BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0025.p (272 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774909.1| nitrate/sulfonate/bicarbonate ABC transporte... 494 e-138 ref|YP_004405275.1| nitrate/sulfonate/bicarbonate ABC transporte... 301 6e-80 ref|YP_004008976.1| ABC transporter transmembrane protein [Rhodo... 282 5e-74 ref|ZP_08512065.1| ABC transporter, permease protein [Paenibacil... 240 2e-61 ref|ZP_08282103.1| ABC transporter, permease protein [Paenibacil... 234 1e-59 ref|ZP_07900666.1| binding-protein-dependent transport systems i... 234 1e-59 ref|YP_003243648.1| binding-protein-dependent transport systems ... 234 1e-59 dbj|BAK15713.1| ABC-type nitrate/sulfonate/bicarbonate transport... 230 2e-58 ref|YP_004643390.1| binding-protein-dependent transport systems ... 229 3e-58 ref|YP_003013793.1| binding-protein-dependent transporters inner... 224 1e-56 >ref|YP_003774909.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ63001.1| ABC-type nitrate/sulfonate/bicarbonate transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 256 Score = 494 bits (1273), Expect = e-138, Method: Compositional matrix adjust. Identities = 256/256 (100%), Positives = 256/256 (100%) Query: 17 MPSNLGRRLKAARPFLISVIAIVGGLVLWQLVSLTTSPLFLPSVSMTWAAALELISDGTL 76 MPSNLGRRLKAARPFLISVIAIVGGLVLWQLVSLTTSPLFLPSVSMTWAAALELISDGTL Sbjct: 1 MPSNLGRRLKAARPFLISVIAIVGGLVLWQLVSLTTSPLFLPSVSMTWAAALELISDGTL 60 Query: 77 QQSVLASSGRILAGWGAGVVIGVPLGIFMGRFETVRQLLDPYIEFFRFIPPIAFVTLAVI 136 QQSVLASSGRILAGWGAGVVIGVPLGIFMGRFETVRQLLDPYIEFFRFIPPIAFVTLAVI Sbjct: 61 QQSVLASSGRILAGWGAGVVIGVPLGIFMGRFETVRQLLDPYIEFFRFIPPIAFVTLAVI 120 Query: 137 WLGPGELSKIALIFYTTVFIVTLNTIAGVQAVNPLRLRAAASLGAGQWKILSTVILPSTV 196 WLGPGELSKIALIFYTTVFIVTLNTIAGVQAVNPLRLRAAASLGAGQWKILSTVILPSTV Sbjct: 121 WLGPGELSKIALIFYTTVFIVTLNTIAGVQAVNPLRLRAAASLGAGQWKILSTVILPSTV 180 Query: 197 PFMVTGARIAMGNSFLTVVSAEIVSAREGLGALIWTARNFSRTEWVFVGIIALGILGYLF 256 PFMVTGARIAMGNSFLTVVSAEIVSAREGLGALIWTARNFSRTEWVFVGIIALGILGYLF Sbjct: 181 PFMVTGARIAMGNSFLTVVSAEIVSAREGLGALIWTARNFSRTEWVFVGIIALGILGYLF 240 Query: 257 DRVLRVATRKLLARYL 272 DRVLRVATRKLLARYL Sbjct: 241 DRVLRVATRKLLARYL 256 >ref|YP_004405275.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Verrucosispora maris AB-18-032] gb|AEB44675.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Verrucosispora maris AB-18-032] Length = 276 Score = 301 bits (772), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 153/235 (65%), Positives = 192/235 (81%), Gaps = 4/235 (1%) Query: 27 AARPFL----ISVIAIVGGLVLWQLVSLTTSPLFLPSVSMTWAAALELISDGTLQQSVLA 82 +A+P L +SV+++ G+++W LVS + FLPS +TW A++L+ DGTL SV A Sbjct: 24 SAKPRLTRIGLSVLSVALGILVWDLVSRNYTAFFLPSPMLTWQGAVDLVRDGTLWDSVTA 83 Query: 83 SSGRILAGWGAGVVIGVPLGIFMGRFETVRQLLDPYIEFFRFIPPIAFVTLAVIWLGPGE 142 SS RIL GW GVVIGVP+G+ MG +R +LDPYI+FFRF+PPIAFVTLA+IWLGPGE Sbjct: 84 SSTRILTGWALGVVIGVPVGLLMGCIPWLRLMLDPYIQFFRFVPPIAFVTLAIIWLGPGE 143 Query: 143 LSKIALIFYTTVFIVTLNTIAGVQAVNPLRLRAAASLGAGQWKILSTVILPSTVPFMVTG 202 SK+ALIFYTTVFIV LNT+AGV AV+ LRLRAA +LGA + L +V+LPSTVP +VTG Sbjct: 144 ASKVALIFYTTVFIVALNTLAGVLAVDDLRLRAARALGASPLRTLVSVVLPSTVPHVVTG 203 Query: 203 ARIAMGNSFLTVVSAEIVSAREGLGALIWTARNFSRTEWVFVGIIALGILGYLFD 257 AR+AMGNSFLT+VSAEIV+A+ GLG+LIWTARN+++TEWVFVGI+ALG+LGYLFD Sbjct: 204 ARLAMGNSFLTIVSAEIVAAQSGLGSLIWTARNYAKTEWVFVGILALGLLGYLFD 258 >ref|YP_004008976.1| ABC transporter transmembrane protein [Rhodococcus equi 103S] ref|ZP_08152796.1| nitrate/sulfonate/bicarbonate ABC superfamily ATP binding cassette transporter, permease protein [Rhodococcus equi ATCC 33707] emb|CBH50298.1| putative ABC transporter integral membrane subunit [Rhodococcus equi 103S] gb|EGD26023.1| nitrate/sulfonate/bicarbonate ABC superfamily ATP binding cassette transporter, permease protein [Rhodococcus equi ATCC 33707] Length = 277 Score = 282 bits (721), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 141/250 (56%), Positives = 186/250 (74%) Query: 22 GRRLKAARPFLISVIAIVGGLVLWQLVSLTTSPLFLPSVSMTWAAALELISDGTLQQSVL 81 G AAR L+ + + GL +W ++ P + S + W AA EL G L S+ Sbjct: 25 GASTAAARTALLWIASAAIGLAVWSFLAWWYGPTTIASPAEVWTAAKELAESGVLWTSIW 84 Query: 82 ASSGRILAGWGAGVVIGVPLGIFMGRFETVRQLLDPYIEFFRFIPPIAFVTLAVIWLGPG 141 AS+ RIL GW GVVIG P+GI MGR VRQLLDPYIEFFRFIPPIAFVTLAV+W G G Sbjct: 85 ASAQRILIGWSLGVVIGAPIGILMGRVNIVRQLLDPYIEFFRFIPPIAFVTLAVVWFGIG 144 Query: 142 ELSKIALIFYTTVFIVTLNTIAGVQAVNPLRLRAAASLGAGQWKILSTVILPSTVPFMVT 201 E SK+ LIFYT+VFIVT++TIA +++ +L+AAA+LGAG+ +++ TV+LPS+VP ++T Sbjct: 145 ETSKVVLIFYTSVFIVTVSTIAATVSISDNKLQAAANLGAGKLQLMKTVVLPSSVPGIIT 204 Query: 202 GARIAMGNSFLTVVSAEIVSAREGLGALIWTARNFSRTEWVFVGIIALGILGYLFDRVLR 261 GAR+AMGNSFLT+VSAEIV+A G+G++IW ARN+ R +W FVGII LGI+G++FDR+LR Sbjct: 205 GARLAMGNSFLTIVSAEIVAADHGIGSMIWQARNYGRIDWTFVGIIVLGIMGFVFDRILR 264 Query: 262 VATRKLLARY 271 + + + LARY Sbjct: 265 LLSTRYLARY 274 >ref|ZP_08512065.1| ABC transporter, permease protein [Paenibacillus sp. HGF7] gb|EGL15224.1| ABC transporter, permease protein [Paenibacillus sp. HGF7] Length = 285 Score = 240 bits (612), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 114/240 (47%), Positives = 170/240 (70%) Query: 32 LISVIAIVGGLVLWQLVSLTTSPLFLPSVSMTWAAALELISDGTLQQSVLASSGRILAGW 91 L++++ + GL+LW +SL P LP +T EL++DGTL Q + SS R+L GW Sbjct: 36 LLTLVFWIAGLLLWHGLSLVYGPEILPGPILTAEGGYELLADGTLLQYIGISSYRVLLGW 95 Query: 92 GAGVVIGVPLGIFMGRFETVRQLLDPYIEFFRFIPPIAFVTLAVIWLGPGELSKIALIFY 151 G +I +P+G+ +G+ + +R +P++ F RFIPPIAF+TL ++W G GE SK+ LI Y Sbjct: 96 TLGSLIAIPVGLVIGKVDAIRAFAEPFLNFIRFIPPIAFITLFLVWFGIGETSKVVLILY 155 Query: 152 TTVFIVTLNTIAGVQAVNPLRLRAAASLGAGQWKILSTVILPSTVPFMVTGARIAMGNSF 211 T FIV LNT+ GV AV ++R+A S+GA +W+I+ VI+PSTVP+M TG R+AMG SF Sbjct: 156 ATFFIVVLNTLTGVLAVEEDKIRSARSMGASEWQIVLHVIIPSTVPYMFTGIRLAMGTSF 215 Query: 212 LTVVSAEIVSAREGLGALIWTARNFSRTEWVFVGIIALGILGYLFDRVLRVATRKLLARY 271 + ++ AE++++ EG+G LIW +R F RT+W+FVG+I LG++G++ DR + + RKLLARY Sbjct: 216 MAIIGAEMIASNEGVGYLIWNSRLFFRTDWIFVGLICLGLMGFITDRAVALLGRKLLARY 275 >ref|ZP_08282103.1| ABC transporter, permease protein [Paenibacillus sp. HGF5] gb|EGG34433.1| ABC transporter, permease protein [Paenibacillus sp. HGF5] Length = 258 Score = 234 bits (597), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 112/231 (48%), Positives = 162/231 (70%) Query: 41 GLVLWQLVSLTTSPLFLPSVSMTWAAALELISDGTLQQSVLASSGRILAGWGAGVVIGVP 100 GL +W L+SL P LP T EL++DGTL Q + SS R+L GW G ++ +P Sbjct: 18 GLGVWHLLSLAYGPEILPGPVYTAKGGYELLTDGTLIQYIGISSYRVLLGWTFGSLLAIP 77 Query: 101 LGIFMGRFETVRQLLDPYIEFFRFIPPIAFVTLAVIWLGPGELSKIALIFYTTVFIVTLN 160 +GI +G+ +R +P++ F RFIPPIAF+TL ++W G GE SKI LI Y T FIV LN Sbjct: 78 VGIMIGKVGPIRAFAEPFLNFIRFIPPIAFITLFLVWFGIGETSKIMLILYATFFIVVLN 137 Query: 161 TIAGVQAVNPLRLRAAASLGAGQWKILSTVILPSTVPFMVTGARIAMGNSFLTVVSAEIV 220 T+ GV +V ++R+A S+GA +W+I+ V++P+TVPFM TG R+AMG SF+ ++ AE++ Sbjct: 138 TLTGVLSVEEDKIRSARSMGASEWQIVLHVVIPATVPFMFTGIRLAMGTSFMAIIGAEMI 197 Query: 221 SAREGLGALIWTARNFSRTEWVFVGIIALGILGYLFDRVLRVATRKLLARY 271 ++ EG+G LIW +R F RT+W+FVG+I LG++G+L DR + + RKLL+RY Sbjct: 198 ASNEGVGYLIWNSRLFFRTDWIFVGLICLGLMGFLTDRAVGLLGRKLLSRY 248 >ref|ZP_07900666.1| binding-protein-dependent transport systems inner membrane component [Paenibacillus vortex V453] gb|EFU40344.1| binding-protein-dependent transport systems inner membrane component [Paenibacillus vortex V453] Length = 243 Score = 234 bits (597), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 113/231 (48%), Positives = 161/231 (69%) Query: 41 GLVLWQLVSLTTSPLFLPSVSMTWAAALELISDGTLQQSVLASSGRILAGWGAGVVIGVP 100 GL +WQL+SL P LP T EL+ DGTL Q + SS R+L GW G +I +P Sbjct: 3 GLGIWQLLSLVYGPEILPGPIYTAKGGYELLMDGTLLQYIGISSYRVLLGWTLGSLIAIP 62 Query: 101 LGIFMGRFETVRQLLDPYIEFFRFIPPIAFVTLAVIWLGPGELSKIALIFYTTVFIVTLN 160 G+ +G+ T+R +P++ F RFIPPIAF+TL ++W G GE SK+ LI Y T FIV LN Sbjct: 63 AGLVIGKVGTIRVFAEPFLNFIRFIPPIAFITLFLVWFGIGETSKVMLIMYATFFIVVLN 122 Query: 161 TIAGVQAVNPLRLRAAASLGAGQWKILSTVILPSTVPFMVTGARIAMGNSFLTVVSAEIV 220 T+ GV +V ++R+A S+GA +W+I+ VI+P+TVP+M TG R+AMG SF+ ++ AE++ Sbjct: 123 TLTGVLSVEEDKIRSARSMGASEWQIVLHVIIPATVPYMFTGIRLAMGTSFMAIIGAEMI 182 Query: 221 SAREGLGALIWTARNFSRTEWVFVGIIALGILGYLFDRVLRVATRKLLARY 271 ++ EG+G LIW +R F RT+W+FVG+I LG +G+L DR + + RKLL+RY Sbjct: 183 ASNEGVGYLIWNSRLFFRTDWIFVGLICLGFMGFLTDRAVGLLGRKLLSRY 233 >ref|YP_003243648.1| binding-protein-dependent transport systems inner membrane component [Paenibacillus sp. Y412MC10] gb|ACX65841.1| binding-protein-dependent transport systems inner membrane component [Paenibacillus sp. Y412MC10] Length = 258 Score = 234 bits (596), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 112/231 (48%), Positives = 162/231 (70%) Query: 41 GLVLWQLVSLTTSPLFLPSVSMTWAAALELISDGTLQQSVLASSGRILAGWGAGVVIGVP 100 GL +W L+SL P LP T EL++DGTL Q + SS R+L GW G ++ +P Sbjct: 18 GLGVWHLLSLAYGPEILPGPVYTAKGGYELLTDGTLIQYIGISSYRVLLGWTFGSLLAIP 77 Query: 101 LGIFMGRFETVRQLLDPYIEFFRFIPPIAFVTLAVIWLGPGELSKIALIFYTTVFIVTLN 160 +GI +G+ +R +P++ F RFIPPIAF+TL ++W G GE SKI LI Y T FIV LN Sbjct: 78 VGIMIGKVGPIRVFAEPFLNFIRFIPPIAFITLFLVWFGIGETSKIMLILYATFFIVVLN 137 Query: 161 TIAGVQAVNPLRLRAAASLGAGQWKILSTVILPSTVPFMVTGARIAMGNSFLTVVSAEIV 220 T+ GV +V ++R+A S+GA +W+I+ V++P+TVPFM TG R+AMG SF+ ++ AE++ Sbjct: 138 TLTGVLSVEEDKIRSARSMGASEWQIVLHVVIPATVPFMFTGIRLAMGTSFMAIIGAEMI 197 Query: 221 SAREGLGALIWTARNFSRTEWVFVGIIALGILGYLFDRVLRVATRKLLARY 271 ++ EG+G LIW +R F RT+W+FVG+I LG++G+L DR + + RKLL+RY Sbjct: 198 ASNEGVGYLIWNSRLFFRTDWIFVGLICLGLMGFLTDRAVGLLGRKLLSRY 248 >dbj|BAK15713.1| ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Solibacillus silvestris StLB046] Length = 272 Score = 230 bits (587), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 107/230 (46%), Positives = 168/230 (73%) Query: 42 LVLWQLVSLTTSPLFLPSVSMTWAAALELISDGTLQQSVLASSGRILAGWGAGVVIGVPL 101 L++WQ+ S+ + P+FLPS +T A+E+ SDGTL + S R+LAGW G++I VP Sbjct: 40 LLVWQIASVFSEPMFLPSPYLTLVGAIEIASDGTLFLYMGYSFLRVLAGWTLGLLIAVPF 99 Query: 102 GIFMGRFETVRQLLDPYIEFFRFIPPIAFVTLAVIWLGPGELSKIALIFYTTVFIVTLNT 161 G+ +G + VR L +P I F RFIPP+AF+TL ++W G GE SK+ LI Y T F++T+NT Sbjct: 100 GLLIGTNKFVRALFEPVINFVRFIPPLAFITLFMLWFGIGEQSKVFLIVYATFFVITINT 159 Query: 162 IAGVQAVNPLRLRAAASLGAGQWKILSTVILPSTVPFMVTGARIAMGNSFLTVVSAEIVS 221 + GV +++ +L +A S+GA +++ L V++P+T+P++ TGA++AMG+SF+ +V AE+V+ Sbjct: 160 LTGVLSISNDKLLSAKSMGASKFQTLIYVVIPATIPYIFTGAKLAMGSSFMAIVGAEMVA 219 Query: 222 AREGLGALIWTARNFSRTEWVFVGIIALGILGYLFDRVLRVATRKLLARY 271 A EG+G +IW AR + +T+W+FVG++ LG++G++ DR+ A RKLL RY Sbjct: 220 ANEGIGFMIWNARLYFKTDWIFVGLVVLGLMGFIMDRIFAYAGRKLLGRY 269 >ref|YP_004643390.1| binding-protein-dependent transport systems inner membrane component [Paenibacillus mucilaginosus KNP414] gb|AEI43520.1| binding-protein-dependent transport systems inner membrane component [Paenibacillus mucilaginosus KNP414] Length = 266 Score = 229 bits (585), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 108/231 (46%), Positives = 164/231 (70%) Query: 41 GLVLWQLVSLTTSPLFLPSVSMTWAAALELISDGTLQQSVLASSGRILAGWGAGVVIGVP 100 GL++WQL+SL +SP FLP T A+EL DG+L Q + AS R+ GW G +I +P Sbjct: 18 GLIVWQLLSLASSPDFLPGPYQTLLGAIELSKDGSLWQYMGASLFRVAVGWSLGSLIAIP 77 Query: 101 LGIFMGRFETVRQLLDPYIEFFRFIPPIAFVTLAVIWLGPGELSKIALIFYTTVFIVTLN 160 +G+ MGR +R+L +P++ F RFIPP+AF+TL ++W G GE SKI LI Y+T+FIV LN Sbjct: 78 VGLIMGRVTVIRRLTEPFLNFIRFIPPLAFITLFMLWFGIGEQSKIILILYSTLFIVILN 137 Query: 161 TIAGVQAVNPLRLRAAASLGAGQWKILSTVILPSTVPFMVTGARIAMGNSFLTVVSAEIV 220 T+ GV ++ ++R+A S+GA +W+ + VI+P+TVP+M TG R+AM S++ ++ AE++ Sbjct: 138 TMTGVLSIEEDKIRSARSMGATEWQTMLHVIIPATVPYMFTGVRLAMSTSYMAIIGAEMI 197 Query: 221 SAREGLGALIWTARNFSRTEWVFVGIIALGILGYLFDRVLRVATRKLLARY 271 +A +G+G +IW AR + + +W+FVG+ ALG++GY DR+L +LARY Sbjct: 198 AADKGVGFMIWNARLYFKMDWIFVGLFALGLMGYFTDRLLNWFGSTVLARY 248 >ref|YP_003013793.1| binding-protein-dependent transporters inner membrane component [Paenibacillus sp. JDR-2] gb|ACT03707.1| binding-protein-dependent transport systems inner membrane component [Paenibacillus sp. JDR-2] Length = 259 Score = 224 bits (571), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 103/230 (44%), Positives = 162/230 (70%) Query: 42 LVLWQLVSLTTSPLFLPSVSMTWAAALELISDGTLQQSVLASSGRILAGWGAGVVIGVPL 101 ++WQ+ + P +P + TW A EL+SDG+L + + S R+ AGW G ++ +P+ Sbjct: 19 FIVWQIGAWIYGPEIIPGPAATWQGAQELLSDGSLMKYIGISFYRVFAGWALGSLLAIPI 78 Query: 102 GIFMGRFETVRQLLDPYIEFFRFIPPIAFVTLAVIWLGPGELSKIALIFYTTVFIVTLNT 161 G+ +G+ +R +P++ F RFIPPIAF+TL ++W G GE SKIALI Y T+FIV +NT Sbjct: 79 GLTIGKVTAIRVFAEPFLNFVRFIPPIAFITLFLVWFGIGEQSKIALIMYATLFIVIINT 138 Query: 162 IAGVQAVNPLRLRAAASLGAGQWKILSTVILPSTVPFMVTGARIAMGNSFLTVVSAEIVS 221 + GV A+ R+R+A S+GA +W+IL V++P+T P++ TG R+AMG S++ ++ AE+++ Sbjct: 139 LTGVLAIEEDRIRSARSMGASEWQILLHVVIPATTPYIFTGIRLAMGTSYMAIIGAEMIA 198 Query: 222 AREGLGALIWTARNFSRTEWVFVGIIALGILGYLFDRVLRVATRKLLARY 271 A EG+G LIW +R + RT+W+FVG+I+LG++G+L DR++ KLL RY Sbjct: 199 ANEGVGFLIWNSRLYFRTDWIFVGLISLGLMGFLTDRIVGWLGSKLLFRY 248