref|YP_002799838.1| hypothetical protein Avin_26880 [Azotobacter... 200 1e-49 ref|YP_002892986.1| Xylose isomerase domain-containing protein T... 199 3e-49 ref|YP_004354564.1| hypothetical protein PSEBR_c2g65 [Pseudomona... 199 4e-49 >ref|YP_003774922.1| sugar phosphate isomerase/epimerase [Herbaspirillum seropedicae SmR1] gb|ADJ63014.1| sugar phosphate isomerase/epimerase protein [Herbaspirillum seropedicae SmR1] Length = 247 Score = 501 bits (1291), Expect = e-140, Method: Compositional matrix adjust. Identities = 247/247 (100%), Positives = 247/247 (100%) Query: 1 MSPVLVAASAYGADLVRRVGHADLVPMVAAAGAAGLEIRRELFDGPQDLPALRELLAQHK 60 MSPVLVAASAYGADLVRRVGHADLVPMVAAAGAAGLEIRRELFDGPQDLPALRELLAQHK Sbjct: 1 MSPVLVAASAYGADLVRRVGHADLVPMVAAAGAAGLEIRRELFDGPQDLPALRELLAQHK 60 Query: 61 LFSVYSAPFELFGAEGRFDREQIALAMSEAEELGARFLKVSLGHFSAASDLQSLLRFLSH 120 LFSVYSAPFELFGAEGRFDREQIALAMSEAEELGARFLKVSLGHFSAASDLQSLLRFLSH Sbjct: 61 LFSVYSAPFELFGAEGRFDREQIALAMSEAEELGARFLKVSLGHFSAASDLQSLLRFLSH 120 Query: 121 SPIEVLLENDQTPQGGRLEPIVSFLALCTGNGYAFGMTFDMGNWHWQGVDPETAARSLAP 180 SPIEVLLENDQTPQGGRLEPIVSFLALCTGNGYAFGMTFDMGNWHWQGVDPETAARSLAP Sbjct: 121 SPIEVLLENDQTPQGGRLEPIVSFLALCTGNGYAFGMTFDMGNWHWQGVDPETAARSLAP 180 Query: 181 HVRYVHCKGVQDHKGKLRAVPLQAQDSHWQEMLAHFPTGILRAIEFPLVGSDLEETTRRH 240 HVRYVHCKGVQDHKGKLRAVPLQAQDSHWQEMLAHFPTGILRAIEFPLVGSDLEETTRRH Sbjct: 181 HVRYVHCKGVQDHKGKLRAVPLQAQDSHWQEMLAHFPTGILRAIEFPLVGSDLEETTRRH 240 Query: 241 VAMLAAV 247 VAMLAAV Sbjct: 241 VAMLAAV 247 >ref|YP_004849238.1| PfkB-family carbohydrate kinase [Pseudogulbenkiania sp. NH8B] dbj|BAK78824.1| PfkB-family carbohydrate kinase [Pseudogulbenkiania sp. NH8B] Length = 567 Score = 219 bits (557), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 129/246 (52%), Positives = 161/246 (65%), Gaps = 1/246 (0%) Query: 1 MSPVLVAASAYGADLVRRVGHADLVPMVAAAGAAGLEIRRELF-DGPQDLPALRELLAQH 59 M V V SAYGA LV+ G + + A AGAAG+EIRRELF P +L L + LA Sbjct: 1 MHAVNVVTSAYGASLVQTHGQQHFIALAAVAGAAGIEIRRELFPTTPPELGPLADALAHS 60 Query: 60 KLFSVYSAPFELFGAEGRFDREQIALAMSEAEELGARFLKVSLGHFSAASDLQSLLRFLS 119 L VYSAP ELFG +G+ D ++ LA++EA ELGA LK+ LG++ A SDL L + L+ Sbjct: 61 HLDVVYSAPLELFGTDGQLDLARLDLALAEAVELGASTLKLPLGYYGAGSDLAPLAQRLA 120 Query: 120 HSPIEVLLENDQTPQGGRLEPIVSFLALCTGNGYAFGMTFDMGNWHWQGVDPETAARSLA 179 SP+ +L+ENDQTP GG L P+V+F C G GMTFD+GNWHW G DP AA +LA Sbjct: 121 GSPVRLLVENDQTPYGGTLAPLVAFFTACRAEGVPVGMTFDIGNWHWTGTDPLVAAVALA 180 Query: 180 PHVRYVHCKGVQDHKGKLRAVPLQAQDSHWQEMLAHFPTGILRAIEFPLVGSDLEETTRR 239 P+V Y+H KGV+ GKL AVPL D+ W+ + AHF I RAIEFPL G DL T R Sbjct: 181 PYVDYLHGKGVEARGGKLHAVPLSESDAGWRRLFAHFRADIPRAIEFPLSGGDLAALTAR 240 Query: 240 HVAMLA 245 +VA+LA Sbjct: 241 YVALLA 246 >ref|ZP_03699935.1| PfkB domain protein [Lutiella nitroferrum 2002] gb|EEG07238.1| PfkB domain protein [Lutiella nitroferrum 2002] Length = 567 Score = 215 bits (548), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 132/246 (53%), Positives = 161/246 (65%), Gaps = 1/246 (0%) Query: 1 MSPVLVAASAYGADLVRRVGHADLVPMVAAAGAAGLEIRRELF-DGPQDLPALRELLAQH 59 M V V SAYGA LV+ G + + AAAGAAG+EIRRELF P L L + LA Sbjct: 1 MHAVNVVTSAYGASLVQTHGQQHFIALAAAAGAAGIEIRRELFPTSPPLLGPLADALAAS 60 Query: 60 KLFSVYSAPFELFGAEGRFDREQIALAMSEAEELGARFLKVSLGHFSAASDLQSLLRFLS 119 L VYSAP ELFG +G+ D ++ LA++EA ELGA LK+ LGH+ A SDL L + L+ Sbjct: 61 HLDVVYSAPLELFGTDGQLDLARLELALAEAVELGAGTLKLPLGHYGAVSDLAPLAQRLA 120 Query: 120 HSPIEVLLENDQTPQGGRLEPIVSFLALCTGNGYAFGMTFDMGNWHWQGVDPETAARSLA 179 SPI +L+ENDQTP GG L P+V+F C G GMTFD+GNWHW DP AA +LA Sbjct: 121 GSPIRLLVENDQTPHGGTLAPLVAFFTACRAEGVPVGMTFDIGNWHWTDTDPLAAAVALA 180 Query: 180 PHVRYVHCKGVQDHKGKLRAVPLQAQDSHWQEMLAHFPTGILRAIEFPLVGSDLEETTRR 239 P+V Y+H KGV+ GKL AVPL D+ W+ + AHF T I RAIEFPL G DL T R Sbjct: 181 PYVDYLHGKGVEARGGKLHAVPLSESDAGWRRLFAHFRTDIPRAIEFPLSGGDLAALTAR 240 Query: 240 HVAMLA 245 +VA+LA Sbjct: 241 YVALLA 246 >ref|NP_250950.1| hypothetical protein PA2260 [Pseudomonas aeruginosa PAO1] ref|ZP_01365624.1| hypothetical protein PaerPA_01002750 [Pseudomonas aeruginosa PACS2] ref|YP_002440633.1| putative putative epimerase [Pseudomonas aeruginosa LESB58] ref|ZP_04934022.1| hypothetical protein PA2G_01363 [Pseudomonas aeruginosa 2192] gb|AAG05648.1|AE004652_1 hypothetical protein PA2260 [Pseudomonas aeruginosa PAO1] gb|AAK37647.1| KguE [Pseudomonas aeruginosa PAO1] gb|EAZ58141.1| hypothetical protein PA2G_01363 [Pseudomonas aeruginosa 2192] emb|CAW27771.1| putative putative epimerase [Pseudomonas aeruginosa LESB58] dbj|GAA17840.1| putative putative epimerase [Pseudomonas aeruginosa NCMG1179] gb|AEO75263.1| putative epimerase [Pseudomonas aeruginosa M18] Length = 260 Score = 203 bits (517), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 113/247 (45%), Positives = 151/247 (61%), Gaps = 3/247 (1%) Query: 1 MSPVLVAASAYGADLVRRVGHADLVPMVAAAGAAGLEIRRELFDGPQDLPALRELLAQHK 60 + PV ++ S+YGADLVR G A +P++A AGA +E+R ELF GP D AL + Sbjct: 3 LHPVSISLSSYGADLVRSRGQASFLPLLAMAGAQRVELREELFAGPPDTEALTAAIQLQG 62 Query: 61 LFSVYSAPFELFGAEGRFDREQIALAMSEAEELGARFLKVSLGHFSAASDLQSLLRFLSH 120 L V+S+P EL+ +G+ + E + + AE GA +LKVSLG DL +L R L+ Sbjct: 63 LECVFSSPLELWREDGQLNPE-LEPTLRRAEACGAGWLKVSLGLLPEQPDLAALGRRLAR 121 Query: 121 SPIEVLLENDQTPQGGRLEPIVSFLALCTGNGYAFGMTFDMGNWHWQGVDPETAARSLAP 180 +++L+ENDQTPQGGR+E + F L MTFD+GNW WQ + AA L Sbjct: 122 HGLQLLVENDQTPQGGRIEVLERFFRLAERQQLDLAMTFDIGNWRWQEQAADEAALRLGR 181 Query: 181 HVRYVHCKGV-QDHKGKLRAVPLQAQD-SHWQEMLAHFPTGILRAIEFPLVGSDLEETTR 238 +V YVHCK V ++ GKL AVP A D +WQ +L HFP G+ RAIE+PL G DL +R Sbjct: 182 YVGYVHCKAVIRNRDGKLVAVPPSAADLQYWQRLLQHFPEGVARAIEYPLQGDDLLSLSR 241 Query: 239 RHVAMLA 245 RH+A LA Sbjct: 242 RHIAALA 248 >gb|AAT50882.1| PA2260 [synthetic construct] Length = 261 Score = 203 bits (517), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 113/247 (45%), Positives = 151/247 (61%), Gaps = 3/247 (1%) Query: 1 MSPVLVAASAYGADLVRRVGHADLVPMVAAAGAAGLEIRRELFDGPQDLPALRELLAQHK 60 + PV ++ S+YGADLVR G A +P++A AGA +E+R ELF GP D AL + Sbjct: 3 LHPVSISLSSYGADLVRSRGQASFLPLLAMAGAQRVELREELFAGPPDTEALTAAIQLQG 62 Query: 61 LFSVYSAPFELFGAEGRFDREQIALAMSEAEELGARFLKVSLGHFSAASDLQSLLRFLSH 120 L V+S+P EL+ +G+ + E + + AE GA +LKVSLG DL +L R L+ Sbjct: 63 LECVFSSPLELWREDGQLNPE-LEPTLRRAEACGAGWLKVSLGLLPEQPDLAALGRRLAR 121 Query: 121 SPIEVLLENDQTPQGGRLEPIVSFLALCTGNGYAFGMTFDMGNWHWQGVDPETAARSLAP 180 +++L+ENDQTPQGGR+E + F L MTFD+GNW WQ + AA L Sbjct: 122 HGLQLLVENDQTPQGGRIEVLERFFRLAERQQLDLAMTFDIGNWRWQEQAADEAALRLGR 181 Query: 181 HVRYVHCKGV-QDHKGKLRAVPLQAQD-SHWQEMLAHFPTGILRAIEFPLVGSDLEETTR 238 +V YVHCK V ++ GKL AVP A D +WQ +L HFP G+ RAIE+PL G DL +R Sbjct: 182 YVGYVHCKAVIRNRDGKLVAVPPSAADLQYWQRLLQHFPEGVARAIEYPLQGDDLLSLSR 241 Query: 239 RHVAMLA 245 RH+A LA Sbjct: 242 RHIAALA 248 >ref|YP_259827.2| AP endonuclease [Pseudomonas fluorescens Pf-5] gb|AAY91993.2| AP endonuclease, family 2 [Pseudomonas fluorescens Pf-5] Length = 260 Score = 201 bits (510), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 115/247 (46%), Positives = 149/247 (60%), Gaps = 5/247 (2%) Query: 2 SPVLVAASAYGADLVRRVGHADLVPMVAAAGAAGLEIRRELFDGPQDLPA-LRELLAQHK 60 SPV ++ S+YGADLVR G A +P+VAAAGA+ +E R EL Q PA L A+H Sbjct: 4 SPVSISLSSYGADLVRAQGQAHFIPLVAAAGASCIEWREELLTHEQ--PAELARSAAEHG 61 Query: 61 LFSVYSAPFELFGAEGRFDREQIALAMSEAEELGARFLKVSLGHFSAASDLQSLLRFLSH 120 L SV+S+P EL+ AE Q++ + A E GA+ LKVSLGHF DL+SL L Sbjct: 62 LESVFSSPLELWQAERSEPNPQLSATLQRAREFGAKRLKVSLGHFREHHDLRSLATLLFR 121 Query: 121 SPIEVLLENDQTPQGGRLEPIVSFLALCTGNGYAFGMTFDMGNWHWQGVDPETAARSLAP 180 P+ +L+ENDQT GGR+EP F + MTFD+GNW WQ AAR L Sbjct: 122 QPLALLVENDQTAHGGRIEPFQRFFSAVEALNLPLRMTFDIGNWQWQEQSALNAARLLGR 181 Query: 181 HVRYVHCKGVQDH-KGKLRAVPLQAQDSH-WQEMLAHFPTGILRAIEFPLVGSDLEETTR 238 HV YVHCK V+ GKL A+P A + H W+++L H GI RA+E+PL G+DL + T Sbjct: 182 HVAYVHCKAVRLRVDGKLVAIPPGAPELHQWEQLLRHMTQGITRAVEYPLQGTDLLQVTT 241 Query: 239 RHVAMLA 245 V++LA Sbjct: 242 EQVSLLA 248 >pdb|1YX1|A Chain A, Crystal Structure Of Protein Of Unknown Function Pa2260 From Pseudomonas Aeruginosa, Possible Sugar Phosphate Isomerase pdb|1YX1|B Chain B, Crystal Structure Of Protein Of Unknown Function Pa2260 From Pseudomonas Aeruginosa, Possible Sugar Phosphate Isomerase pdb|1YX1|C Chain C, Crystal Structure Of Protein Of Unknown Function Pa2260 From Pseudomonas Aeruginosa, Possible Sugar Phosphate Isomerase Length = 264 Score = 201 bits (510), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 112/247 (45%), Positives = 150/247 (60%), Gaps = 3/247 (1%) Query: 1 MSPVLVAASAYGADLVRRVGHADLVPMVAAAGAAGLEIRRELFDGPQDLPALRELLAQHK 60 + PV ++ S+YGADLVR G A +P++A AGA +E+R ELF GP D AL + Sbjct: 5 LHPVSISLSSYGADLVRSRGQASFLPLLAXAGAQRVELREELFAGPPDTEALTAAIQLQG 64 Query: 61 LFSVYSAPFELFGAEGRFDREQIALAMSEAEELGARFLKVSLGHFSAASDLQSLLRFLSH 120 L V+S+P EL+ +G+ + E + + AE GA +LKVSLG DL +L R L+ Sbjct: 65 LECVFSSPLELWREDGQLNPE-LEPTLRRAEACGAGWLKVSLGLLPEQPDLAALGRRLAR 123 Query: 121 SPIEVLLENDQTPQGGRLEPIVSFLALCTGNGYAFGMTFDMGNWHWQGVDPETAARSLAP 180 +++L+ENDQTPQGGR+E + F L TFD+GNW WQ + AA L Sbjct: 124 HGLQLLVENDQTPQGGRIEVLERFFRLAERQQLDLAXTFDIGNWRWQEQAADEAALRLGR 183 Query: 181 HVRYVHCKGV-QDHKGKLRAVPLQAQD-SHWQEMLAHFPTGILRAIEFPLVGSDLEETTR 238 +V YVHCK V ++ GKL AVP A D +WQ +L HFP G+ RAIE+PL G DL +R Sbjct: 184 YVGYVHCKAVIRNRDGKLVAVPPSAADLQYWQRLLQHFPEGVARAIEYPLQGDDLLSLSR 243 Query: 239 RHVAMLA 245 RH+A LA Sbjct: 244 RHIAALA 250 >ref|YP_002799838.1| hypothetical protein Avin_26880 [Azotobacter vinelandii DJ] gb|ACO78863.1| conserved hypothetical protein [Azotobacter vinelandii DJ] Length = 260 Score = 200 bits (509), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 111/247 (44%), Positives = 147/247 (59%), Gaps = 3/247 (1%) Query: 1 MSPVLVAASAYGADLVRRVGHADLVPMVAAAGAAGLEIRRELFDGPQDLPALRELLAQHK 60 + PV V+ S+YGA LVR G A +P++A AGAA E+R ELFD P D AL + K Sbjct: 3 LYPVSVSLSSYGASLVRERGQASFLPLLAQAGAARAELREELFDAPPDPEALSAAVRSLK 62 Query: 61 LFSVYSAPFELFGAEGRFDREQIALAMSEAEELGARFLKVSLGHFSAASDLQSLLRFLSH 120 L +YSAP EL+ +GR + + A GAR+LKVSLGH+ A DL L + L+ Sbjct: 63 LDCLYSAPLELWTEQGRLS-AALGPTLERASACGARWLKVSLGHYRAGYDLDELAQQLAG 121 Query: 121 SPIEVLLENDQTPQGGRLEPIVSFLALCTGNGYAFGMTFDMGNWHWQGVDPETAARSLAP 180 +++L+ENDQT QGGR++ + + A GMTFD+GNW WQ + AA+ L Sbjct: 122 QSVQLLVENDQTAQGGRIDALQALFAEAETRDLDIGMTFDIGNWLWQTQPVDEAAQRLGR 181 Query: 181 HVRYVHCKGVQDH-KGKLRAVPLQAQD-SHWQEMLAHFPTGILRAIEFPLVGSDLEETTR 238 HVRYVHCK V+ + G+L A+P D W + FP G+ RAIE+PL G DL TR Sbjct: 182 HVRYVHCKAVRHNVDGRLVALPPDEIDLQQWLRLFRQFPVGVPRAIEYPLQGDDLLAVTR 241 Query: 239 RHVAMLA 245 +HV LA Sbjct: 242 QHVETLA 248 >ref|YP_002892986.1| Xylose isomerase domain-containing protein TIM barrel [Tolumonas auensis DSM 9187] gb|ACQ93400.1| Xylose isomerase domain protein TIM barrel [Tolumonas auensis DSM 9187] Length = 249 Score = 199 bits (507), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 103/245 (42%), Positives = 148/245 (60%), Gaps = 1/245 (0%) Query: 4 VLVAASAYGADLVRRVG-HADLVPMVAAAGAAGLEIRRELFDGPQDLPALRELLAQHKLF 62 +++ SAYGAD VR++G A L+PM+ A+GA G+EIR EL L L ++ H LF Sbjct: 5 IVIVTSAYGADTVRQLGGQAALLPMIKASGADGVEIRHELLTPADQLDELASQISTHGLF 64 Query: 63 SVYSAPFELFGAEGRFDREQIALAMSEAEELGARFLKVSLGHFSAASDLQSLLRFLSHSP 122 +VYS P L +G+ + E++AL + A L AR LK+ LG + +DL + + P Sbjct: 65 AVYSVPESLLTDDGQPELERLALHLKNAARLKARTLKLPLGSITNDTDLSGITAVIKSQP 124 Query: 123 IEVLLENDQTPQGGRLEPIVSFLALCTGNGYAFGMTFDMGNWHWQGVDPETAARSLAPHV 182 +++L+ENDQT +GGR+ P+++F + MTFDM NW+W D AAR+LA V Sbjct: 125 VKLLIENDQTVEGGRISPLITFFGMVISQKLPVSMTFDMANWNWLDEDAFVAARALAAQV 184 Query: 183 RYVHCKGVQDHKGKLRAVPLQAQDSHWQEMLAHFPTGILRAIEFPLVGSDLEETTRRHVA 242 YVH K +GK++A+ L D W+++LA PT + R IEFPL G+DL E TR +VA Sbjct: 185 GYVHVKASHTEQGKVKAIALDNSDGSWKDLLAMLPTDVPRGIEFPLEGADLTEVTRYYVA 244 Query: 243 MLAAV 247 L V Sbjct: 245 KLKEV 249 >ref|YP_004354564.1| hypothetical protein PSEBR_c2g65 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gb|AEA69560.1| Conserved hypothetical protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 260 Score = 199 bits (505), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 112/248 (45%), Positives = 153/248 (61%), Gaps = 9/248 (3%) Query: 3 PVLVAASAYGADLVRRVGHADLVPMVAAAGAAGLEIRRELFDGPQDLPALRELLAQHK-- 60 PV ++ S+YGADLVR+ G + ++AAAGA+ +E R EL Q PA EL A+ + Sbjct: 5 PVSISLSSYGADLVRQQGQGSFIDLLAAAGASRIEWREELLTTEQ--PA--ELAARARAQ 60 Query: 61 -LFSVYSAPFELFGAEGRFDREQIALAMSEAEELGARFLKVSLGHFSAASDLQSLLRFLS 119 L S++S+P EL+ A +AL + +E G+ +LKVSLGHF+ + DL +L L Sbjct: 61 GLQSIFSSPLELWLAGQSRPNPALALTLQRSEAFGSAWLKVSLGHFTDSHDLSALADVLG 120 Query: 120 HSPIEVLLENDQTPQGGRLEPIVSFLALCTGNGYAFGMTFDMGNWHWQGVDPETAARSLA 179 SP+++L+ENDQT QGGR+EP+ F + + GMTFD+GNW WQ AAR L Sbjct: 121 ASPVQLLVENDQTLQGGRIEPLQRFFSAAEAHALPVGMTFDIGNWQWQDQSAAVAARQLG 180 Query: 180 PHVRYVHCKGV-QDHKGKLRAVPLQAQDSH-WQEMLAHFPTGILRAIEFPLVGSDLEETT 237 +V YVHCK V Q GKL AVP D H W+++L H P G++RA E+PL G DL + T Sbjct: 181 RYVAYVHCKAVAQRADGKLVAVPPAMTDLHLWEQLLKHMPVGVMRAAEYPLQGEDLLQLT 240 Query: 238 RRHVAMLA 245 HVA L+ Sbjct: 241 AGHVATLS 248