BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0036.p (216 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774920.1| amino acid ABC transporter permease [Herbasp... 429 e-118 ref|YP_841321.1| ABC transporter permease [Ralstonia eutropha H1... 299 2e-79 ref|YP_001525533.1| amino acid ABC transporter permease [Azorhiz... 287 7e-76 ref|YP_004681938.1| ABC transporter permease [Cupriavidus necato... 286 1e-75 ref|YP_002824433.1| ABC transporter permease [Sinorhizobium fred... 286 1e-75 ref|YP_002540512.1| amino acid ABC transporter [Agrobacterium ra... 282 2e-74 ref|YP_004442982.1| amino acid ABC transporter membrane spanning... 281 4e-74 ref|YP_001417339.1| polar amino acid ABC transporter inner membr... 280 8e-74 ref|ZP_08528169.1| ABC transporter, membrane spanning protein (a... 280 8e-74 gb|EGP56233.1| ABC transporter, membrane spanning protein (amino... 278 3e-73 >ref|YP_003774920.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ63012.1| ABC-type amino acid transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 216 Score = 429 bits (1103), Expect = e-118, Method: Compositional matrix adjust. Identities = 216/216 (100%), Positives = 216/216 (100%) Query: 1 MLAEFSFDNFVFLLEAARWTLLLSALAFLGGGIAGFIVALMRTSHLAPLRLLSAVYIQII 60 MLAEFSFDNFVFLLEAARWTLLLSALAFLGGGIAGFIVALMRTSHLAPLRLLSAVYIQII Sbjct: 1 MLAEFSFDNFVFLLEAARWTLLLSALAFLGGGIAGFIVALMRTSHLAPLRLLSAVYIQII 60 Query: 61 QGTPVLILLFLSFYGLAIFGYKLPPMVAATIAMTIYSSAYLGEIWRGCIEAVPVPQWEAS 120 QGTPVLILLFLSFYGLAIFGYKLPPMVAATIAMTIYSSAYLGEIWRGCIEAVPVPQWEAS Sbjct: 61 QGTPVLILLFLSFYGLAIFGYKLPPMVAATIAMTIYSSAYLGEIWRGCIEAVPVPQWEAS 120 Query: 121 TALAMTRWQQLRYVILPQAVRISLPPTVGFLVQIVKNTSIASIIGLVELAQAGKLVSNAT 180 TALAMTRWQQLRYVILPQAVRISLPPTVGFLVQIVKNTSIASIIGLVELAQAGKLVSNAT Sbjct: 121 TALAMTRWQQLRYVILPQAVRISLPPTVGFLVQIVKNTSIASIIGLVELAQAGKLVSNAT 180 Query: 181 FQPFLVFPIVAGIYFVFCYPLSRFAFALERKYHAHR 216 FQPFLVFPIVAGIYFVFCYPLSRFAFALERKYHAHR Sbjct: 181 FQPFLVFPIVAGIYFVFCYPLSRFAFALERKYHAHR 216 >ref|YP_841321.1| ABC transporter permease [Ralstonia eutropha H16] emb|CAJ96591.1| ABC-type transporter, permease component: PAAT family [Ralstonia eutropha H16] Length = 216 Score = 299 bits (766), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 145/216 (67%), Positives = 179/216 (82%) Query: 1 MLAEFSFDNFVFLLEAARWTLLLSALAFLGGGIAGFIVALMRTSHLAPLRLLSAVYIQII 60 M+ EFS+++ LL AARWTL ++ LAF+GG +AGF+VAL RTS LRL S YIQ++ Sbjct: 1 MITEFSWNHLEILLLAARWTLWVTLLAFVGGTLAGFLVALARTSRSPMLRLASTAYIQVV 60 Query: 61 QGTPVLILLFLSFYGLAIFGYKLPPMVAATIAMTIYSSAYLGEIWRGCIEAVPVPQWEAS 120 QGTPVLI+LFLS+YGL++ G KL PMVAA +AM+IY+SAYLGEIWRGCIEAVP QWEAS Sbjct: 61 QGTPVLIVLFLSYYGLSVLGLKLSPMVAAMLAMSIYASAYLGEIWRGCIEAVPQGQWEAS 120 Query: 121 TALAMTRWQQLRYVILPQAVRISLPPTVGFLVQIVKNTSIASIIGLVELAQAGKLVSNAT 180 ALA+TRWQQLRYV+LPQAVR++LPPTVGF VQ+VKNTSI SIIG++EL +AG+L++NAT Sbjct: 121 EALALTRWQQLRYVVLPQAVRLALPPTVGFSVQLVKNTSITSIIGVIELTRAGQLINNAT 180 Query: 181 FQPFLVFPIVAGIYFVFCYPLSRFAFALERKYHAHR 216 FQPF VF +VA IYF C+PLS A +ER+ H +R Sbjct: 181 FQPFAVFVVVALIYFALCFPLSAAARRMERRLHVNR 216 >ref|YP_001525533.1| amino acid ABC transporter permease [Azorhizobium caulinodans ORS 571] dbj|BAF88615.1| amino acid ABC transporter, permease protein [Azorhizobium caulinodans ORS 571] Length = 219 Score = 287 bits (735), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 137/213 (64%), Positives = 174/213 (81%) Query: 1 MLAEFSFDNFVFLLEAARWTLLLSALAFLGGGIAGFIVALMRTSHLAPLRLLSAVYIQII 60 ++ F ++F+FLLE+ RWTL+L+A+A GGIAG +AL R S L PLRL +A YIQII Sbjct: 2 LVRSFGLNDFIFLLESLRWTLVLTAIALTLGGIAGLFIALARVSPLMPLRLATAAYIQII 61 Query: 61 QGTPVLILLFLSFYGLAIFGYKLPPMVAATIAMTIYSSAYLGEIWRGCIEAVPVPQWEAS 120 QG+PVL++LFLS+YGL++ G++LP +VAA+I+M+IY S YLG+IWRGCIEAVP PQWEAS Sbjct: 62 QGSPVLMILFLSYYGLSLIGFQLPALVAASISMSIYVSGYLGDIWRGCIEAVPKPQWEAS 121 Query: 121 TALAMTRWQQLRYVILPQAVRISLPPTVGFLVQIVKNTSIASIIGLVELAQAGKLVSNAT 180 L MTR QQ R++ILPQA+RI+LPPT GF VQ+VKNTSI SIIG VEL++AG+L++N+T Sbjct: 122 ECLGMTRVQQFRHIILPQALRIALPPTTGFAVQVVKNTSITSIIGFVELSRAGQLINNST 181 Query: 181 FQPFLVFPIVAGIYFVFCYPLSRFAFALERKYH 213 FQPF VF VA IYFV CYPLSR + LERK + Sbjct: 182 FQPFRVFLTVAAIYFVICYPLSRLSGWLERKLN 214 >ref|YP_004681938.1| ABC transporter permease [Cupriavidus necator N-1] gb|AEI80706.1| ABC transport system permease protein PAAT family [Cupriavidus necator N-1] Length = 216 Score = 286 bits (733), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 143/216 (66%), Positives = 180/216 (83%) Query: 1 MLAEFSFDNFVFLLEAARWTLLLSALAFLGGGIAGFIVALMRTSHLAPLRLLSAVYIQII 60 M+ EFS+++ LL AARWTL ++ LAF+GG +AGF+VAL RTS LRL S YIQ++ Sbjct: 1 MITEFSWNHLEILLLAARWTLWVTLLAFVGGTLAGFLVALARTSRSPLLRLASTAYIQVV 60 Query: 61 QGTPVLILLFLSFYGLAIFGYKLPPMVAATIAMTIYSSAYLGEIWRGCIEAVPVPQWEAS 120 QGTPVLI+LFLS+YGL++ G KL PMVAA +AM+IY+SAYLGEIWRGCIEAVP QWEAS Sbjct: 61 QGTPVLIVLFLSYYGLSVLGLKLSPMVAAMLAMSIYASAYLGEIWRGCIEAVPQGQWEAS 120 Query: 121 TALAMTRWQQLRYVILPQAVRISLPPTVGFLVQIVKNTSIASIIGLVELAQAGKLVSNAT 180 ALA+TRWQQLR+V+LPQAVR++LPPTVGF VQ+VKNTSI SIIG++EL +AG+L++NAT Sbjct: 121 EALALTRWQQLRHVVLPQAVRLALPPTVGFSVQLVKNTSITSIIGVIELTRAGQLINNAT 180 Query: 181 FQPFLVFPIVAGIYFVFCYPLSRFAFALERKYHAHR 216 FQPF VF +VA +YF C+PLS A +ER++H +R Sbjct: 181 FQPFAVFVVVALVYFALCFPLSAAARRMERRFHVNR 216 >ref|YP_002824433.1| ABC transporter permease [Sinorhizobium fredii NGR234] gb|ACP23680.1| putative permease component of ABC transporter [Sinorhizobium fredii NGR234] Length = 219 Score = 286 bits (733), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 139/213 (65%), Positives = 172/213 (80%) Query: 2 LAEFSFDNFVFLLEAARWTLLLSALAFLGGGIAGFIVALMRTSHLAPLRLLSAVYIQIIQ 61 L F D F FLL + +WT+LL+ +A +GGG+ GF VAL RTS L P+R+ +A YIQIIQ Sbjct: 3 LKTFGLDQFGFLLFSLQWTILLTVIALIGGGLLGFAVALARTSQLKPVRIAAASYIQIIQ 62 Query: 62 GTPVLILLFLSFYGLAIFGYKLPPMVAATIAMTIYSSAYLGEIWRGCIEAVPVPQWEAST 121 G PVL++LFLS+YGL++ G++LPP++AA +MTIY+S YL EIWRGCI+AVP QWEAS Sbjct: 63 GIPVLMILFLSYYGLSLAGFELPPLIAAGASMTIYASGYLAEIWRGCIQAVPKQQWEASE 122 Query: 122 ALAMTRWQQLRYVILPQAVRISLPPTVGFLVQIVKNTSIASIIGLVELAQAGKLVSNATF 181 +LAMTR QQ RYVILPQA+RI LPPTVGF VQ+VKNTSI SIIG VELA+AG+L++NATF Sbjct: 123 SLAMTRLQQYRYVILPQAMRICLPPTVGFAVQVVKNTSITSIIGFVELARAGQLINNATF 182 Query: 182 QPFLVFPIVAGIYFVFCYPLSRFAFALERKYHA 214 QPF VF VA +YFV CYPLS+ + LER+ HA Sbjct: 183 QPFRVFLAVAALYFVVCYPLSQLSRLLERRLHA 215 >ref|YP_002540512.1| amino acid ABC transporter [Agrobacterium radiobacter K84] gb|ACM28917.1| amino acid ABC transporter [Agrobacterium radiobacter K84] Length = 219 Score = 282 bits (722), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 135/213 (63%), Positives = 172/213 (80%) Query: 2 LAEFSFDNFVFLLEAARWTLLLSALAFLGGGIAGFIVALMRTSHLAPLRLLSAVYIQIIQ 61 L F + F FLL++ +WT++L+ +A +GGG+ GF VAL RTS + +R+ + YIQ+IQ Sbjct: 3 LRTFGINEFTFLLQSLQWTVVLTIIALIGGGLLGFAVALARTSSIKAVRIAAGTYIQVIQ 62 Query: 62 GTPVLILLFLSFYGLAIFGYKLPPMVAATIAMTIYSSAYLGEIWRGCIEAVPVPQWEAST 121 G PVL++LFLS+YGL++ G++LPP++AA +MTIY+S YL EIWRGCI+AVP QWEAS Sbjct: 63 GIPVLMILFLSYYGLSLAGFELPPLIAAGASMTIYASGYLAEIWRGCIQAVPKQQWEASE 122 Query: 122 ALAMTRWQQLRYVILPQAVRISLPPTVGFLVQIVKNTSIASIIGLVELAQAGKLVSNATF 181 +LAMTR QQ RYVILPQAVRISLPPTVGF VQ+VKNTSI SIIG VELA+AG+L++NATF Sbjct: 123 SLAMTRLQQYRYVILPQAVRISLPPTVGFAVQVVKNTSITSIIGFVELARAGQLINNATF 182 Query: 182 QPFLVFPIVAGIYFVFCYPLSRFAFALERKYHA 214 QPF VF VA +YFV CYPLS+ + LER+ HA Sbjct: 183 QPFRVFIAVAALYFVVCYPLSQLSRWLERRLHA 215 >ref|YP_004442982.1| amino acid ABC transporter membrane spanning protein [Agrobacterium sp. H13-3] gb|ADY65891.1| amino acid ABC transporter, membrane spanning protein [Agrobacterium sp. H13-3] Length = 219 Score = 281 bits (719), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 137/213 (64%), Positives = 172/213 (80%) Query: 2 LAEFSFDNFVFLLEAARWTLLLSALAFLGGGIAGFIVALMRTSHLAPLRLLSAVYIQIIQ 61 L F ++ F FLL A +WT+LL+ +A +GGG+ GF VAL RTS L LR+ + YIQ+IQ Sbjct: 3 LRTFGWNEFGFLLTALQWTVLLTIIALIGGGLVGFFVALARTSDLKALRIAAGTYIQVIQ 62 Query: 62 GTPVLILLFLSFYGLAIFGYKLPPMVAATIAMTIYSSAYLGEIWRGCIEAVPVPQWEAST 121 G PVL++LFLS+YGL++ G +LPP++AA +MTIY+S YL EIWRGCI+AVP QWEAS Sbjct: 63 GIPVLMILFLSYYGLSLAGLELPPLIAAGASMTIYTSGYLAEIWRGCIQAVPKQQWEASE 122 Query: 122 ALAMTRWQQLRYVILPQAVRISLPPTVGFLVQIVKNTSIASIIGLVELAQAGKLVSNATF 181 +LA+TR QQ RYVILPQA+RISLPPTVGF VQ+VKNTSIASIIG VELA+AG+L++NATF Sbjct: 123 SLALTRAQQYRYVILPQAIRISLPPTVGFAVQVVKNTSIASIIGFVELARAGQLINNATF 182 Query: 182 QPFLVFPIVAGIYFVFCYPLSRFAFALERKYHA 214 QPF VF VA +YF+ CYPLS+ + LER+ HA Sbjct: 183 QPFRVFVAVAVLYFIVCYPLSQLSRWLERRLHA 215 >ref|YP_001417339.1| polar amino acid ABC transporter inner membrane subunit [Xanthobacter autotrophicus Py2] gb|ABS67682.1| polar amino acid ABC transporter, inner membrane subunit [Xanthobacter autotrophicus Py2] Length = 219 Score = 280 bits (717), Expect = 8e-74, Method: Compositional matrix adjust. Identities = 133/212 (62%), Positives = 174/212 (82%) Query: 2 LAEFSFDNFVFLLEAARWTLLLSALAFLGGGIAGFIVALMRTSHLAPLRLLSAVYIQIIQ 61 L F + F FLLE+ +WTL L+ LA +GGGIAGF+VALMRT+ + LR+ + VYIQ++Q Sbjct: 3 LRSFGLNEFYFLLESLQWTLALTGLAMVGGGIAGFLVALMRTARTSALRIAAGVYIQVVQ 62 Query: 62 GTPVLILLFLSFYGLAIFGYKLPPMVAATIAMTIYSSAYLGEIWRGCIEAVPVPQWEAST 121 G PVL++LFLS+YGL++ GY+LP +VAA ++M+IY+S YLGEIWRGCI+AVP PQWE+ Sbjct: 63 GIPVLMILFLSYYGLSLAGYQLPAIVAAGLSMSIYASGYLGEIWRGCIQAVPKPQWESGE 122 Query: 122 ALAMTRWQQLRYVILPQAVRISLPPTVGFLVQIVKNTSIASIIGLVELAQAGKLVSNATF 181 +LA+T QQ Y+ILPQA+RISLPPTVGFLVQ+VKNTSIA++IG VEL +AG+L++NATF Sbjct: 123 SLALTIPQQYLYIILPQAIRISLPPTVGFLVQLVKNTSIAALIGFVELTRAGQLINNATF 182 Query: 182 QPFLVFPIVAGIYFVFCYPLSRFAFALERKYH 213 QPF VF VA +YFV CYP+S+ + LER+ H Sbjct: 183 QPFRVFLTVAALYFVICYPMSQLSRWLERRLH 214 >ref|ZP_08528169.1| ABC transporter, membrane spanning protein (amino acid) [Agrobacterium sp. ATCC 31749] gb|EGL65032.1| ABC transporter, membrane spanning protein (amino acid) [Agrobacterium sp. ATCC 31749] Length = 219 Score = 280 bits (717), Expect = 8e-74, Method: Compositional matrix adjust. Identities = 136/213 (63%), Positives = 172/213 (80%) Query: 2 LAEFSFDNFVFLLEAARWTLLLSALAFLGGGIAGFIVALMRTSHLAPLRLLSAVYIQIIQ 61 L F ++ F FLL A +WT+LL+ +A +GGGI GF++AL RTS LR+ + YIQ+IQ Sbjct: 3 LRTFGWNEFGFLLTALQWTVLLTIIALIGGGIVGFLIALARTSDNKLLRIAAGTYIQVIQ 62 Query: 62 GTPVLILLFLSFYGLAIFGYKLPPMVAATIAMTIYSSAYLGEIWRGCIEAVPVPQWEAST 121 G PVL++LFLS+YGL++ G +LPP++AA +MTIY+S YL EIWRGCI+AVP QWEAS Sbjct: 63 GIPVLMILFLSYYGLSLAGLELPPLIAAGASMTIYTSGYLAEIWRGCIQAVPKQQWEASE 122 Query: 122 ALAMTRWQQLRYVILPQAVRISLPPTVGFLVQIVKNTSIASIIGLVELAQAGKLVSNATF 181 +LA+TR QQ RYVILPQA+RISLPPTVGF VQ+VKNTSIASIIG VELA+AG+L++NATF Sbjct: 123 SLALTRAQQYRYVILPQAIRISLPPTVGFAVQVVKNTSIASIIGFVELARAGQLINNATF 182 Query: 182 QPFLVFPIVAGIYFVFCYPLSRFAFALERKYHA 214 QPF VF VA +YF+ CYPLS+ + LER+ HA Sbjct: 183 QPFRVFVAVAVLYFIVCYPLSQLSRLLERRLHA 215 >gb|EGP56233.1| ABC transporter, membrane spanning protein (amino acid) [Agrobacterium tumefaciens F2] Length = 219 Score = 278 bits (712), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 136/213 (63%), Positives = 171/213 (80%) Query: 2 LAEFSFDNFVFLLEAARWTLLLSALAFLGGGIAGFIVALMRTSHLAPLRLLSAVYIQIIQ 61 L F ++ F FLL A +WT+LL+ +A +GGGI GF +AL RTS LR+ + YIQ+IQ Sbjct: 3 LRTFGWNEFGFLLTALQWTVLLTIIALIGGGIVGFFIALARTSDNKLLRIAAGTYIQVIQ 62 Query: 62 GTPVLILLFLSFYGLAIFGYKLPPMVAATIAMTIYSSAYLGEIWRGCIEAVPVPQWEAST 121 G PVL++LFLS+YGL++ G +LPP++AA +MTIY+S YL EIWRGCI+AVP QWEAS Sbjct: 63 GIPVLMILFLSYYGLSLAGLELPPLIAAGASMTIYTSGYLAEIWRGCIQAVPKQQWEASE 122 Query: 122 ALAMTRWQQLRYVILPQAVRISLPPTVGFLVQIVKNTSIASIIGLVELAQAGKLVSNATF 181 +LA+TR QQ RYVILPQA+RISLPPTVGF VQ+VKNTSIASIIG VELA+AG+L++NATF Sbjct: 123 SLALTRAQQYRYVILPQAIRISLPPTVGFAVQVVKNTSIASIIGFVELARAGQLINNATF 182 Query: 182 QPFLVFPIVAGIYFVFCYPLSRFAFALERKYHA 214 QPF VF VA +YF+ CYPLS+ + LER+ HA Sbjct: 183 QPFRVFVAVAVLYFIVCYPLSQLSRWLERRLHA 215