BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0013.p (158 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774898.1| NAD-dependent formate dehydrogenase subunit ... 322 1e-86 ref|YP_004752657.1| NAD-dependent formate dehydrogenase subunit ... 224 3e-57 ref|YP_001101656.1| NAD-dependent formate dehydrogenase subunit ... 223 9e-57 ref|YP_001355344.1| formate dehydrogenase, cytochrome b556 subun... 217 4e-55 ref|YP_004684492.1| NAD-dependent formate dehydrogenase gamma su... 213 7e-54 ref|YP_004751539.1| NAD-dependent formate dehydrogenase subunit ... 213 8e-54 ref|YP_725156.1| NAD-dependent formate dehydrogenase gamma subun... 210 4e-53 emb|CAA11233.1| NAD-dependent formate dehydrogenase gamma subuni... 209 1e-52 ref|YP_582708.1| NAD-dependent formate dehydrogenase gamma subun... 207 4e-52 ref|YP_002004649.1| NAD-dependent formate dehydrogenase subunit ... 198 2e-49 >ref|YP_003774898.1| NAD-dependent formate dehydrogenase subunit gamma [Herbaspirillum seropedicae SmR1] gb|ADJ62990.1| NAD-dependent formate dehydrogenase gamma subunit protein [Herbaspirillum seropedicae SmR1] Length = 158 Score = 322 bits (824), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 157/158 (99%), Positives = 157/158 (99%) Query: 1 MKRQQVFDVAAVRGIIAERKEMAGAMLPILHGIQEKVGYIPADAVPMIAGELNVSRAEVH 60 MKRQQVFDVAAVRGIIAERKEMAGAMLPILHGIQEKVGYIPADAVPMIAGELNVSRAEVH Sbjct: 1 MKRQQVFDVAAVRGIIAERKEMAGAMLPILHGIQEKVGYIPADAVPMIAGELNVSRAEVH 60 Query: 61 GVISFYHFFRQEPAGRHVVQVCRAEACQARGSEALAEHAQNVLGCGFHDTSADGQFTLEP 120 GVISFYHFFRQEPAGRHVVQVCRAEACQARG EALAEHAQNVLGCGFHDTSADGQFTLEP Sbjct: 61 GVISFYHFFRQEPAGRHVVQVCRAEACQARGGEALAEHAQNVLGCGFHDTSADGQFTLEP 120 Query: 121 VYCLGQCAIGPNLTLDDELHARVDADKFKRLIQAKREA 158 VYCLGQCAIGPNLTLDDELHARVDADKFKRLIQAKREA Sbjct: 121 VYCLGQCAIGPNLTLDDELHARVDADKFKRLIQAKREA 158 >ref|YP_004752657.1| NAD-dependent formate dehydrogenase subunit gamma [Collimonas fungivorans Ter331] gb|AEK61834.1| NAD-dependent formate dehydrogenase gamma subunit [Collimonas fungivorans Ter331] Length = 159 Score = 224 bits (572), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 104/156 (66%), Positives = 125/156 (80%) Query: 1 MKRQQVFDVAAVRGIIAERKEMAGAMLPILHGIQEKVGYIPADAVPMIAGELNVSRAEVH 60 M + QV D+ + +IA +K + GA+LPILH IQE GYIPA++VP+IA ELN+SRAEVH Sbjct: 1 MGKHQVVDMEHIASLIAAQKTLPGALLPILHAIQESAGYIPAESVPVIAQELNLSRAEVH 60 Query: 61 GVISFYHFFRQEPAGRHVVQVCRAEACQARGSEALAEHAQNVLGCGFHDTSADGQFTLEP 120 GVISFYH+FRQ PAGRHVVQ+CRAEACQARGS AL HA+ VLGC FH T+ DG+F+LE Sbjct: 61 GVISFYHYFRQHPAGRHVVQICRAEACQARGSAALEAHAKTVLGCDFHGTAKDGEFSLEA 120 Query: 121 VYCLGQCAIGPNLTLDDELHARVDADKFKRLIQAKR 156 VYCLGQCA GP + ++DELHARV K RL+QAKR Sbjct: 121 VYCLGQCACGPAIMINDELHARVSHGKLDRLLQAKR 156 >ref|YP_001101656.1| NAD-dependent formate dehydrogenase subunit gamma: FdsG [Herminiimonas arsenicoxydans] emb|CAL63535.1| NAD-dependent formate dehydrogenase gamma subunit [Herminiimonas arsenicoxydans] Length = 159 Score = 223 bits (567), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 102/156 (65%), Positives = 124/156 (79%) Query: 1 MKRQQVFDVAAVRGIIAERKEMAGAMLPILHGIQEKVGYIPADAVPMIAGELNVSRAEVH 60 M + FD+AAV IIA RKEM GA+LPILH IQ VGYIP+ VP IA LN+SRAEVH Sbjct: 1 MSAEHSFDMAAVESIIASRKEMPGALLPILHDIQNTVGYIPSLVVPAIADGLNISRAEVH 60 Query: 61 GVISFYHFFRQEPAGRHVVQVCRAEACQARGSEALAEHAQNVLGCGFHDTSADGQFTLEP 120 GVI++YHFFRQ PAG+HV+Q+CRAEACQARG E+L +HA+ +LGC FH + DG+F+LE Sbjct: 61 GVITYYHFFRQHPAGKHVIQICRAEACQARGCESLVDHAKELLGCDFHQITDDGKFSLEV 120 Query: 121 VYCLGQCAIGPNLTLDDELHARVDADKFKRLIQAKR 156 VYCLGQCA GP + +DD+L+ARV +KF LIQAKR Sbjct: 121 VYCLGQCASGPAIQIDDDLYARVSKEKFNNLIQAKR 156 >ref|YP_001355344.1| formate dehydrogenase, cytochrome b556 subunit (formate dehydrogenase gamma subunit) [Janthinobacterium sp. Marseille] gb|ABR90035.1| formate dehydrogenase, cytochrome b556 subunit (formate dehydrogenase gamma subunit) [Janthinobacterium sp. Marseille] Length = 159 Score = 217 bits (553), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 102/156 (65%), Positives = 121/156 (77%) Query: 1 MKRQQVFDVAAVRGIIAERKEMAGAMLPILHGIQEKVGYIPADAVPMIAGELNVSRAEVH 60 M Q FD+AAV IIA+RK GA+LPILH IQ VGYIP VP IA LN+SRAEVH Sbjct: 1 MNTQTPFDLAAVEAIIAQRKATPGALLPILHDIQGVVGYIPPSIVPAIAEGLNISRAEVH 60 Query: 61 GVISFYHFFRQEPAGRHVVQVCRAEACQARGSEALAEHAQNVLGCGFHDTSADGQFTLEP 120 GVI++YHFFRQ P G HVVQ+CRAEACQARG E+LA+HA+ +LGC FH T+ D +FTL+ Sbjct: 61 GVITYYHFFRQHPVGEHVVQICRAEACQARGCESLADHAKELLGCDFHGTTDDNKFTLQT 120 Query: 121 VYCLGQCAIGPNLTLDDELHARVDADKFKRLIQAKR 156 VYCLGQCA GP + +DD+L+ARV +KF LIQAKR Sbjct: 121 VYCLGQCASGPAIQIDDDLYARVSKEKFNSLIQAKR 156 >ref|YP_004684492.1| NAD-dependent formate dehydrogenase gamma subunit [Cupriavidus necator N-1] gb|AEI76011.1| NAD-dependent formate dehydrogenase gamma subunit [Cupriavidus necator N-1] Length = 175 Score = 213 bits (542), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 100/147 (68%), Positives = 121/147 (82%) Query: 12 VRGIIAERKEMAGAMLPILHGIQEKVGYIPADAVPMIAGELNVSRAEVHGVISFYHFFRQ 71 + I+A R+EM GA+LPILH IQ+ GYIP AVP+IA LN+SRAEVHGVI+FYH FRQ Sbjct: 17 IAAIVAARQEMPGALLPILHEIQDTQGYIPDAAVPVIARALNLSRAEVHGVITFYHHFRQ 76 Query: 72 EPAGRHVVQVCRAEACQARGSEALAEHAQNVLGCGFHDTSADGQFTLEPVYCLGQCAIGP 131 +PAGRHVVQVCRAEACQ+ G+EALAEHAQ LGCGFH+TSADGQ TLEPVYCLGQCA GP Sbjct: 77 QPAGRHVVQVCRAEACQSVGAEALAEHAQRALGCGFHETSADGQVTLEPVYCLGQCACGP 136 Query: 132 NLTLDDELHARVDADKFKRLIQAKREA 158 + + ++LH VDA +F L+++ RE+ Sbjct: 137 AVMVGEQLHGYVDAKRFDALVRSLRES 163 >ref|YP_004751539.1| NAD-dependent formate dehydrogenase subunit gamma [Collimonas fungivorans Ter331] gb|AEK60716.1| NAD-dependent formate dehydrogenase gamma subunit [Collimonas fungivorans Ter331] Length = 173 Score = 213 bits (542), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 101/149 (67%), Positives = 127/149 (85%) Query: 8 DVAAVRGIIAERKEMAGAMLPILHGIQEKVGYIPADAVPMIAGELNVSRAEVHGVISFYH 67 D+ V+ II + + + GAMLP+LH IQ+ +GY+P+ AVP+IA +LN+SRAEVHGVISFYH Sbjct: 22 DLDQVKSIIQKYQALPGAMLPVLHAIQDALGYVPSSAVPLIAEQLNLSRAEVHGVISFYH 81 Query: 68 FFRQEPAGRHVVQVCRAEACQARGSEALAEHAQNVLGCGFHDTSADGQFTLEPVYCLGQC 127 FRQ+PAGRHVVQ+CRAEACQA G++ALA HA+ LGC FH TS+DGQFTLEPVYCLGQC Sbjct: 82 HFRQQPAGRHVVQLCRAEACQAVGADALAAHAKAALGCDFHGTSSDGQFTLEPVYCLGQC 141 Query: 128 AIGPNLTLDDELHARVDADKFKRLIQAKR 156 A GP++ +DD+LHARV +DKF RL++AKR Sbjct: 142 ACGPSMLIDDDLHARVSSDKFNRLVRAKR 170 >ref|YP_725156.1| NAD-dependent formate dehydrogenase gamma subunit [Ralstonia eutropha H16] emb|CAJ91788.1| NAD-dependent formate dehydrogenase gamma subunit [Ralstonia eutropha H16] Length = 176 Score = 210 bits (535), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 98/151 (64%), Positives = 122/151 (80%) Query: 8 DVAAVRGIIAERKEMAGAMLPILHGIQEKVGYIPADAVPMIAGELNVSRAEVHGVISFYH 67 D + I+A R+++ GA+LPILH IQ+ GYIP AVP+IA LN+SRAEVHGVI+FYH Sbjct: 13 DATRIAAIVAARQDIPGALLPILHEIQDTQGYIPDAAVPVIARALNLSRAEVHGVITFYH 72 Query: 68 FFRQEPAGRHVVQVCRAEACQARGSEALAEHAQNVLGCGFHDTSADGQFTLEPVYCLGQC 127 FRQ+PAGRHVVQVCRAEACQ+ G+EALAEHAQ LGCGFH+T+ADGQ TLEPVYCLGQC Sbjct: 73 HFRQQPAGRHVVQVCRAEACQSVGAEALAEHAQRALGCGFHETTADGQVTLEPVYCLGQC 132 Query: 128 AIGPNLTLDDELHARVDADKFKRLIQAKREA 158 A GP + + ++LH VDA +F L+++ RE+ Sbjct: 133 ACGPAVMVGEQLHGYVDARRFDALVRSLRES 163 >emb|CAA11233.1| NAD-dependent formate dehydrogenase gamma subunit [Ralstonia eutropha H16] Length = 176 Score = 209 bits (532), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 97/151 (64%), Positives = 122/151 (80%) Query: 8 DVAAVRGIIAERKEMAGAMLPILHGIQEKVGYIPADAVPMIAGELNVSRAEVHGVISFYH 67 D + I+A R+++ GA+LPILH IQ+ GYIP AVP+IA LN+SRA+VHGVI+FYH Sbjct: 13 DATRIAAIVAARQDIPGALLPILHEIQDTQGYIPDAAVPVIARALNLSRADVHGVITFYH 72 Query: 68 FFRQEPAGRHVVQVCRAEACQARGSEALAEHAQNVLGCGFHDTSADGQFTLEPVYCLGQC 127 FRQ+PAGRHVVQVCRAEACQ+ G+EALAEHAQ LGCGFH+T+ADGQ TLEPVYCLGQC Sbjct: 73 HFRQQPAGRHVVQVCRAEACQSVGAEALAEHAQRALGCGFHETTADGQVTLEPVYCLGQC 132 Query: 128 AIGPNLTLDDELHARVDADKFKRLIQAKREA 158 A GP + + ++LH VDA +F L+++ RE+ Sbjct: 133 ACGPAVMVGEQLHGYVDARRFDALVRSLRES 163 >ref|YP_582708.1| NAD-dependent formate dehydrogenase gamma subunit [Cupriavidus metallidurans CH34] gb|ABF07439.1| NAD-dependent formate dehydrogenase gamma subunit [Cupriavidus metallidurans CH34] Length = 169 Score = 207 bits (527), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 96/143 (67%), Positives = 117/143 (81%) Query: 15 IIAERKEMAGAMLPILHGIQEKVGYIPADAVPMIAGELNVSRAEVHGVISFYHFFRQEPA 74 I+A R++M GA+LPILH IQ+ G+IPADAV ++A LN+SRAEVHGVI+FYH FR+ PA Sbjct: 21 IVAARRDMPGALLPILHDIQDSQGFIPADAVSVVARALNLSRAEVHGVITFYHHFRERPA 80 Query: 75 GRHVVQVCRAEACQARGSEALAEHAQNVLGCGFHDTSADGQFTLEPVYCLGQCAIGPNLT 134 GR VVQVCRAEACQ+ G++ALA HA+ LGC FH+T+ADGQFTLEPVYCLGQCA GP +T Sbjct: 81 GRTVVQVCRAEACQSVGADALAAHARKALGCDFHETTADGQFTLEPVYCLGQCACGPAMT 140 Query: 135 LDDELHARVDADKFKRLIQAKRE 157 + D LH RVD +F +LI A RE Sbjct: 141 IGDRLHGRVDMQRFDKLIDAVRE 163 >ref|YP_002004649.1| NAD-dependent formate dehydrogenase subunit gamma [Cupriavidus taiwanensis LMG 19424] emb|CAQ68580.1| NAD-dependent formate dehydrogenase gamma subunit [Cupriavidus taiwanensis LMG 19424] Length = 181 Score = 198 bits (504), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 94/137 (68%), Positives = 111/137 (81%) Query: 20 KEMAGAMLPILHGIQEKVGYIPADAVPMIAGELNVSRAEVHGVISFYHFFRQEPAGRHVV 79 + M GA+LPILH IQ+ G+IP AVP+IA LN+SRAEVHGVI+FYH FRQ+PAGRHVV Sbjct: 31 QHMPGALLPILHEIQDTQGFIPDTAVPVIARALNLSRAEVHGVITFYHHFRQQPAGRHVV 90 Query: 80 QVCRAEACQARGSEALAEHAQNVLGCGFHDTSADGQFTLEPVYCLGQCAIGPNLTLDDEL 139 QVCRAEACQA G+ ALAEHAQ LGCGFH+TSADGQ TLEPVYCLGQCA GP + + ++L Sbjct: 91 QVCRAEACQAVGAGALAEHAQRALGCGFHETSADGQVTLEPVYCLGQCACGPAVMVGEQL 150 Query: 140 HARVDADKFKRLIQAKR 156 H VDA +F L++ R Sbjct: 151 HGYVDAARFDALVRTLR 167