BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0014.p         (521 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774899.1| NAD-dependent formate dehydrogenase beta sub...  1055   0.0  
ref|YP_004751540.1| NAD-dependent formate dehydrogenase subunit ...   841   0.0  
ref|YP_001355343.1| NAD-dependent formate dehydrogenase beta sub...   838   0.0  
ref|YP_001101655.1| NAD dependent formate dehydrogenase subunit ...   837   0.0  
ref|YP_004752658.1| NAD-dependent formate dehydrogenase subunit ...   835   0.0  
ref|YP_002944903.1| NADH dehydrogenase (quinone) [Variovorax par...   806   0.0  
ref|ZP_03698685.1| NADH dehydrogenase (quinone) [Lutiella nitrof...   803   0.0  
ref|YP_582709.1| NAD-dependent formate dehydrogenase subunit bet...   801   0.0  
ref|YP_544830.1| NADH dehydrogenase (quinone) [Methylobacillus f...   798   0.0  
ref|YP_725157.1| NAD-dependent formate dehydrogenase beta subuni...   793   0.0  

>ref|YP_003774899.1| NAD-dependent formate dehydrogenase beta subunit [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ62991.1| NAD-dependent formate dehydrogenase beta subunit protein
           [Herbaspirillum seropedicae SmR1]
          Length = 520

 Score = 1055 bits (2729), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 518/520 (99%), Positives = 519/520 (99%)

Query: 2   MSANDTVTVYVPRDSTALALGANEVAAAITAEAHKRGQSIRLVRNGSRGMFWLEPLVEVA 61
           MSANDTVTVYVPRDSTALALGANEVAAAITAEAHKRGQSI+LVRNGSRGMFWLEPLVEVA
Sbjct: 1   MSANDTVTVYVPRDSTALALGANEVAAAITAEAHKRGQSIKLVRNGSRGMFWLEPLVEVA 60

Query: 62  TAAGRVAYGPVAPEDVAGLFDAGLLQGGQHALHLGLTEEIAFLKNQERLTFARVGIIDPL 121
           TAAGRVAYGPVAPEDVAGLFDAGLLQGGQHALHLGLTEEIAFLKNQERLTFARVGIIDPL
Sbjct: 61  TAAGRVAYGPVAPEDVAGLFDAGLLQGGQHALHLGLTEEIAFLKNQERLTFARVGIIDPL 120

Query: 122 SLEDYLAHEGYVGLKNALAKTPEAIVQEMIASGLRGRGGAAFPTGIKWQTVLRAQSAQKY 181
           SLEDYLAHEGYVGLKNALAKTPEAIVQEMIASGLRGRGGAAFPTGIKWQTVLRAQSAQKY
Sbjct: 121 SLEDYLAHEGYVGLKNALAKTPEAIVQEMIASGLRGRGGAAFPTGIKWQTVLRAQSAQKY 180

Query: 182 VVCNADEGDSGTFSDRMIMEDDPFTLIEGMTIAGVAVGATEGYIYVRSEYPHSIATLEQA 241
           VVCNADEGDSGTFSDRMIMEDDPFTLIEGMTIAGVAVGATEGYIYVRSEYPHSIATLEQA
Sbjct: 181 VVCNADEGDSGTFSDRMIMEDDPFTLIEGMTIAGVAVGATEGYIYVRSEYPHSIATLEQA 240

Query: 242 IAIAHAQGYLGDDILGSDKSFRLEVRKGAGAYICGEETAMLESLEGKRGVVRAKPPLPAI 301
           IAIAHAQGYLGDDILGS KSFRLEVRKGAGAYICGEETAMLESLEGKRGVVRAKPPLPAI
Sbjct: 241 IAIAHAQGYLGDDILGSGKSFRLEVRKGAGAYICGEETAMLESLEGKRGVVRAKPPLPAI 300

Query: 302 EGLFGKPTVINNLISLASVPVILARGADFYKNFGVGRSHGTLPFQLAGNIRQGGLVEKAF 361
           EGLFGKPTVINNLISLASVPVILARGADFYKNFGVGRSHGTLPFQLAGNIRQGGLVEKAF
Sbjct: 301 EGLFGKPTVINNLISLASVPVILARGADFYKNFGVGRSHGTLPFQLAGNIRQGGLVEKAF 360

Query: 362 GLTLRQLLEDFGGGSASGRPIRAVQMGGPLGAYLPQSQFDTPLDYEAFAAIGAMIGHGGL 421
           GLTLRQLLEDFGGGSASGRPIRAVQMGGPLGAYLPQSQFDTPLDYEAFAAIGAMIGHGGL
Sbjct: 361 GLTLRQLLEDFGGGSASGRPIRAVQMGGPLGAYLPQSQFDTPLDYEAFAAIGAMIGHGGL 420

Query: 422 VAFDDSVDMARQARYAMQFCAVESCGKCTPCRIGSTRGVEVIDKIIANDDRAQQIHLLKS 481
           VAFDDSVDMARQARYAMQFCAVESCGKCTPCRIGSTRGVEVIDKIIANDDRAQQIHLLKS
Sbjct: 421 VAFDDSVDMARQARYAMQFCAVESCGKCTPCRIGSTRGVEVIDKIIANDDRAQQIHLLKS 480

Query: 482 LCDTMVNGSLCAMGGMTPFPVLSALNHFPEDFGAPSEQAA 521
           LCDTMVNGSLCAMGGMTPFPVLSALNHFPEDFGAPSEQAA
Sbjct: 481 LCDTMVNGSLCAMGGMTPFPVLSALNHFPEDFGAPSEQAA 520


>ref|YP_004751540.1| NAD-dependent formate dehydrogenase subunit beta [Collimonas
           fungivorans Ter331]
 gb|AEK60717.1| NAD-dependent formate dehydrogenase beta subunit [Collimonas
           fungivorans Ter331]
          Length = 518

 Score =  841 bits (2173), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/508 (81%), Positives = 457/508 (89%), Gaps = 1/508 (0%)

Query: 7   TVTVYVPRDSTALALGANEVAAAITAEAHKRGQSIRLVRNGSRGMFWLEPLVEVATAAGR 66
           ++T+YVPRDSTALALGANEVAAAI AEA KRGQ I LVRNGSRGMFWLEPLVEVATAAGR
Sbjct: 2   SITIYVPRDSTALALGANEVAAAIVAEAAKRGQEITLVRNGSRGMFWLEPLVEVATAAGR 61

Query: 67  VAYGPVAPEDVAGLFDAGLLQGGQHALHLGLTEEIAFLKNQERLTFARVGIIDPLSLEDY 126
           V YGPV PEDVAGLFDA  + GGQH L LGL +EI +LK QERLTFARVGI DP+SL+DY
Sbjct: 62  VGYGPVEPEDVAGLFDADFMAGGQHPLALGLVDEIPYLKKQERLTFARVGITDPVSLDDY 121

Query: 127 LAHEGYVGLKNALAKTPEAIVQEMIASGLRGRGGAAFPTGIKWQTVLRAQSAQKYVVCNA 186
           LAHEGY GL+ ALA     IVQE++ SGLRGRGGAAFPTGIKW+TVL AQSAQKY+VCNA
Sbjct: 122 LAHEGYQGLQKALAMQSADIVQEVLDSGLRGRGGAAFPTGIKWKTVLGAQSAQKYIVCNA 181

Query: 187 DEGDSGTFSDRMIMEDDPFTLIEGMTIAGVAVGATEGYIYVRSEYPHSIATLEQAIAIAH 246
           DEGDSGTFSDRMIMEDDPF LIEGMTIA +AVGAT GYIYVRSEYPH+IA L+QAI  A+
Sbjct: 182 DEGDSGTFSDRMIMEDDPFVLIEGMTIAALAVGATRGYIYVRSEYPHAIAALDQAIVTAN 241

Query: 247 AQGYLGDDILGSDKSFRLEVRKGAGAYICGEETAMLESLEGKRGVVRAKPPLPAIEGLFG 306
           +  YLG++ILGS ++F LEVRKGAGAYICGEETA+LESLEGKRGVVRAKPPLPAIEGLFG
Sbjct: 242 SCNYLGENILGSGRAFHLEVRKGAGAYICGEETALLESLEGKRGVVRAKPPLPAIEGLFG 301

Query: 307 KPTVINNLISLASVPVILARGADFYKNFGVGRSHGTLPFQLAGNIRQGGLVEKAFGLTLR 366
           KPTVINN+ISLASVP+ILARGA FYKN+G+GRS GTLP QLAGNIR GGLVEKAFG+TLR
Sbjct: 302 KPTVINNVISLASVPIILARGAAFYKNYGMGRSLGTLPMQLAGNIRHGGLVEKAFGVTLR 361

Query: 367 QLLEDFGGGSASGRPIRAVQMGGPLGAYLPQSQFDTPLDYEAFAAIGAMIGHGGLVAFDD 426
           +LL DFGGG+ASG+PIRAVQ+GGPLG YLP S FDT LDYEAFAA+G M+GHGG+V FDD
Sbjct: 362 ELLFDFGGGTASGKPIRAVQVGGPLGPYLPASLFDTKLDYEAFAAVGGMLGHGGIVVFDD 421

Query: 427 SVDMARQARYAMQFCAVESCGKCTPCRIGSTRGVEVIDKIIAN-DDRAQQIHLLKSLCDT 485
           SVDMA+QARYAM+FCAVESCGKCTPCRIGSTRGVEVIDKI+A  D R+QQIHLL+ LCDT
Sbjct: 422 SVDMAKQARYAMEFCAVESCGKCTPCRIGSTRGVEVIDKIVAGADTRSQQIHLLRDLCDT 481

Query: 486 MVNGSLCAMGGMTPFPVLSALNHFPEDF 513
           MVNGSLCAMG MTP PVLSAL+HFPEDF
Sbjct: 482 MVNGSLCAMGSMTPLPVLSALDHFPEDF 509


>ref|YP_001355343.1| NAD-dependent formate dehydrogenase beta subunit [Janthinobacterium
           sp. Marseille]
 gb|ABR89660.1| NAD-dependent formate dehydrogenase beta subunit [Janthinobacterium
           sp. Marseille]
          Length = 518

 Score =  838 bits (2165), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/508 (77%), Positives = 449/508 (88%)

Query: 7   TVTVYVPRDSTALALGANEVAAAITAEAHKRGQSIRLVRNGSRGMFWLEPLVEVATAAGR 66
           TVT++VPRDSTALALGANE AAAI  EA  RG  I+LVRNGSRGMFWLEPLVEVAT AGR
Sbjct: 2   TVTIFVPRDSTALALGANETAAAIEREAKARGIDIKLVRNGSRGMFWLEPLVEVATDAGR 61

Query: 67  VAYGPVAPEDVAGLFDAGLLQGGQHALHLGLTEEIAFLKNQERLTFARVGIIDPLSLEDY 126
           + +GP+   +VAGLFDAG   GG H   LGLTEEI +LK QERL F RVGI DP+SLEDY
Sbjct: 62  IGFGPIEEHEVAGLFDAGFTTGGSHPKALGLTEEIPYLKKQERLQFVRVGITDPVSLEDY 121

Query: 127 LAHEGYVGLKNALAKTPEAIVQEMIASGLRGRGGAAFPTGIKWQTVLRAQSAQKYVVCNA 186
           LAH+GYVGLK A+A  P AIVQE+  SGLRGRGGAAFPTGIKW+TVL A++AQKY+ CNA
Sbjct: 122 LAHDGYVGLKKAIAMEPAAIVQEVTDSGLRGRGGAAFPTGIKWKTVLGAEAAQKYIACNA 181

Query: 187 DEGDSGTFSDRMIMEDDPFTLIEGMTIAGVAVGATEGYIYVRSEYPHSIATLEQAIAIAH 246
           DEGDSGTFSDRM+MEDDPF LIEGMTIAG+AV ATEGYIYVRSEYPHSIA L +AI  A+
Sbjct: 182 DEGDSGTFSDRMVMEDDPFMLIEGMTIAGLAVKATEGYIYVRSEYPHSIANLNEAIVAAN 241

Query: 247 AQGYLGDDILGSDKSFRLEVRKGAGAYICGEETAMLESLEGKRGVVRAKPPLPAIEGLFG 306
           A GYLG++ILGS ++F L+VRK AGAY+CGEETAMLES+EGKRG+VRAKPPLPA++GLFG
Sbjct: 242 AAGYLGENILGSGRTFNLQVRKAAGAYVCGEETAMLESIEGKRGMVRAKPPLPALQGLFG 301

Query: 307 KPTVINNLISLASVPVILARGADFYKNFGVGRSHGTLPFQLAGNIRQGGLVEKAFGLTLR 366
           +PTVINN+ISL++VP+IL+RGA+FYKN+G+GRS GTLP QLAGN++ GGLVEKAFG+TLR
Sbjct: 302 QPTVINNVISLSAVPLILSRGAEFYKNYGMGRSRGTLPMQLAGNLKYGGLVEKAFGVTLR 361

Query: 367 QLLEDFGGGSASGRPIRAVQMGGPLGAYLPQSQFDTPLDYEAFAAIGAMIGHGGLVAFDD 426
           +LL DFGGGS SGRPIRAVQ+GGPLGAY+P+S FDTP DYEAFAA+ + +GHGGLVAFDD
Sbjct: 362 ELLYDFGGGSESGRPIRAVQVGGPLGAYMPESLFDTPFDYEAFAAVASTVGHGGLVAFDD 421

Query: 427 SVDMARQARYAMQFCAVESCGKCTPCRIGSTRGVEVIDKIIANDDRAQQIHLLKSLCDTM 486
           +VDMA+QARYAM FCA ESCGKCTPCRIGSTRGVEV+DKIIAN +R QQIHLL+ LCD M
Sbjct: 422 TVDMAKQARYAMHFCAEESCGKCTPCRIGSTRGVEVMDKIIANQNRPQQIHLLRDLCDVM 481

Query: 487 VNGSLCAMGGMTPFPVLSALNHFPEDFG 514
           V GSLCAMG MTPFPVLSALNHFPEDFG
Sbjct: 482 VTGSLCAMGNMTPFPVLSALNHFPEDFG 509


>ref|YP_001101655.1| NAD dependent formate dehydrogenase subunit beta: fdsB
           [Herminiimonas arsenicoxydans]
 emb|CAL63534.1| NAD-dependent formate dehydrogenase beta subunit [Herminiimonas
           arsenicoxydans]
          Length = 525

 Score =  837 bits (2162), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/517 (76%), Positives = 450/517 (87%), Gaps = 4/517 (0%)

Query: 2   MSANDTVTVYVPRDSTALALGANEVAAAITAEAHKRGQSIRLVRNGSRGMFWLEPLVEVA 61
           MSA  +VT++VPRDSTALALGANE AAAI  EA  RG  I+LVRNGSRGMFWLEPLVEVA
Sbjct: 1   MSATKSVTIFVPRDSTALALGANETAAAIVREAKARGIDIKLVRNGSRGMFWLEPLVEVA 60

Query: 62  TAAGRVAYGPVAPEDVAGLFDAGLLQGG----QHALHLGLTEEIAFLKNQERLTFARVGI 117
           T AGR+A+GP+   +VAGLFDAG   G      H   LGLTEEI +LK QERL F RVGI
Sbjct: 61  TDAGRIAFGPIEEHEVAGLFDAGFTTGKAEKQTHPKALGLTEEIPYLKKQERLQFVRVGI 120

Query: 118 IDPLSLEDYLAHEGYVGLKNALAKTPEAIVQEMIASGLRGRGGAAFPTGIKWQTVLRAQS 177
            DP+SL+DYLAHEGYVGLK A+A  P AIVQE+  SGLRGRGGAAFPTGIKW+TVL A++
Sbjct: 121 TDPVSLDDYLAHEGYVGLKKAIAMEPAAIVQEVTDSGLRGRGGAAFPTGIKWKTVLGAEA 180

Query: 178 AQKYVVCNADEGDSGTFSDRMIMEDDPFTLIEGMTIAGVAVGATEGYIYVRSEYPHSIAT 237
            QKY+ CNADEGDSGTFSDRM+MEDDPF LIEGMTIAG+AV ATEGYIYVRSEYPHSIA 
Sbjct: 181 DQKYIACNADEGDSGTFSDRMVMEDDPFMLIEGMTIAGLAVNATEGYIYVRSEYPHSIAN 240

Query: 238 LEQAIAIAHAQGYLGDDILGSDKSFRLEVRKGAGAYICGEETAMLESLEGKRGVVRAKPP 297
           L +AI  A+A GYLG +ILGS ++F L+VRK AGAY+CGEETAMLES+EGKRG+VRAKPP
Sbjct: 241 LNEAIVAANAAGYLGKNILGSGRTFNLQVRKAAGAYVCGEETAMLESIEGKRGLVRAKPP 300

Query: 298 LPAIEGLFGKPTVINNLISLASVPVILARGADFYKNFGVGRSHGTLPFQLAGNIRQGGLV 357
           LPA++GLFGKPTVINN+ISL++VP+IL+RGA FYK+FG+GRS GTLP QLAGN++ GGLV
Sbjct: 301 LPALQGLFGKPTVINNVISLSAVPLILSRGATFYKDFGMGRSRGTLPMQLAGNLKYGGLV 360

Query: 358 EKAFGLTLRQLLEDFGGGSASGRPIRAVQMGGPLGAYLPQSQFDTPLDYEAFAAIGAMIG 417
           EKAFG+TLR+LL DFGGGS SGRPIRAVQ+GGPLGAY+P+S FDTP DYEAFAA+ + +G
Sbjct: 361 EKAFGVTLRELLYDFGGGSESGRPIRAVQVGGPLGAYMPESLFDTPFDYEAFAAVASTVG 420

Query: 418 HGGLVAFDDSVDMARQARYAMQFCAVESCGKCTPCRIGSTRGVEVIDKIIANDDRAQQIH 477
           HGGLVAFDD+VDMA+QARYAM FCAVESCGKCTPCRIGSTRGVEV+DKIIAN +R QQIH
Sbjct: 421 HGGLVAFDDTVDMAKQARYAMHFCAVESCGKCTPCRIGSTRGVEVMDKIIANQNRPQQIH 480

Query: 478 LLKSLCDTMVNGSLCAMGGMTPFPVLSALNHFPEDFG 514
           LL+ LCD MV GSLCAMG MTPFPVLSALNHFPEDFG
Sbjct: 481 LLRDLCDVMVTGSLCAMGNMTPFPVLSALNHFPEDFG 517


>ref|YP_004752658.1| NAD-dependent formate dehydrogenase subunit beta [Collimonas
           fungivorans Ter331]
 gb|AEK61835.1| NAD-dependent formate dehydrogenase beta subunit [Collimonas
           fungivorans Ter331]
          Length = 530

 Score =  835 bits (2157), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/521 (79%), Positives = 459/521 (88%), Gaps = 11/521 (2%)

Query: 7   TVTVYVPRDSTALALGANEVAAAITAEAHKRGQSIRLVRNGSRGMFWLEPLVEVATAAGR 66
           ++TVYVPRDSTALALGANEVAAAI AEA KRGQ I LVRNGSRGMFWLEPLVEVATAAGR
Sbjct: 2   SITVYVPRDSTALALGANEVAAAIVAEAAKRGQQITLVRNGSRGMFWLEPLVEVATAAGR 61

Query: 67  VAYGPVAPEDVAGLFDAGL-----LQGGQHALHLGLTEEIAFLKNQERLTFARVGIIDPL 121
           + YGPVAPEDVAGLFDA L     L GGQH L LGL +EI +LKNQERLTFARVGI DP+
Sbjct: 62  IGYGPVAPEDVAGLFDADLFNADVLAGGQHRLALGLVDEIPYLKNQERLTFARVGITDPV 121

Query: 122 SLEDYLAHEGYVGLKNALAKTPEAIVQEMIASGLRGRGGAAFPTGIKWQTVLRAQSAQKY 181
           SL+DYLAHEGY+GL+NALA     IVQE++ SGLRGRGGAAFPTGIKW+TVL AQ AQKY
Sbjct: 122 SLDDYLAHEGYLGLQNALAMQSADIVQEVLDSGLRGRGGAAFPTGIKWKTVLGAQGAQKY 181

Query: 182 VVCNADEGDSGTFSDRMIMEDDPFTLIEGMTIAGVAVGATEGYIYVRSEYPHSIATLEQA 241
           +VCNADEGDSGTFSDRMIMEDDPF LIEGMTIAG+AV A  GYIYVRSEYPH+IA L +A
Sbjct: 182 IVCNADEGDSGTFSDRMIMEDDPFVLIEGMTIAGLAVNADYGYIYVRSEYPHAIAVLNEA 241

Query: 242 IAIAHAQGYLGDDILGSDKSFRLEVRKGAGAYICGEETAMLESLEGKRGVVRAKPPLPAI 301
           IA A+A+G+LG +ILG  K F+LEVRKGAGAY+CGEETA+LESLEGKRGVVRAKPPLPAI
Sbjct: 242 IATANARGFLGKNILGFGKDFQLEVRKGAGAYVCGEETALLESLEGKRGVVRAKPPLPAI 301

Query: 302 EGLFGKPTVINNLISLASVPVILARGADFYKNFGVGRSHGTLPFQLAGNIRQGGLVEKAF 361
           EGLFGKPTVINN+I+LASVP++LARGA FYKNFG GRS GTLP QLAGNI+ GGLVEKAF
Sbjct: 302 EGLFGKPTVINNVITLASVPIVLARGAAFYKNFGQGRSMGTLPMQLAGNIKYGGLVEKAF 361

Query: 362 GLTLRQLLEDFGGGSASGRPIRAVQMGGPLGAYLPQSQFDTPLDYEAFAAIGAMIGHGGL 421
           G+TLR+LL DFGGG+ SGR +RAVQ+GGPLG YLP + FDTPLDYEAFAA+G  +GHGG+
Sbjct: 362 GVTLRELLFDFGGGTESGRTMRAVQVGGPLGPYLPPALFDTPLDYEAFAAVGGTVGHGGM 421

Query: 422 VAFDDSVDMARQARYAMQFCAVESCGKCTPCRIGSTRGVEVIDKIIANDD------RAQQ 475
           V FDDSVDMA+QARY+M+FC VESCGKCTPCRIGSTRGVEVIDKIIAN +      R QQ
Sbjct: 422 VVFDDSVDMAQQARYSMEFCVVESCGKCTPCRIGSTRGVEVIDKIIANANPANTGQRQQQ 481

Query: 476 IHLLKSLCDTMVNGSLCAMGGMTPFPVLSALNHFPEDFGAP 516
           IHLL+ LCDTM+NGSLCAMG MTP PVLSALNHFPEDFGAP
Sbjct: 482 IHLLRDLCDTMINGSLCAMGSMTPLPVLSALNHFPEDFGAP 522


>ref|YP_002944903.1| NADH dehydrogenase (quinone) [Variovorax paradoxus S110]
 gb|ACS19637.1| NADH dehydrogenase (quinone) [Variovorax paradoxus S110]
          Length = 519

 Score =  806 bits (2082), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/517 (73%), Positives = 448/517 (86%), Gaps = 2/517 (0%)

Query: 7   TVTVYVPRDSTALALGANEVAAAITAEAHKRGQSIRLVRNGSRGMFWLEPLVEVATAAGR 66
           T  +YVPRDS ALA+GA+ VA  I A+A  R   +R+VRNGSRG+FWLEPLVEVAT  GR
Sbjct: 3   TTIIYVPRDSAALAVGADRVARQIEAQARARNADVRIVRNGSRGLFWLEPLVEVATPQGR 62

Query: 67  VAYGPVAPEDVAGLFDAGLLQGGQHALHLGLTEEIAFLKNQERLTFARVGIIDPLSLEDY 126
           VAYGPV   DVAGLF+AG L GG HAL+LGLTEEIA+LK QERLTFAR+G+ DP+S+ DY
Sbjct: 63  VAYGPVTGADVAGLFEAGFLSGGAHALNLGLTEEIAYLKKQERLTFARMGVTDPVSVADY 122

Query: 127 LAHEGYVGLKNALAKTPEAIVQEMIASGLRGRGGAAFPTGIKWQTVLRAQSAQKYVVCNA 186
            AHEG+ GL+ AL   P  IVQ+++ SGLRGRGGAAFP GIKW+TVL A++ QKY+VCNA
Sbjct: 123 EAHEGFAGLRRALTLAPAEIVQQVLDSGLRGRGGAAFPAGIKWKTVLAAEAPQKYIVCNA 182

Query: 187 DEGDSGTFSDRMIMEDDPFTLIEGMTIAGVAVGATEGYIYVRSEYPHSIATLEQAIAIAH 246
           DEGDSGTFSDRM ME DP  L+EGM IAG+A GATEGYIYVRSEYPH+IATL +AI  A 
Sbjct: 183 DEGDSGTFSDRMTMEGDPLMLVEGMAIAGIATGATEGYIYVRSEYPHAIATLNEAIRHAE 242

Query: 247 AQGYLGDDILGSDKSFRLEVRKGAGAYICGEETAMLESLEGKRGVVRAKPPLPAIEGLFG 306
             G+LGDDILGS  +FRL VRK AGAY+CGEETA+LESLEG+RG+VRAKPPLPA++GLFG
Sbjct: 243 QAGFLGDDILGSGHAFRLTVRKAAGAYVCGEETALLESLEGRRGIVRAKPPLPALQGLFG 302

Query: 307 KPTVINNLISLASVPVILARGADFYKNFGVGRSHGTLPFQLAGNIRQGGLVEKAFGLTLR 366
           +PTVINN+I+LASVP+ILARGADFYK++G+GRS GTLPFQLAGNIR GGLVEKAFGL+LR
Sbjct: 303 QPTVINNVITLASVPLILARGADFYKHYGMGRSRGTLPFQLAGNIRHGGLVEKAFGLSLR 362

Query: 367 QLLEDFGGGSASGRPIRAVQMGGPLGAYLPQSQFDTPLDYEAFAAIGAMIGHGGLVAFDD 426
           +LL DFGGGSASGRPI+AVQ+GGPLGAY+P+SQ+D PLDYEA+AA+GA++GHGG+V  DD
Sbjct: 363 ELLYDFGGGSASGRPIKAVQVGGPLGAYVPESQWDLPLDYEAYAAVGAVVGHGGIVVHDD 422

Query: 427 SVDMARQARYAMQFCAVESCGKCTPCRIGSTRGVEVIDKIIANDDRAQQIHLLKSLCDTM 486
           + DM++ ARYAM+FCA+ESCGKCTPCRIGSTRGVEVIDKI +N +R QQ+ LL+ LCDTM
Sbjct: 423 TADMSQLARYAMEFCAIESCGKCTPCRIGSTRGVEVIDKITSNQNRPQQVILLRDLCDTM 482

Query: 487 VNGSLCAMGGMTPFPVLSALNHFPEDFG--APSEQAA 521
           ++GSLCAMGGMTP+PVLSA+NH+PEDFG  AP   AA
Sbjct: 483 LHGSLCAMGGMTPYPVLSAINHYPEDFGIEAPDRAAA 519


>ref|ZP_03698685.1| NADH dehydrogenase (quinone) [Lutiella nitroferrum 2002]
 gb|EEG08679.1| NADH dehydrogenase (quinone) [Lutiella nitroferrum 2002]
          Length = 514

 Score =  803 bits (2075), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/509 (76%), Positives = 448/509 (88%), Gaps = 1/509 (0%)

Query: 7   TVTVYVPRDSTALALGANEVAAAITAEAHKRGQSIRLVRNGSRGMFWLEPLVEVATAAGR 66
           ++ ++VPRDS ALALGA++ A A+ AEA +RG  I LVRNGSRG+FWLEPLVEV TA GR
Sbjct: 2   SIRLFVPRDSAALALGADDTAVALAAEAARRGVDIELVRNGSRGLFWLEPLVEVETAQGR 61

Query: 67  VAYGPVAPEDVAGLFDAGLLQGGQHALHLGLTEEIAFLKNQERLTFARVGIIDPLSLEDY 126
           VAYGPV  +DVA LFDA L+ G +H L  GLTE+I +LKNQERLTFARVGI DPLSL DY
Sbjct: 62  VAYGPVEADDVAALFDA-LIHGAEHPLGHGLTEDIPYLKNQERLTFARVGITDPLSLADY 120

Query: 127 LAHEGYVGLKNALAKTPEAIVQEMIASGLRGRGGAAFPTGIKWQTVLRAQSAQKYVVCNA 186
            AHEG+ GLK AL+    AIVQE++ SGLRGRGGAAFPTGIKW+TV  A++AQKYVVCNA
Sbjct: 121 QAHEGFAGLKRALSMDGAAIVQEVLDSGLRGRGGAAFPTGIKWRTVALAEAAQKYVVCNA 180

Query: 187 DEGDSGTFSDRMIMEDDPFTLIEGMTIAGVAVGATEGYIYVRSEYPHSIATLEQAIAIAH 246
           DEGDSGT+SDRM+MEDDPF LIEGMTIAG+AVGAT+GYIYVRSEYPHS   L QAI +A 
Sbjct: 181 DEGDSGTYSDRMVMEDDPFMLIEGMTIAGLAVGATQGYIYVRSEYPHSFDVLNQAIRLAE 240

Query: 247 AQGYLGDDILGSDKSFRLEVRKGAGAYICGEETAMLESLEGKRGVVRAKPPLPAIEGLFG 306
             G+LG++IL S K F+L+VRK AGAY+CGEETAMLESLEGKRGVVRAKPPLPA+ GLFG
Sbjct: 241 DAGFLGENILASGKCFKLDVRKAAGAYVCGEETAMLESLEGKRGVVRAKPPLPALSGLFG 300

Query: 307 KPTVINNLISLASVPVILARGADFYKNFGVGRSHGTLPFQLAGNIRQGGLVEKAFGLTLR 366
           +PTVINN+ISLASVPVILARGA FY ++G+GRS GTLPFQLAGN++ GGLVEKAFGLTLR
Sbjct: 301 QPTVINNVISLASVPVILARGAAFYADYGMGRSKGTLPFQLAGNLKYGGLVEKAFGLTLR 360

Query: 367 QLLEDFGGGSASGRPIRAVQMGGPLGAYLPQSQFDTPLDYEAFAAIGAMIGHGGLVAFDD 426
           +LL DFGGGSASGRPIRAVQ+GGPLGAYLP+SQFDTPLDYEAFAA+GA++GHGG+VAFDD
Sbjct: 361 ELLHDFGGGSASGRPIRAVQVGGPLGAYLPESQFDTPLDYEAFAALGAVVGHGGIVAFDD 420

Query: 427 SVDMARQARYAMQFCAVESCGKCTPCRIGSTRGVEVIDKIIANDDRAQQIHLLKSLCDTM 486
           +VDM  QARYAM+FCA+ESCGKCTPCRIGSTRGVEVI +I  ++ R QQI LL+ LCDTM
Sbjct: 421 TVDMVEQARYAMEFCAIESCGKCTPCRIGSTRGVEVIQRIQKDEKRPQQIALLRDLCDTM 480

Query: 487 VNGSLCAMGGMTPFPVLSALNHFPEDFGA 515
           ++GSLCAMGGMTP+PVLSALNHFPEDFGA
Sbjct: 481 LHGSLCAMGGMTPYPVLSALNHFPEDFGA 509


>ref|YP_582709.1| NAD-dependent formate dehydrogenase subunit beta [Cupriavidus
           metallidurans CH34]
 gb|ABF07440.1| NAD-dependent formate dehydrogenase beta subunit [Cupriavidus
           metallidurans CH34]
          Length = 518

 Score =  801 bits (2070), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/514 (75%), Positives = 446/514 (86%)

Query: 7   TVTVYVPRDSTALALGANEVAAAITAEAHKRGQSIRLVRNGSRGMFWLEPLVEVATAAGR 66
           + T++VPRDSTALALGA+EVA AI  EA KRG  +R+VRNGSRGMFWLEPLVEV T AGR
Sbjct: 2   STTIFVPRDSTALALGADEVAQAIAREAEKRGADVRIVRNGSRGMFWLEPLVEVQTDAGR 61

Query: 67  VAYGPVAPEDVAGLFDAGLLQGGQHALHLGLTEEIAFLKNQERLTFARVGIIDPLSLEDY 126
           VAYGPV  +DV+ LFDAG L GG HAL  G T EI FLK QERLTF RVGI DPLSL+DY
Sbjct: 62  VAYGPVTEDDVSALFDAGFLHGGSHALSHGATAEIPFLKKQERLTFMRVGITDPLSLDDY 121

Query: 127 LAHEGYVGLKNALAKTPEAIVQEMIASGLRGRGGAAFPTGIKWQTVLRAQSAQKYVVCNA 186
           +AHEG+VGL  AL+  P  IVQE++ SGLRGRGGAAFPTGIKW+TVL A+S  KYVVCNA
Sbjct: 122 IAHEGFVGLTRALSMAPAEIVQEVVDSGLRGRGGAAFPTGIKWKTVLGARSDVKYVVCNA 181

Query: 187 DEGDSGTFSDRMIMEDDPFTLIEGMTIAGVAVGATEGYIYVRSEYPHSIATLEQAIAIAH 246
           DEGDSGTFSDRM+MEDDPF LIEGM IAG+AVGA +GYIY RSEYPH+IA  E AI IA 
Sbjct: 182 DEGDSGTFSDRMVMEDDPFMLIEGMVIAGLAVGAEQGYIYTRSEYPHAIAATEAAIEIAT 241

Query: 247 AQGYLGDDILGSDKSFRLEVRKGAGAYICGEETAMLESLEGKRGVVRAKPPLPAIEGLFG 306
             G+LGDDI GS + F+LEVRKGAGAY+CGEETA+LESLEGKRGVVRAKPPLPA+EGLFG
Sbjct: 242 RAGWLGDDIRGSGRCFQLEVRKGAGAYVCGEETALLESLEGKRGVVRAKPPLPALEGLFG 301

Query: 307 KPTVINNLISLASVPVILARGADFYKNFGVGRSHGTLPFQLAGNIRQGGLVEKAFGLTLR 366
           KPTVINN+ISLA+VPVILARGA FY++FG+GRS GTLPFQLAGNIRQGGLVEKAFG+TLR
Sbjct: 302 KPTVINNVISLATVPVILARGAKFYQDFGMGRSRGTLPFQLAGNIRQGGLVEKAFGVTLR 361

Query: 367 QLLEDFGGGSASGRPIRAVQMGGPLGAYLPQSQFDTPLDYEAFAAIGAMIGHGGLVAFDD 426
           +L+ D+GGG+ SGR IRAVQ+GGPLGAYLP+S+FDTP+DYEA+AA GA++GHGG+V FD+
Sbjct: 362 ELMLDYGGGTRSGRAIRAVQVGGPLGAYLPESRFDTPIDYEAYAAFGAVVGHGGIVVFDE 421

Query: 427 SVDMARQARYAMQFCAVESCGKCTPCRIGSTRGVEVIDKIIANDDRAQQIHLLKSLCDTM 486
           +VDMA+ ARYAM+FCA+ESCGKCTPCRIGSTRGVEV+D+IIA D   + + L++ LCDTM
Sbjct: 422 TVDMAKMARYAMEFCAIESCGKCTPCRIGSTRGVEVMDRIIAGDQPVKHVALVRDLCDTM 481

Query: 487 VNGSLCAMGGMTPFPVLSALNHFPEDFGAPSEQA 520
           VNGSLCAMG MTP+PVLSAL+ FPEDFG   + A
Sbjct: 482 VNGSLCAMGSMTPYPVLSALDEFPEDFGLSGKAA 515


>ref|YP_544830.1| NADH dehydrogenase (quinone) [Methylobacillus flagellatus KT]
 gb|ABE48989.1| formate dehydrogenase beta subunit [Methylobacillus flagellatus KT]
          Length = 516

 Score =  798 bits (2062), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/514 (74%), Positives = 443/514 (86%), Gaps = 1/514 (0%)

Query: 9   TVYVPRDSTALALGANEVAAAITAEAHKRGQSIRLVRNGSRGMFWLEPLVEVATAAGRVA 68
           TVY+PRDS+A++LGAN VAAAI  EA  R   + ++RNGSRGMFWLEPLVEVAT+ GR+A
Sbjct: 3   TVYIPRDSSAISLGANLVAAAIAKEAESRNIPLNIIRNGSRGMFWLEPLVEVATSVGRIA 62

Query: 69  YGPVAPEDVAGLFDAGLLQGGQHALHLGLTEEIAFLKNQERLTFARVGIIDPLSLEDYLA 128
           YGPV  + VA LFDAG L GGQHAL LG TEE+ ++K+QERLTFARVGI DP+SL+DYLA
Sbjct: 63  YGPVTTDQVASLFDAGFLDGGQHALSLGPTEELPWMKHQERLTFARVGITDPVSLQDYLA 122

Query: 129 HEGYVGLKNALAKTPEAIVQEMIASGLRGRGGAAFPTGIKWQTVLRAQSAQKYVVCNADE 188
           H+GY GL+NA+   P+ IVQ++  SGLRGRGGAAFPTGIKW+TVL A + QKYVVCNADE
Sbjct: 123 HDGYKGLRNAIDMAPQDIVQQVTDSGLRGRGGAAFPTGIKWKTVLEAPAEQKYVVCNADE 182

Query: 189 GDSGTFSDRMIMEDDPFTLIEGMTIAGVAVGATEGYIYVRSEYPHSIATLEQAIAIAHAQ 248
           GDSGTFSDRMIME DPF LIEGMTIAG+AVGAT+GYIYVRSEYPHSIA L  AI  A+  
Sbjct: 183 GDSGTFSDRMIMEGDPFVLIEGMTIAGIAVGATQGYIYVRSEYPHSIAALNLAIKSAYEA 242

Query: 249 GYLGDDILGSDKSFRLEVRKGAGAYICGEETAMLESLEGKRGVVRAKPPLPAIEGLFGKP 308
           GYLG  ILGS   F LEVR+ AGAY+CGEETA+LESLEGKRG+VR KPPLPAI GLFGKP
Sbjct: 243 GYLGRGILGSRHDFYLEVRRAAGAYVCGEETALLESLEGKRGLVRFKPPLPAISGLFGKP 302

Query: 309 TVINNLISLASVPVILARGADFYKNFGVGRSHGTLPFQLAGNIRQGGLVEKAFGLTLRQL 368
           TVINN+ISLASVP+IL +G+ +Y+++G+GRS GTLP QLAGNI+ GGLVEKAFG+TLR+L
Sbjct: 303 TVINNVISLASVPIILDKGSVYYRDYGMGRSRGTLPIQLAGNIKHGGLVEKAFGVTLREL 362

Query: 369 LEDFGGGSASGRPIRAVQMGGPLGAYLPQSQFDTPLDYEAFAAIGAMIGHGGLVAFDDSV 428
           L D+GGGSASGRPI+AVQ+GGPLGAYLP+SQFDTPLDYE F  + A++GHGG+VAFDD+V
Sbjct: 363 LYDYGGGSASGRPIKAVQVGGPLGAYLPESQFDTPLDYEEFGKLWAVLGHGGIVAFDDTV 422

Query: 429 DMARQARYAMQFCAVESCGKCTPCRIGSTRGVEVIDKIIANDDRAQQIHLLKSLCDTMVN 488
           DMA  ARYA +FCAVESCGKCTPCRIGSTRGVEV+DKIIA  D A+ I L++ L DTM+N
Sbjct: 423 DMAHMARYAFEFCAVESCGKCTPCRIGSTRGVEVMDKIIAGTDPAKHIALVRDLGDTMLN 482

Query: 489 GSLCAMGGMTPFPVLSALNHFPEDFG-APSEQAA 521
           GSLCA+GGMTP+PVLSALNHFPEDFG +  EQAA
Sbjct: 483 GSLCALGGMTPYPVLSALNHFPEDFGISKKEQAA 516


>ref|YP_725157.1| NAD-dependent formate dehydrogenase beta subunit [Ralstonia
           eutropha H16]
 emb|CAJ91789.1| NAD-dependent formate dehydrogenase beta subunit [Ralstonia
           eutropha H16]
          Length = 520

 Score =  793 bits (2047), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/513 (76%), Positives = 451/513 (87%)

Query: 8   VTVYVPRDSTALALGANEVAAAITAEAHKRGQSIRLVRNGSRGMFWLEPLVEVATAAGRV 67
            T++VPRDSTALALGA++VA AI  EA  R + +R+VRNGSRGMFWLEPLVEV T AGRV
Sbjct: 5   TTIFVPRDSTALALGADDVARAIAREAAARNEHVRIVRNGSRGMFWLEPLVEVQTGAGRV 64

Query: 68  AYGPVAPEDVAGLFDAGLLQGGQHALHLGLTEEIAFLKNQERLTFARVGIIDPLSLEDYL 127
           AYGPV+  DV GLFDAGLLQGG+HAL  G+TEEI FLK QERLTFARVGI DPLSL+DY 
Sbjct: 65  AYGPVSAADVPGLFDAGLLQGGEHALSQGVTEEIPFLKQQERLTFARVGITDPLSLDDYR 124

Query: 128 AHEGYVGLKNALAKTPEAIVQEMIASGLRGRGGAAFPTGIKWQTVLRAQSAQKYVVCNAD 187
           AHEG+ GL+ ALA  P  IVQE+  SGLRGRGGAAFPTGIKW+TVL AQSA KY+VCNAD
Sbjct: 125 AHEGFAGLERALAMQPAEIVQEVTDSGLRGRGGAAFPTGIKWKTVLGAQSAVKYIVCNAD 184

Query: 188 EGDSGTFSDRMIMEDDPFTLIEGMTIAGVAVGATEGYIYVRSEYPHSIATLEQAIAIAHA 247
           EGDSGTFSDRM+MEDDPF LIEGMTIA +AVGA +GYIY RSEYPH+IA LE AI IA+A
Sbjct: 185 EGDSGTFSDRMVMEDDPFMLIEGMTIAALAVGAEQGYIYCRSEYPHAIAVLESAIGIANA 244

Query: 248 QGYLGDDILGSDKSFRLEVRKGAGAYICGEETAMLESLEGKRGVVRAKPPLPAIEGLFGK 307
            G+LGDDI GS K F LEVRKGAGAY+CGEETA+LESLEG+RGVVRAKPPLPA++GLFGK
Sbjct: 245 AGWLGDDIRGSGKRFHLEVRKGAGAYVCGEETALLESLEGRRGVVRAKPPLPALQGLFGK 304

Query: 308 PTVINNLISLASVPVILARGADFYKNFGVGRSHGTLPFQLAGNIRQGGLVEKAFGLTLRQ 367
           PTVINN+ISLA+VPVILARGA +Y+++G+GRS GTLPFQLAGNI+QGGLVEKAFG+TLR+
Sbjct: 305 PTVINNVISLATVPVILARGAQYYRDYGMGRSRGTLPFQLAGNIKQGGLVEKAFGVTLRE 364

Query: 368 LLEDFGGGSASGRPIRAVQMGGPLGAYLPQSQFDTPLDYEAFAAIGAMIGHGGLVAFDDS 427
           LL D+GGG+ SGR IRAVQ+GGPLGAYLP+S+FD PLDYEA+AA G ++GHGG+V FD++
Sbjct: 365 LLVDYGGGTRSGRAIRAVQVGGPLGAYLPESRFDVPLDYEAYAAFGGVVGHGGIVVFDET 424

Query: 428 VDMARQARYAMQFCAVESCGKCTPCRIGSTRGVEVIDKIIANDDRAQQIHLLKSLCDTMV 487
           VDMA+QARYAM+FCA+ESCGKCTPCRIGSTRGVEV+D+IIA +   + + L++ LCDTM+
Sbjct: 425 VDMAKQARYAMEFCAIESCGKCTPCRIGSTRGVEVMDRIIAGEQPVKHVALVRDLCDTML 484

Query: 488 NGSLCAMGGMTPFPVLSALNHFPEDFGAPSEQA 520
           NGSLCAMGGMTP+PVLSALN FPEDFG  S  A
Sbjct: 485 NGSLCAMGGMTPYPVLSALNEFPEDFGLASNPA 517