BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0009.p (208 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774895.1| LysR family transcription regulator protein ... 412 e-113 ref|ZP_04681154.1| Transcriptional regulator, LysR family [Ochro... 133 1e-29 ref|YP_434309.1| transcriptional regulator [Hahella chejuensis K... 130 1e-28 ref|NP_435433.1| Transcriptional regulator, LysR family [Sinorhi... 126 2e-27 gb|AEG07621.1| transcriptional regulator, LysR family [Sinorhizo... 126 2e-27 ref|ZP_01878700.1| putative LysR-type regulator [Roseovarius sp.... 118 6e-25 ref|YP_156574.1| LysR family transcriptional regulator [Idiomari... 100 2e-19 ref|YP_437986.1| transcriptional regulator [Hahella chejuensis K... 87 2e-15 ref|YP_003951156.1| LysR family transcriptional regulator [Stigm... 74 2e-11 ref|ZP_08254907.1| Transcriptional regulator, LysR family protei... 74 2e-11 >ref|YP_003774895.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62987.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 282 Score = 412 bits (1060), Expect = e-113, Method: Compositional matrix adjust. Identities = 207/208 (99%), Positives = 207/208 (99%) Query: 1 VRILMPDYPAQVVAQPLYRELADSAGALTLEFQPWQGDAHAAASLESGHTELVLGAITPN 60 VRILMPDYPAQVVAQPLYRELADSAGALTLEFQPWQGDAHAAASLESGHTELVLGAITPN Sbjct: 75 VRILMPDYPAQVVAQPLYRELADSAGALTLEFQPWQGDAHAAASLESGHTELVLGAITPN 134 Query: 61 ASLRGRDVLQERCVAVMRRDHPAAQGLTLAKWLAHPQLRISCHDTLNRMLDEQLATQGHR 120 ASLR RDVLQERCVAVMRRDHPAAQGLTLAKWLAHPQLRISCHDTLNRMLDEQLATQGHR Sbjct: 135 ASLRVRDVLQERCVAVMRRDHPAAQGLTLAKWLAHPQLRISCHDTLNRMLDEQLATQGHR 194 Query: 121 ARIGMVIPNFLMAPALLHGSDLIALMPMHCVPAASAAHPVALSCLRPPLPLDAPPLRLLH 180 ARIGMVIPNFLMAPALLHGSDLIALMPMHCVPAASAAHPVALSCLRPPLPLDAPPLRLLH Sbjct: 195 ARIGMVIPNFLMAPALLHGSDLIALMPMHCVPAASAAHPVALSCLRPPLPLDAPPLRLLH 254 Query: 181 HRRHAEHAAVSQVAQALERIVRQHLDGR 208 HRRHAEHAAVSQVAQALERIVRQHLDGR Sbjct: 255 HRRHAEHAAVSQVAQALERIVRQHLDGR 282 >ref|ZP_04681154.1| Transcriptional regulator, LysR family [Ochrobactrum intermedium LMG 3301] gb|EEQ96660.1| Transcriptional regulator, LysR family [Ochrobactrum intermedium LMG 3301] Length = 306 Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 74/209 (35%), Positives = 117/209 (55%), Gaps = 7/209 (3%) Query: 1 VRILMPDYPAQVVAQPLYRELADSAGALTLEFQPWQGDAHAAASLESGHTELVLGAITPN 60 +R+ M DYPA V PL + LA +A + + QPW G A +L +G ++L L ++ P+ Sbjct: 98 IRVCMADYPAIFVIGPLLKTLAHTAPGINIIVQPWHGAEAARVALVTGESDLAL-SVFPD 156 Query: 61 A--SLRGRDVLQERCVAVMRRDHPAAQGLTLAKWLAHPQLRISCHDTLNRMLDEQLATQG 118 A L+ R +L+E + MRRDH AA +L WL +P + +S + +D LA +G Sbjct: 157 ADKELQRRLLLEENYIIAMRRDHAAANAFSLESWLEYPHILVSGRGDDSSPVDRTLAERG 216 Query: 119 HRARIGMVIPNFLMAPALLHGSDLIALMPMHCVPAASAAHPVALSCLRPPLPLDAPPLRL 178 R+G+V+PNF M P LL +D+IA++P C+P ++ +L+ PP+P+ PL + Sbjct: 217 LSRRVGVVVPNFDMVPELLANTDMIAMLPSRCMPEDTS----SLAAFPPPIPVAGFPLHI 272 Query: 179 LHHRRHAEHAAVSQVAQALERIVRQHLDG 207 H+R E V V + L RI+ + G Sbjct: 273 AWHKRRQEDRGVQYVIEQLVRIMMEKRTG 301 >ref|YP_434309.1| transcriptional regulator [Hahella chejuensis KCTC 2396] gb|ABC29884.1| Transcriptional regulator [Hahella chejuensis KCTC 2396] Length = 291 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 76/203 (37%), Positives = 109/203 (53%), Gaps = 13/203 (6%) Query: 1 VRILMPDYPAQVVAQPLYRELADSAGALTLEFQPWQGDAHAAASLESGHTELVLGAITPN 60 +RILM D+P + PL++ L SA L L QPW G A L G +L + ++ PN Sbjct: 98 IRILMADFPVSALLGPLHQRLITSAPNLDLIVQPWHGAKSALEQLAKGEADLAV-SVFPN 156 Query: 61 --ASLRGRDVLQERCVAVMRRDHPAAQGLTLAKWLAHPQLRISCHDTLNRMLDEQLATQG 118 AS R ++L E +MR+DHPAAQ L +WLA+P + +S + +D+ L +G Sbjct: 157 VGASFRCVELLYEDYCVLMRKDHPAAQNFNLQQWLAYPHVLVSGRGDADSPVDQTLQARG 216 Query: 119 HRARIGMVIPNFLMAPALLHGSDLIALMPMHCVPAASAAHPVALSCLRPPLPLDAPPLRL 178 R R+G+V+P F MAP DLIAL+P HCVP + + PP+P++ PL L Sbjct: 217 LRRRVGLVVPYFQMAP------DLIALLPTHCVPQDTT----KFTVFPPPIPVEGFPLHL 266 Query: 179 LHHRRHAEHAAVSQVAQALERIV 201 H R AVS V + + + Sbjct: 267 AWHVRKHGDQAVSHVVEVIREVT 289 >ref|NP_435433.1| Transcriptional regulator, LysR family [Sinorhizobium meliloti 1021] gb|AAK64845.1| Transcriptional regulator, LysR family [Sinorhizobium meliloti 1021] Length = 295 Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 75/203 (36%), Positives = 108/203 (53%), Gaps = 6/203 (2%) Query: 1 VRILMPDYPAQVVAQPLYRELADSAGALTLEFQPWQGDAHAAASLESGHTELVLGAIT-P 59 +RI M DYPA V L REL SA + L Q W G A ++L G +L + T P Sbjct: 98 LRITMADYPALFVIAQLQRELQPSAPGIDLVIQSWHGGDAARSALVDGTADLAVSVFTAP 157 Query: 60 NASLRGRDVLQERCVAVMRRDHPAAQGLTLAKWLAHPQLRISCHDTLNRMLDEQLATQGH 119 + L ++L E V VMR HPAA+ L WL++P + +S LD +L+ G Sbjct: 158 DDDLHREELLTEHYVVVMRAGHPAAEAFDLNAWLSYPHILVSGRGDTTTPLDAELSRFGL 217 Query: 120 RARIGMVIPNFLMAPALLHGSDLIALMPMHCVPAASAAHPVALSCLRPPLPLDAPPLRLL 179 R+G+V+PNF M P+LL SD+IA++P P+ +L PP+P+ L + Sbjct: 218 SRRVGLVVPNFQMVPSLLQDSDMIAMLPSRATPSGG-----SLVSFLPPIPVPGFQLHMA 272 Query: 180 HHRRHAEHAAVSQVAQALERIVR 202 HRR A+ AA+ VA+ L ++R Sbjct: 273 WHRRRAKDAALQHVARILGALLR 295 >gb|AEG07621.1| transcriptional regulator, LysR family [Sinorhizobium meliloti BL225C] gb|AEH81455.1| Transcriptional regulator, LysR family [Sinorhizobium meliloti SM11] Length = 295 Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 75/203 (36%), Positives = 108/203 (53%), Gaps = 6/203 (2%) Query: 1 VRILMPDYPAQVVAQPLYRELADSAGALTLEFQPWQGDAHAAASLESGHTELVLGAIT-P 59 +RI M DYPA V L REL SA + L Q W G A ++L G +L + T P Sbjct: 98 LRITMADYPALFVIAQLQRELQPSAPGIDLVIQSWHGGDAARSALVDGTADLAVSVFTAP 157 Query: 60 NASLRGRDVLQERCVAVMRRDHPAAQGLTLAKWLAHPQLRISCHDTLNRMLDEQLATQGH 119 + L ++L E V VMR HPAA+ L WL++P + +S LD +L+ G Sbjct: 158 DDDLHREELLTEHYVVVMRAGHPAAEAFDLNAWLSYPHILVSGRGDTTTPLDAELSRFGL 217 Query: 120 RARIGMVIPNFLMAPALLHGSDLIALMPMHCVPAASAAHPVALSCLRPPLPLDAPPLRLL 179 R+G+V+PNF M P+LL SD+IA++P P+ +L PP+P+ L + Sbjct: 218 SRRVGLVVPNFQMVPSLLQDSDMIAMLPSRATPSGG-----SLVSFLPPIPVPGFQLHMA 272 Query: 180 HHRRHAEHAAVSQVAQALERIVR 202 HRR A+ AA+ VA+ L ++R Sbjct: 273 WHRRRAKDAALQHVARILGALLR 295 >ref|ZP_01878700.1| putative LysR-type regulator [Roseovarius sp. TM1035] gb|EDM32803.1| putative LysR-type regulator [Roseovarius sp. TM1035] Length = 301 Score = 118 bits (295), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 66/204 (32%), Positives = 106/204 (51%), Gaps = 4/204 (1%) Query: 1 VRILMPDYPAQVVAQPLYRELADSAGALTLEFQPWQGDAHAAASLESGHTELVLGAITPN 60 VRI D PA ++A PL +++ +A +T+ F+PWQG + G T++ + + Sbjct: 98 VRITAADDPATLLACPLIEDISRTAPGVTIVFKPWQGQEAVTREILDGATDIAIAVLDRE 157 Query: 61 -ASLRGRDVLQERCVAVMRRDHPAAQGLTLAKWLAHPQLRISCHDTLNRMLDEQLATQGH 119 ++ R ++ V MRRDHPAA G T+ WLA P + +S L LD QLA G Sbjct: 158 IENIEIRKLIDVDYVVAMRRDHPAAAGFTIDAWLAWPHVVVSGQGDLRTPLDAQLAASGR 217 Query: 120 RARIGMVIPNFLMAPALLHGSDLIALMPMHCVPAASAAHPVALSCLRPPLPLDAPPLRLL 179 R R+G+ +P+F + P +L ++LIA++P V + L +PP+ +D PL + Sbjct: 218 RRRVGLTVPSFQLVPRVLAETNLIAMLPRQSV---ATKVEFDLVFHQPPVSVDGFPLHIA 274 Query: 180 HHRRHAEHAAVSQVAQALERIVRQ 203 H R AV V + + + R+ Sbjct: 275 WHARQNRDTAVQHVVEVIRAVFRE 298 >ref|YP_156574.1| LysR family transcriptional regulator [Idiomarina loihiensis L2TR] gb|AAV83025.1| Transcriptional regulator, LysR family [Idiomarina loihiensis L2TR] Length = 331 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 62/206 (30%), Positives = 96/206 (46%), Gaps = 8/206 (3%) Query: 1 VRILMPDYPAQVVAQPLYRELADSAGALTLEFQPWQGDAHAAASLESGHTELVLGAI--T 58 VR++M D P +V L +L+ SA + L PW+ A LE+G ++ + Sbjct: 125 VRLIMADQPGLIVMTHLLTKLSTSAPKVNLSLLPWRSSKDALHRLENGEADIAISTFPAL 184 Query: 59 PNASLRGRDVLQERCVAVMRRDHPAAQGLTLAKWLAHPQLRISCHDTLNRMLDEQLATQG 118 P R + + E V MR HPAAQ +WLA P + +S ++E LA QG Sbjct: 185 PPKFYR-QQIAYESYVVAMRASHPAAQKFNADEWLAWPHIVVSGEGNARGSVEEVLAQQG 243 Query: 119 HRARIGMVIPNFLMAPALLHGSDLIALMPMHCVPAASAAHPVALSCLRPPLPLDAPPLRL 178 +G V+PNF M L+ +D+IA PM+C+ + P L+ PP+ + L L Sbjct: 244 KVRHVGAVVPNFTMIDPLIKATDMIATTPMNCL-----SDPQGLAIFEPPIAVPGFSLHL 298 Query: 179 LHHRRHAEHAAVSQVAQALERIVRQH 204 H R V V + L+ + ++ Sbjct: 299 AWHARRDSDLVVKHVIETLQHLFQKE 324 >ref|YP_437986.1| transcriptional regulator [Hahella chejuensis KCTC 2396] gb|ABC33561.1| Transcriptional regulator [Hahella chejuensis KCTC 2396] Length = 329 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 58/192 (30%), Positives = 94/192 (48%), Gaps = 5/192 (2%) Query: 1 VRILMPDYPAQVVAQPLYRELADSAGALTLEFQPWQGDAHAAASLESGHTELVLGAITP- 59 R+ M D ++ P+ R + A + L P G+ ++ + L +G +L++G + Sbjct: 96 FRVGMSDITTDLIWLPMRRMVETEAPNIDLHAVPANGN-NSESILTNGEVDLIVGVMQEF 154 Query: 60 NASLRGRDVLQERCVAVMRRDHP-AAQGLTLAKWLAHPQLRISCHDTLNRMLDEQLATQG 118 S R + + V MR+DHP AA+ LTL K+L L +S +D L+ QG Sbjct: 155 RTSFRNDFLFESDYVCAMRKDHPLAAEPLTLEKYLKADHLLVSLTGEATGFVDITLSQQG 214 Query: 119 HRARIGMVIPNFLMAPALLHGSDLIALMPMHCVPAASAAHPVALSCLRPPLPLDAPPLRL 178 R+ M + +F PALL GSDLI+++P + A A +L +PPL + P+ + Sbjct: 215 LSRRVAMTVNHFASVPALLEGSDLISIVPNMVI--AKGAKCGSLHVTKPPLEIRPTPVSM 272 Query: 179 LHHRRHAEHAAV 190 + H RH V Sbjct: 273 IWHARHDRDPGV 284 >ref|YP_003951156.1| LysR family transcriptional regulator [Stigmatella aurantiaca DW4/3-1] gb|ADO69329.1| Transcriptional regulator, LysR family [Stigmatella aurantiaca DW4/3-1] Length = 313 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 62/199 (31%), Positives = 92/199 (46%), Gaps = 13/199 (6%) Query: 7 DYPAQVVAQPLYRELADSAGALTLEFQP----WQGDAHAAASLESGHTELVLGAI-TPNA 61 DY A + PL L A + L+ +P W + LESG +L++ A P Sbjct: 116 DYFASIFLPPLLALLGQEAPRVDLDLRPIDSRWTPEL-----LESGAVDLIIQAFPNPAP 170 Query: 62 SLRGRDVLQERCVAVMRRDHPAA-QGLTLAKWLAHPQLRISCHDTLNRMLDEQLATQGHR 120 +LR + + QE ++R+DHP + L LA++L P + IS ++D+ LA QG Sbjct: 171 ALRQQKLFQEEFACLVRKDHPEVNRRLELAQYLRLPHVLISPQGQGEGIVDQALAKQGLS 230 Query: 121 ARIGMVIPNFLMAPALLHGSDLIALMPMHCVPAASAAHPVALSCLRPPLPLDAPPLRLLH 180 RI + +P FL AP ++ SDL+ P + P L L+PPL L L Sbjct: 231 RRIALRVPFFLAAPLVITRSDLVLTAPRRMAEGFAQGWP--LQVLKPPLALPTFNAVQLW 288 Query: 181 HRRHAEHAAVSQVAQALER 199 H R + A + AL R Sbjct: 289 HERFEDDPAHRWLRGALSR 307 >ref|ZP_08254907.1| Transcriptional regulator, LysR family protein [Plautia stali symbiont] Length = 303 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 51/196 (26%), Positives = 98/196 (50%), Gaps = 5/196 (2%) Query: 7 DYPAQVVAQPLYRELADSAGALTLEFQPWQGDAHAAASLESGHTELVLGAITPNASLR-- 64 +YP V+ L + L D+A +++L Q + HA L++G ++ +G + ++ R Sbjct: 105 EYPTFVLLPSLMQALPDAAPSVSLNVQAFTNRDHAVDLLDAGTIDVAIGVMPTHSDSRII 164 Query: 65 GRDVLQERCVAVMRRDHPAA-QGLTLAKWLAHPQLRISCHDTLNRMLDEQLATQGHRARI 123 R +L++ V ++ +HPAA +G+ + +LA P + +S L ++D+ LA QG + R+ Sbjct: 165 SRPILRDEFVTIVASNHPAARRGMNMESYLALPHILVSPEGELYGLVDQVLAQQGKKRRL 224 Query: 124 GMVIPNFLMAPALLHGSDLIALMPMHCVPAASAAHPVALSCLRPPLPLDAPPLRLLHHRR 183 G+ + P+++ + + A + A A+ + L PPL L L+ HRR Sbjct: 225 GLTLQQMFAVPSIVAQTHMTATVMKRVALHAQASRQLVL--FPPPLSLPEMVFNLIWHRR 282 Query: 184 HAEHAAVSQVAQALER 199 H A + +E+ Sbjct: 283 SDAHPAQQWFREFIEQ 298