BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0035.p (231 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774919.1| amino acid ABC transporter permease [Herbasp... 459 e-127 ref|YP_004681937.1| PAAT family ABC transporter permease [Cupria... 260 1e-67 ref|YP_003777258.1| amino acid ABC transporter permease [Herbasp... 258 4e-67 ref|YP_002540511.1| amino acid ABC transporter [Agrobacterium ra... 244 8e-63 ref|YP_001527321.1| amino acid ABC transporter permease [Azorhiz... 243 1e-62 ref|YP_001415090.1| polar amino acid ABC transporter inner membr... 242 2e-62 gb|EGP56232.1| ABC transporter, membrane spanning protein (amino... 242 3e-62 ref|ZP_08528170.1| ABC transporter, membrane spanning protein (a... 242 3e-62 ref|YP_001525532.1| amino acid ABC transporter permease [Azorhiz... 242 4e-62 ref|YP_001526199.1| amino acid ABC transporter permease [Azorhiz... 241 6e-62 >ref|YP_003774919.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ63011.1| ABC-type amino acid transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 231 Score = 459 bits (1180), Expect = e-127, Method: Compositional matrix adjust. Identities = 231/231 (100%), Positives = 231/231 (100%) Query: 1 MQYDFQFAFIFQHLDQLLVGALLTIRLSALSMICGLAVGIFGAIISIHGSKPARLAVTSY 60 MQYDFQFAFIFQHLDQLLVGALLTIRLSALSMICGLAVGIFGAIISIHGSKPARLAVTSY Sbjct: 1 MQYDFQFAFIFQHLDQLLVGALLTIRLSALSMICGLAVGIFGAIISIHGSKPARLAVTSY 60 Query: 61 VELIRSTPFLVQLFIIFFGLPSIGVQVDANIAALVAMTVNLGAYSTEIVRAGMMAIHPSQ 120 VELIRSTPFLVQLFIIFFGLPSIGVQVDANIAALVAMTVNLGAYSTEIVRAGMMAIHPSQ Sbjct: 61 VELIRSTPFLVQLFIIFFGLPSIGVQVDANIAALVAMTVNLGAYSTEIVRAGMMAIHPSQ 120 Query: 121 IEAAQALAMTRWQVIRHVVLTPALEKVYPALASQFTLMMLASSIVSAISAEELTATANLL 180 IEAAQALAMTRWQVIRHVVLTPALEKVYPALASQFTLMMLASSIVSAISAEELTATANLL Sbjct: 121 IEAAQALAMTRWQVIRHVVLTPALEKVYPALASQFTLMMLASSIVSAISAEELTATANLL 180 Query: 181 DAETFRSFEIYLVVMVLYILLALLFRLAFWLIGLVVFKRRRRLGVARPRRM 231 DAETFRSFEIYLVVMVLYILLALLFRLAFWLIGLVVFKRRRRLGVARPRRM Sbjct: 181 DAETFRSFEIYLVVMVLYILLALLFRLAFWLIGLVVFKRRRRLGVARPRRM 231 >ref|YP_004681937.1| PAAT family ABC transporter permease [Cupriavidus necator N-1] gb|AEI80705.1| ABC transport system permease protein [Cupriavidus necator N-1] Length = 252 Score = 260 bits (664), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 132/217 (60%), Positives = 166/217 (76%) Query: 1 MQYDFQFAFIFQHLDQLLVGALLTIRLSALSMICGLAVGIFGAIISIHGSKPARLAVTSY 60 M Y F++ + LD+ GA +T+ LS S++ G AVG GAI + GS + A +Y Sbjct: 1 MNYQFEWTPVLSQLDRFAEGAAMTLALSFGSILLGTAVGTAGAIAAAFGSPWLQRATRAY 60 Query: 61 VELIRSTPFLVQLFIIFFGLPSIGVQVDANIAALVAMTVNLGAYSTEIVRAGMMAIHPSQ 120 VE IR+TPFL+QLFIIFFGLP++G+Q+DA AA++AMTVNLGAYSTEI+RAG+ A+H SQ Sbjct: 61 VEAIRNTPFLIQLFIIFFGLPTVGLQIDAVTAAVIAMTVNLGAYSTEIIRAGLQAVHRSQ 120 Query: 121 IEAAQALAMTRWQVIRHVVLTPALEKVYPALASQFTLMMLASSIVSAISAEELTATANLL 180 +EAA AL MTRWQ+IRHV L PA EKVYPAL SQFTLMML SS+VS IS EELTA A+ + Sbjct: 121 LEAAAALGMTRWQLIRHVALVPAFEKVYPALTSQFTLMMLTSSVVSTISVEELTAVASQV 180 Query: 181 DAETFRSFEIYLVVMVLYILLALLFRLAFWLIGLVVF 217 D++TFR+FE Y++VM +YI LALL R F LIG +VF Sbjct: 181 DSQTFRTFESYILVMFIYIGLALLLRAMFGLIGNLVF 217 >ref|YP_003777258.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ65350.1| ABC-type amino acid transport system, permease protein [Herbaspirillum seropedicae SmR1] Length = 227 Score = 258 bits (659), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 130/224 (58%), Positives = 170/224 (75%) Query: 1 MQYDFQFAFIFQHLDQLLVGALLTIRLSALSMICGLAVGIFGAIISIHGSKPARLAVTSY 60 M Y F F +F + D+LL+GA LTI+LSALS++ G AVG AI R V +Y Sbjct: 1 MNYTFDFMSVFANWDRLLMGAWLTIQLSALSIVLGFAVGTLCAIAGKSRLALVRGLVLAY 60 Query: 61 VELIRSTPFLVQLFIIFFGLPSIGVQVDANIAALVAMTVNLGAYSTEIVRAGMMAIHPSQ 120 VE+IR+TP LVQ+F++FFGL SIG ++ A AA++A+TVN+GAY+TEI+RAG+ +IHP Q Sbjct: 61 VEIIRNTPLLVQVFLVFFGLASIGWKLSAETAAVIALTVNVGAYTTEIMRAGINSIHPGQ 120 Query: 121 IEAAQALAMTRWQVIRHVVLTPALEKVYPALASQFTLMMLASSIVSAISAEELTATANLL 180 IEAA+ L M+R+ V HVVL PA+E+VYP+L SQF L+MLASSI S ISAEELTATANL+ Sbjct: 121 IEAAECLGMSRFHVYWHVVLLPAVERVYPSLTSQFILLMLASSITSQISAEELTATANLV 180 Query: 181 DAETFRSFEIYLVVMVLYILLALLFRLAFWLIGLVVFKRRRRLG 224 +ETFRSFE+Y V+ V Y++L+ LFR AFW I + F R+R+LG Sbjct: 181 QSETFRSFEVYAVIAVAYLVLSFLFRGAFWAISQIAFVRKRKLG 224 >ref|YP_002540511.1| amino acid ABC transporter [Agrobacterium radiobacter K84] gb|ACM28916.1| amino acid ABC transporter [Agrobacterium radiobacter K84] Length = 234 Score = 244 bits (623), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 128/232 (55%), Positives = 170/232 (73%), Gaps = 4/232 (1%) Query: 1 MQYDFQFAFIFQHLDQLLVGALLTIRLSALSMICGLAVGI-FGAIISIHGSKPARLAVTS 59 M Y FQF+ + Q+ + L G LTIRLS LS+I G A GI ++ S+ G K R V + Sbjct: 1 MSYTFQFSALAQYQGEFLSGLWLTIRLSVLSIILGSAFGIVLASLRSVRG-KWVRFLVDA 59 Query: 60 YVELIRSTPFLVQLFIIFFGLPSIGVQVDANIAALVAMTVNLGAYSTEIVRAGMMAIHPS 119 YVE+IR+TPFLVQLFI++FGLP IG++V A+ AAL+ MT+NL AYSTEI+RAG+ A+H S Sbjct: 60 YVEVIRNTPFLVQLFIVYFGLPGIGLRVGADTAALIGMTINLAAYSTEIIRAGIEAVHKS 119 Query: 120 QIEAAQALAMTRWQVIRHVVLTPALEKVYPALASQFTLMMLASSIVSAISAEELTATANL 179 QIEA +AL TR+Q+ RHV++ PA+ KVYPAL SQF LMMLASSI SAIS EL A+A Sbjct: 120 QIEAGEALGFTRFQIYRHVIIVPAVAKVYPALCSQFVLMMLASSICSAISTHELAASAAF 179 Query: 180 LDAETFRSFEIYLVVMVLYILLALLFRLAFWLIGLVVFKRR--RRLGVARPR 229 ++++T+RSFE+Y+VV ++Y+ LAL+ R L+G+ +F RR RR A P Sbjct: 180 VESQTYRSFEVYIVVTLMYLALALVLRAGLALVGMWLFGRRVARRTITALPE 231 >ref|YP_001527321.1| amino acid ABC transporter permease [Azorhizobium caulinodans ORS 571] dbj|BAF90403.1| amino acid ABC transporter, permease protein [Azorhizobium caulinodans ORS 571] Length = 224 Score = 243 bits (620), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 126/219 (57%), Positives = 162/219 (73%) Query: 1 MQYDFQFAFIFQHLDQLLVGALLTIRLSALSMICGLAVGIFGAIISIHGSKPARLAVTSY 60 M Y FQF +F +LL+GALLTIRLSA++M GL V + A+ G +P R V +Y Sbjct: 1 MNYVFQFGDVFNAWPELLMGALLTIRLSAMAMAIGLVVAVVCALGKTGGPRPVRWLVDTY 60 Query: 61 VELIRSTPFLVQLFIIFFGLPSIGVQVDANIAALVAMTVNLGAYSTEIVRAGMMAIHPSQ 120 VE+IR+TPFLVQ+F+IFFGLP +G+++DAN AAL+AM VN+GAY+TEIVRAG+ IH Q Sbjct: 61 VEVIRNTPFLVQIFLIFFGLPRMGIRLDANEAALLAMVVNIGAYATEIVRAGIETIHKGQ 120 Query: 121 IEAAQALAMTRWQVIRHVVLTPALEKVYPALASQFTLMMLASSIVSAISAEELTATANLL 180 IEA AL + QV ++V+ PAL+ +YPAL SQF L+ML SS+VSAISAEELTA AN L Sbjct: 121 IEAGLALGLKPVQVFTYIVIFPALKAIYPALTSQFILLMLTSSVVSAISAEELTAIANNL 180 Query: 181 DAETFRSFEIYLVVMVLYILLALLFRLAFWLIGLVVFKR 219 A+TFRSFEIY+VV +Y+ ++L+F F LI VF R Sbjct: 181 QAQTFRSFEIYIVVTAMYLAMSLMFAAVFELIYRAVFAR 219 >ref|YP_001415090.1| polar amino acid ABC transporter inner membrane subunit [Xanthobacter autotrophicus Py2] gb|ABS65433.1| polar amino acid ABC transporter, inner membrane subunit [Xanthobacter autotrophicus Py2] Length = 227 Score = 242 bits (618), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 119/226 (52%), Positives = 167/226 (73%) Query: 1 MQYDFQFAFIFQHLDQLLVGALLTIRLSALSMICGLAVGIFGAIISIHGSKPARLAVTSY 60 M Y F FA + + + +G LT++LS ++ + G +G AI G+ + V Y Sbjct: 1 MTYQFDFAALLPYWREFAMGVWLTLQLSFVATVLGFVLGTLCAIGRSDGAPWVKALVACY 60 Query: 61 VELIRSTPFLVQLFIIFFGLPSIGVQVDANIAALVAMTVNLGAYSTEIVRAGMMAIHPSQ 120 VE+IR+TP LVQ+FII+FG+ ++G+ VDAN+AA++A+ VN+GAY++EIVRAG+ +IH SQ Sbjct: 61 VEVIRNTPLLVQIFIIYFGIATLGLHVDANVAAVLALVVNVGAYTSEIVRAGLESIHKSQ 120 Query: 121 IEAAQALAMTRWQVIRHVVLTPALEKVYPALASQFTLMMLASSIVSAISAEELTATANLL 180 +EAA+ L ++R Q HV++ PA+E+VYPAL SQ+ L+MLASSI S ISAEELTA AN + Sbjct: 121 LEAAECLGLSRPQTYWHVIVRPAIERVYPALTSQYVLLMLASSITSQISAEELTAVANRI 180 Query: 181 DAETFRSFEIYLVVMVLYILLALLFRLAFWLIGLVVFKRRRRLGVA 226 ++TFRSFE Y+VV VLY+ L+ + R+AFWL GLVVF RRR+LG A Sbjct: 181 QSDTFRSFETYIVVGVLYLALSFVVRIAFWLFGLVVFVRRRKLGTA 226 >gb|EGP56232.1| ABC transporter, membrane spanning protein (amino acid) [Agrobacterium tumefaciens F2] Length = 234 Score = 242 bits (618), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 125/232 (53%), Positives = 170/232 (73%), Gaps = 4/232 (1%) Query: 1 MQYDFQFAFIFQHLDQLLVGALLTIRLSALSMICGLAVGIF-GAIISIHGSKPARLAVTS 59 M Y FQF + Q+ +++L G LTI+LS LS++ G A GI ++ SI+G R+ V + Sbjct: 1 MSYTFQFGALAQYQNEILNGIWLTIKLSVLSIVLGCAFGILLASLRSINGG-IVRIIVDA 59 Query: 60 YVELIRSTPFLVQLFIIFFGLPSIGVQVDANIAALVAMTVNLGAYSTEIVRAGMMAIHPS 119 YVE+IR+TPFLVQLFI++FGLP +G +V A+ AAL+ MT+NL AYSTEI+RAG+ A+H S Sbjct: 60 YVEVIRNTPFLVQLFIVYFGLPGLGFRVGADTAALIGMTINLAAYSTEIIRAGIEAVHKS 119 Query: 120 QIEAAQALAMTRWQVIRHVVLTPALEKVYPALASQFTLMMLASSIVSAISAEELTATANL 179 QIEA +AL TR+Q+ RHV++ PA+ KVYP+L SQF LMMLASSI SAIS EL A A Sbjct: 120 QIEAGEALGFTRYQIYRHVIIVPAIAKVYPSLCSQFVLMMLASSICSAISTHELAAAAAF 179 Query: 180 LDAETFRSFEIYLVVMVLYILLALLFRLAFWLIGLVVFKRR--RRLGVARPR 229 ++++T+RSFE+Y+VV ++Y+ LAL RL LIG+ +F RR R+ A P Sbjct: 180 VESQTYRSFEVYIVVTLIYLALALSLRLILALIGMWLFGRRVARKTMTAMPE 231 >ref|ZP_08528170.1| ABC transporter, membrane spanning protein (amino acid) [Agrobacterium sp. ATCC 31749] gb|EGL65033.1| ABC transporter, membrane spanning protein (amino acid) [Agrobacterium sp. ATCC 31749] Length = 234 Score = 242 bits (618), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 125/232 (53%), Positives = 170/232 (73%), Gaps = 4/232 (1%) Query: 1 MQYDFQFAFIFQHLDQLLVGALLTIRLSALSMICGLAVGIF-GAIISIHGSKPARLAVTS 59 M Y FQF + Q+ ++LL G LTI+LS LS++ G A GI ++ SI+G R+ V + Sbjct: 1 MSYTFQFGALAQYQNELLSGIWLTIKLSVLSIVLGCAFGILLASLRSINGG-IVRIIVDA 59 Query: 60 YVELIRSTPFLVQLFIIFFGLPSIGVQVDANIAALVAMTVNLGAYSTEIVRAGMMAIHPS 119 YVE+IR+TPFLVQLFI++FGLP +G +V A+ AAL+ MT+NL AYSTEI+RAG+ A+H S Sbjct: 60 YVEVIRNTPFLVQLFIVYFGLPGLGFRVGADTAALIGMTINLAAYSTEIIRAGIEAVHKS 119 Query: 120 QIEAAQALAMTRWQVIRHVVLTPALEKVYPALASQFTLMMLASSIVSAISAEELTATANL 179 QIEA +AL T++Q+ RHV++ PA+ KVYP+L SQF LMMLASSI SAIS EL A A Sbjct: 120 QIEAGEALGFTKYQIYRHVIMVPAIAKVYPSLCSQFVLMMLASSICSAISTHELAAAAAF 179 Query: 180 LDAETFRSFEIYLVVMVLYILLALLFRLAFWLIGLVVFKRR--RRLGVARPR 229 ++++T+RSFE+Y+VV ++Y+ LAL RL LIG+ +F RR R+ A P Sbjct: 180 VESQTYRSFEVYIVVTLIYLALALSLRLILALIGMWLFGRRVARKTMTALPE 231 >ref|YP_001525532.1| amino acid ABC transporter permease [Azorhizobium caulinodans ORS 571] dbj|BAF88614.1| amino acid ABC transporter permease protein [Azorhizobium caulinodans ORS 571] Length = 234 Score = 242 bits (617), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 118/227 (51%), Positives = 173/227 (76%), Gaps = 2/227 (0%) Query: 1 MQYDFQFAFIFQHLDQLLVGALLTIRLSALSMICGLAVGI-FGAIISIHGSKPARLAVTS 59 + Y FQF I + D+LL G LLTI+LS S++ GLA+GI ++ +++G R+ + Sbjct: 3 VNYQFQFGVIANYRDELLSGLLLTIQLSVSSIVLGLALGIMLASVRAMYGGLIGRI-IKL 61 Query: 60 YVELIRSTPFLVQLFIIFFGLPSIGVQVDANIAALVAMTVNLGAYSTEIVRAGMMAIHPS 119 YVE++R+TPFLVQLFIIFFGLP +GV+VDA AAL+ MT+NLGAY+TEI+RAG+ A+H S Sbjct: 62 YVEVVRNTPFLVQLFIIFFGLPVLGVRVDATAAALIGMTINLGAYTTEIIRAGIDAVHRS 121 Query: 120 QIEAAQALAMTRWQVIRHVVLTPALEKVYPALASQFTLMMLASSIVSAISAEELTATANL 179 Q+EA Q+L MT +Q+ RH+++ PA+ KVYPAL SQF LM LASS+ SAISAEEL++ Sbjct: 122 QVEAGQSLGMTTYQIYRHIIIPPAIAKVYPALCSQFILMTLASSVCSAISAEELSSVTAQ 181 Query: 180 LDAETFRSFEIYLVVMVLYILLALLFRLAFWLIGLVVFKRRRRLGVA 226 ++++++RSFE+Y++ ++Y+ L+++ R F L+G +FKRR +L +A Sbjct: 182 IESQSYRSFEVYVIATLIYLALSMVLRGIFALVGWYLFKRRPKLKLA 228 >ref|YP_001526199.1| amino acid ABC transporter permease [Azorhizobium caulinodans ORS 571] dbj|BAF89281.1| amino acid ABC transporter permease protein [Azorhizobium caulinodans ORS 571] Length = 227 Score = 241 bits (615), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 119/226 (52%), Positives = 165/226 (73%) Query: 1 MQYDFQFAFIFQHLDQLLVGALLTIRLSALSMICGLAVGIFGAIISIHGSKPARLAVTSY 60 M Y F FA + + +G LT++LS +S + G +G AI G + V +Y Sbjct: 1 MTYQFDFAVLLPFWREFAMGVWLTLQLSLISTVLGFILGTLCAIGRADGPPWVKFLVATY 60 Query: 61 VELIRSTPFLVQLFIIFFGLPSIGVQVDANIAALVAMTVNLGAYSTEIVRAGMMAIHPSQ 120 VE+IR+TP LVQ+FI++FG+ ++G+ V AN+AA++A+ VN+GAY++EIVRAG+ +IH SQ Sbjct: 61 VEIIRNTPLLVQVFIVYFGIATLGIHVSANLAAVLALVVNVGAYTSEIVRAGLESIHKSQ 120 Query: 121 IEAAQALAMTRWQVIRHVVLTPALEKVYPALASQFTLMMLASSIVSAISAEELTATANLL 180 +EAA+ L ++R Q HV++ PA+E+VYPAL SQ+ L+MLASSI S ISAEELTA AN + Sbjct: 121 LEAAECLGLSRPQTYWHVIVRPAIERVYPALTSQYVLLMLASSITSQISAEELTAVANRI 180 Query: 181 DAETFRSFEIYLVVMVLYILLALLFRLAFWLIGLVVFKRRRRLGVA 226 ++TFRSFE Y+VV VLY+ L+ + RLAFWL GLVVF RRR+LG A Sbjct: 181 QSDTFRSFETYIVVGVLYLALSFVVRLAFWLFGLVVFVRRRKLGTA 226