BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0001.p (627 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_868895.1| DNA helicase related protein [Shewanella sp. AN... 633 e-179 ref|NP_638480.1| DNA helicase related protein [Xanthomonas campe... 626 e-177 gb|EGH29883.1| DNA helicase related protein [Pseudomonas syringa... 615 e-174 gb|EGH41597.1| DNA helicase related protein [Pseudomonas syringa... 615 e-174 gb|EGH79589.1| DNA helicase related protein [Pseudomonas syringa... 613 e-173 ref|YP_237052.1| DNA helicase related protein [Pseudomonas syrin... 605 e-171 gb|ADP96964.1| conserved hypothetical protein [Marinobacter adha... 603 e-170 ref|YP_004474243.1| DNA helicase related protein [Pseudomonas fu... 570 e-160 ref|ZP_06688291.1| conserved hypothetical protein [Achromobacter... 566 e-159 emb|CAQ18488.1| putative dna helicase related protein (partial s... 541 e-151 >ref|YP_868895.1| DNA helicase related protein [Shewanella sp. ANA-3] gb|ABK47489.1| DNA helicase related protein [Shewanella sp. ANA-3] Length = 1094 Score = 633 bits (1633), Expect = e-179, Method: Compositional matrix adjust. Identities = 318/598 (53%), Positives = 409/598 (68%), Gaps = 4/598 (0%) Query: 11 ASHTDEKPRRQR---RGFEAWIEARAEENARRDTSQRQALWKAAVKEYQDAKTAVDQIQA 67 + +DE P + +GF W+ A AE N R QRQALW+ A+ +Y+ AKT V + A Sbjct: 484 SEESDEAPADKEEGPKGFLGWLSACAEVNKTRSPEQRQALWQEAIADYEAAKTEVRRTCA 543 Query: 68 YVNPMRKLLSELQVARETVATTELALIALRKNAKEVDDELSDFDARQRDPAATAMEEILV 127 N +R+L+ L R+ VA AL L + ++LS DA + PA+ A+++ L Sbjct: 544 AANRIRELIQALCKTRKQVAEQSEALRTLESKLADAVNQLSRLDAEENRPASMALKQCLY 603 Query: 128 ELENYLGSRPGFWANLFSLGKKKKLWTERRTFLDRKLTAAEKKLEHVDRVFSQLITRQKN 187 ELE + +PGFWA +FS ++ W +R L+ A+ + + R+ QL +++ Sbjct: 604 ELEVHQARKPGFWAKVFSFWGAQRDWDAKRKRLESHHDLAKSEFSRIARLTKQLGASRES 663 Query: 188 LSDQILTTEQQLADQKKYSAEKQTDSVSLAVKFEAKHLILRLREEQPDPQNPIEMLEPWK 247 L T + L + D++ +A + +A HL+ L + + IE+ EPW+ Sbjct: 664 LEKHTADTRRALQRLRSQCQAHMQDAIDVAREGQADHLLAWLEDGAIGRGDAIELAEPWR 723 Query: 248 IDGWREARARVFIKALKLHRTFFSLEASRMRSNLKFINRILTGGRFESVSDASLRSVWAS 307 +GWR+ARARVFI+ALKLHR FF LEASRMRSNL IN +LTG R+ +S ++RS WAS Sbjct: 724 FEGWRQARARVFIQALKLHRVFFELEASRMRSNLFLINGMLTGTRYHGISRDAIRSAWAS 783 Query: 308 LFMLVPVLSSTFASFARTFGSLGKGDIGWLLVDEAGQAPPQAAVGALWRAKRAVLVGDTF 367 LFM+VPVLSSTFASFAR+FGSLG GDIGWLLVDEAGQA PQAAVGALWR++RA+LVGD Sbjct: 784 LFMVVPVLSSTFASFARSFGSLGGGDIGWLLVDEAGQASPQAAVGALWRSRRALLVGDPL 843 Query: 368 QLKPIINVSNAALEHMRKRYGVDPYWIPKTLSAQILADAATRWGRLVGPTAHERRWAGLP 427 QLKPI+ VS+A LEHMR RY VD +W+P SAQ LAD ATRWGR+ GPT + W GLP Sbjct: 844 QLKPIVTVSDAVLEHMRTRYQVDTHWLPNRQSAQTLADEATRWGRMAGPT-DGKTWVGLP 902 Query: 428 LVVHRRCDRPMYDIANRIAYGGAMVYGTKDPSPERETPASIVTGWIDVKGPSNGNWVPEE 487 LVVHRRCD+PMY +ANRIAY GAMVYGT P P++ETPAS +TGWI G S NWVP E Sbjct: 903 LVVHRRCDKPMYALANRIAYDGAMVYGTLTPRPDKETPASFLTGWIQASGASQDNWVPAE 962 Query: 488 GNALHRLLQVLHEDGVANKDISVITPFRAVRDELPRYVFDEMVSGTIHTMQGKESDVVIL 547 G AL LL +LH DGV +DI+VITP++AV++ L + D+M+SGTIHTMQGKE+ +VIL Sbjct: 963 GKALQDLLTLLHRDGVKAEDIAVITPYKAVQENLKSMLSDKMISGTIHTMQGKEAPIVIL 1022 Query: 548 VLGGSSHGGDARGWAVAEPNLINVAVTRAKRRLYVIGDRDSWCRHPLFAEVMDWLPVQ 605 VLGG++ G AR WAV+EPNL+NVA TRAKRRLYVIGDR+ W LF +VMD LP+Q Sbjct: 1023 VLGGNTAGSGARNWAVSEPNLLNVAATRAKRRLYVIGDRNDWKNRALFCDVMDLLPLQ 1080 >ref|NP_638480.1| DNA helicase related protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gb|AAM42404.1| DNA helicase related protein [Xanthomonas campestris pv. campestris str. ATCC 33913] Length = 1087 Score = 626 bits (1615), Expect = e-177, Method: Compositional matrix adjust. Identities = 319/598 (53%), Positives = 411/598 (68%), Gaps = 6/598 (1%) Query: 8 EDDASHTDEKPRRQRRGFEAWIEARAEENARRDTSQRQALWKAAVKEYQDAKTAVDQIQA 67 ED D+ P+ GF W+ E NA R QRQALW+ AV +Y+ K + Sbjct: 490 EDAPPEEDKGPK----GFLGWLNVSVEANADRSPEQRQALWQQAVSDYEAVKAEERKACN 545 Query: 68 YVNPMRKLLSELQVARETVATTELALIALRKNAKEVDDELSDFDARQRDPAATAMEEILV 127 + +R+L+ + R+T+A L A ++ EV ++LS D + PA A+++ + Sbjct: 546 DASRIRELILAILKIRKTIAEDSEKLRAFEQSLIEVANKLSRLDNEEGGPANMALKKCID 605 Query: 128 ELENYLGSRPGFWANLFSLGKKKKLWTERRTFLDRKLTAAEKKLEHVDRVFSQLITRQKN 187 LE L +PGFW+NLFSLG ++ W R L+ + A+ + + R+ QL + + Sbjct: 606 ALEK-LPKKPGFWSNLFSLGNARRDWRTARKLLESQHDIAKAEFARITRLTQQLDSDKAQ 664 Query: 188 LSDQILTTEQQLADQKKYSAEKQTDSVSLAVKFEAKHLILRLREEQPDPQNPIEMLEPWK 247 + +I + L ++ +D++ LA +A HL+ L++ + IE+ EPW+ Sbjct: 665 VEGKIAEARRVLQGSQQQDKTLTSDALELATTHQADHLLAWLKDNAIGRGDVIELAEPWR 724 Query: 248 IDGWREARARVFIKALKLHRTFFSLEASRMRSNLKFINRILTGGRFESVSDASLRSVWAS 307 I+GWR+ARARVFI+ALKLHRTFF LEASR+RSNL IN +L G RF+ +S A++RS WAS Sbjct: 725 IEGWRKARARVFIQALKLHRTFFELEASRLRSNLFMINGMLGGSRFQGMSRAAIRSAWAS 784 Query: 308 LFMLVPVLSSTFASFARTFGSLGKGDIGWLLVDEAGQAPPQAAVGALWRAKRAVLVGDTF 367 LFM+VPVLSSTFASFAR+FGSLG +IGWLLVDEAGQA PQAAVGALWR++RA+LVGD Sbjct: 785 LFMVVPVLSSTFASFARSFGSLGASEIGWLLVDEAGQAAPQAAVGALWRSRRALLVGDPL 844 Query: 368 QLKPIINVSNAALEHMRKRYGVDPYWIPKTLSAQILADAATRWGRLVGPTAHERRWAGLP 427 QLKPI+ VS+A LEHMR RYGVD +WIP SAQ+LAD AT WGR+ GP A + W GLP Sbjct: 845 QLKPIVTVSDAVLEHMRTRYGVDAHWIPNQKSAQVLADEATPWGRMAGP-AGGKSWVGLP 903 Query: 428 LVVHRRCDRPMYDIANRIAYGGAMVYGTKDPSPERETPASIVTGWIDVKGPSNGNWVPEE 487 LVVHRRCDRPMY +ANRIAY GAMVYGT P ++ET AS++TGWI + G S GNWVP E Sbjct: 904 LVVHRRCDRPMYALANRIAYDGAMVYGTIAPRADKETRASLLTGWIHISGTSEGNWVPAE 963 Query: 488 GNALHRLLQVLHEDGVANKDISVITPFRAVRDELPRYVFDEMVSGTIHTMQGKESDVVIL 547 G L LL+ LH DGV KDISVITPF+AV+ L R + +MVSGTIHTMQGKE+ VVI+ Sbjct: 964 GQVLRDLLKRLHGDGVEAKDISVITPFKAVQQNLKRMLPGKMVSGTIHTMQGKEASVVIV 1023 Query: 548 VLGGSSHGGDARGWAVAEPNLINVAVTRAKRRLYVIGDRDSWCRHPLFAEVMDWLPVQ 605 +LGG++ G AR WAV+EPNL+NVA TRAKRRLYVIGDR+ W PLF +VMD LP+Q Sbjct: 1024 ILGGNTAGSGARNWAVSEPNLLNVAATRAKRRLYVIGDRNDWKHRPLFCDVMDLLPIQ 1081 >gb|EGH29883.1| DNA helicase related protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 745 Score = 615 bits (1586), Expect = e-174, Method: Compositional matrix adjust. Identities = 315/601 (52%), Positives = 407/601 (67%), Gaps = 5/601 (0%) Query: 8 EDDASHTDEKPRRQRRG---FEAWIEARAEENARRDTSQRQALWKAAVKEYQDAKTAVDQ 64 +D S +++ P + +G F W+ AE NA R QRQALW+ AV +Y+ K + Sbjct: 141 DDSESQSEDAPPEEEKGPKGFWGWLNVSAEVNAVRSPEQRQALWQQAVSDYEAVKAQERK 200 Query: 65 IQAYVNPMRKLLSELQVARETVATTELALIALRKNAKEVDDELSDFDARQRDPAATAMEE 124 + +R+L+ + AR+ +A L + ++ EV +ELS D + PA TA+++ Sbjct: 201 ACRDASRIRELILAILEARKKIAEDSEKLRSFEQSLIEVANELSRLDNEEGGPANTALKK 260 Query: 125 ILVELENYLGSRPGFWANLFSLGKKKKLWTERRTFLDRKLTAAEKKLEHVDRVFSQLITR 184 L L L RPGFW+N+FSLG ++ W R L+ + A+ + + R+ QL Sbjct: 261 CLDAL-GMLPPRPGFWSNVFSLGNARRDWNAARALLESQRDVAKAEFARITRLTQQLDID 319 Query: 185 QKNLSDQILTTEQQLADQKKYSAEKQTDSVSLAVKFEAKHLILRLREEQPDPQNPIEMLE 244 + +I + L ++ D+ LA +A HL+ L++ + IE+ E Sbjct: 320 KVQAERKITDARRVLQGSQQQDQTLTRDAWELATTHQADHLLAWLKDNAIGDGDAIELAE 379 Query: 245 PWKIDGWREARARVFIKALKLHRTFFSLEASRMRSNLKFINRILTGGRFESVSDASLRSV 304 PW+I+GWR+ARARVFI+ALKLH+TFF LEASR+RSNL IN +LTG RF+ +S +RS Sbjct: 380 PWRIEGWRKARARVFIQALKLHQTFFELEASRLRSNLFMINSLLTGSRFQGLSRDGIRSA 439 Query: 305 WASLFMLVPVLSSTFASFARTFGSLGKGDIGWLLVDEAGQAPPQAAVGALWRAKRAVLVG 364 WASLFM+VPVLSSTFASFAR+FGSLG +IGWLLVDEAGQA PQ AVGALWR++RA+LVG Sbjct: 440 WASLFMVVPVLSSTFASFARSFGSLGASEIGWLLVDEAGQAAPQQAVGALWRSRRALLVG 499 Query: 365 DTFQLKPIINVSNAALEHMRKRYGVDPYWIPKTLSAQILADAATRWGRLVGPTAHERRWA 424 D QLKPI+ VS+A LEHMR RYGVD +WIP SAQ+LAD AT WGR+ GP A + W Sbjct: 500 DPLQLKPIVTVSDAVLEHMRTRYGVDAHWIPNQKSAQVLADEATPWGRMAGP-AGGKTWV 558 Query: 425 GLPLVVHRRCDRPMYDIANRIAYGGAMVYGTKDPSPERETPASIVTGWIDVKGPSNGNWV 484 GLPLVVHRRCD+PMY +ANRIAY GAMVYGT P ++ET AS+ TGWI V G S GNWV Sbjct: 559 GLPLVVHRRCDKPMYALANRIAYDGAMVYGTIAPRADKETLASLPTGWIHVSGSSEGNWV 618 Query: 485 PEEGNALHRLLQVLHEDGVANKDISVITPFRAVRDELPRYVFDEMVSGTIHTMQGKESDV 544 P EG L LL+ LH DG+ KDISVITPF+AV+ L R + ++VSGTIHTMQGKE+ + Sbjct: 619 PAEGQVLRDLLKRLHGDGIEAKDISVITPFKAVQQNLKRILRSKLVSGTIHTMQGKEASI 678 Query: 545 VILVLGGSSHGGDARGWAVAEPNLINVAVTRAKRRLYVIGDRDSWCRHPLFAEVMDWLPV 604 VI+VLGG++ G AR WAV+EPNL+NVA TRAKRRLYVIGDR+ W LF +VMD LP+ Sbjct: 679 VIVVLGGNTAGAGARNWAVSEPNLLNVAATRAKRRLYVIGDRNDWRHRQLFCDVMDLLPL 738 Query: 605 Q 605 Q Sbjct: 739 Q 739 >gb|EGH41597.1| DNA helicase related protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 712 Score = 615 bits (1586), Expect = e-174, Method: Compositional matrix adjust. Identities = 315/601 (52%), Positives = 408/601 (67%), Gaps = 5/601 (0%) Query: 8 EDDASHTDEKPRRQRRG---FEAWIEARAEENARRDTSQRQALWKAAVKEYQDAKTAVDQ 64 +D S +++ P + +G F W+ AE NA R QRQALW+ AV +Y+ K + Sbjct: 108 DDSESQSEDAPPEEEKGPKGFWGWLNVSAEVNAVRSPEQRQALWQQAVSDYEAVKAQERK 167 Query: 65 IQAYVNPMRKLLSELQVARETVATTELALIALRKNAKEVDDELSDFDARQRDPAATAMEE 124 + +R+L+ + AR+ +A L + ++ EV +ELS D + PA TA+++ Sbjct: 168 ACRDASRIRELILAILEARKKIAEDSEKLRSFEQSLIEVANELSRLDNEEGGPANTALKK 227 Query: 125 ILVELENYLGSRPGFWANLFSLGKKKKLWTERRTFLDRKLTAAEKKLEHVDRVFSQLITR 184 L L L RPGFW+N+FSLG ++ W R L+ + A+ + + R+ QL Sbjct: 228 CLDAL-GMLPPRPGFWSNVFSLGNARRDWNAARALLESQRDVAKAEFARITRLTQQLDID 286 Query: 185 QKNLSDQILTTEQQLADQKKYSAEKQTDSVSLAVKFEAKHLILRLREEQPDPQNPIEMLE 244 + +I + L ++ D+ LA +A HL+ L++ + IE+ E Sbjct: 287 KVQAERKITDARRVLQGSQQQDQTLTRDAWELATTHQADHLLAWLKDNAIGDGDAIELAE 346 Query: 245 PWKIDGWREARARVFIKALKLHRTFFSLEASRMRSNLKFINRILTGGRFESVSDASLRSV 304 PW+I+GWR+ARARVFI+ALKLH+TFF LEASR+RSNL IN +LTG RF+ +S ++RS Sbjct: 347 PWRIEGWRKARARVFIQALKLHQTFFELEASRLRSNLFMINSLLTGSRFQGLSRDAIRSA 406 Query: 305 WASLFMLVPVLSSTFASFARTFGSLGKGDIGWLLVDEAGQAPPQAAVGALWRAKRAVLVG 364 WASLFM+VPVLSSTFASFAR+FGSLG +IGWLLVDEAGQA PQ AVGALWR++RA+LVG Sbjct: 407 WASLFMVVPVLSSTFASFARSFGSLGASEIGWLLVDEAGQAAPQQAVGALWRSRRALLVG 466 Query: 365 DTFQLKPIINVSNAALEHMRKRYGVDPYWIPKTLSAQILADAATRWGRLVGPTAHERRWA 424 D QLKPI+ VS+A LEHMR RYGVD +WIP SAQ+LAD AT WGR+ GP A + W Sbjct: 467 DPLQLKPIVTVSDAVLEHMRTRYGVDAHWIPNQKSAQVLADEATPWGRMAGP-AGGKTWV 525 Query: 425 GLPLVVHRRCDRPMYDIANRIAYGGAMVYGTKDPSPERETPASIVTGWIDVKGPSNGNWV 484 GLPLVVHRRCD+PMY +ANRIAY GAMVYGT P ++ET AS+ TGWI + G S GNWV Sbjct: 526 GLPLVVHRRCDKPMYALANRIAYDGAMVYGTIAPRADKETLASLPTGWIHISGSSEGNWV 585 Query: 485 PEEGNALHRLLQVLHEDGVANKDISVITPFRAVRDELPRYVFDEMVSGTIHTMQGKESDV 544 P EG L LL+ LH DGV KDISVITPF+AV+ L R + ++VSGTIHTMQGKE+ + Sbjct: 586 PAEGQVLRDLLKRLHGDGVEAKDISVITPFKAVQQNLKRILRGKLVSGTIHTMQGKEASI 645 Query: 545 VILVLGGSSHGGDARGWAVAEPNLINVAVTRAKRRLYVIGDRDSWCRHPLFAEVMDWLPV 604 VI+VLGG++ G AR WAV+EPNL+NVA TRAKRRLYVIGDR+ W LF +VMD LP+ Sbjct: 646 VIVVLGGNTAGAGARNWAVSEPNLLNVAATRAKRRLYVIGDRNDWKHRQLFCDVMDLLPL 705 Query: 605 Q 605 Q Sbjct: 706 Q 706 >gb|EGH79589.1| DNA helicase related protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 596 Score = 613 bits (1581), Expect = e-173, Method: Compositional matrix adjust. Identities = 313/583 (53%), Positives = 399/583 (68%), Gaps = 2/583 (0%) Query: 23 RGFEAWIEARAEENARRDTSQRQALWKAAVKEYQDAKTAVDQIQAYVNPMRKLLSELQVA 82 +GF W+ AE NA R QRQALW+ AV +Y+ K + + +R+L+ + A Sbjct: 10 KGFWGWLNVSAEVNAVRSPEQRQALWQQAVSDYEAVKAQERKACRDASRIRELILAILEA 69 Query: 83 RETVATTELALIALRKNAKEVDDELSDFDARQRDPAATAMEEILVELENYLGSRPGFWAN 142 R+ +A L + ++ EV +ELS D + PA TA+++ L L L RPGFW+N Sbjct: 70 RKKIAEDSEKLRSFEQSLIEVANELSRLDNEEGGPANTALKKCLDAL-GMLPPRPGFWSN 128 Query: 143 LFSLGKKKKLWTERRTFLDRKLTAAEKKLEHVDRVFSQLITRQKNLSDQILTTEQQLADQ 202 +FSLG ++ W R L+ + A+ + + R+ QL + +I + L Sbjct: 129 VFSLGNARRDWNAARALLESQRDVAKAEFARITRLTQQLDIDKVQAERKITDARRVLQGS 188 Query: 203 KKYSAEKQTDSVSLAVKFEAKHLILRLREEQPDPQNPIEMLEPWKIDGWREARARVFIKA 262 ++ D+ LA +A HL+ L+ + IE+ EPW+I+GWR+ARARVFI+A Sbjct: 189 QQQDQTLTRDAWELATTHQADHLLAWLKNNAIGDGDAIELAEPWRIEGWRKARARVFIQA 248 Query: 263 LKLHRTFFSLEASRMRSNLKFINRILTGGRFESVSDASLRSVWASLFMLVPVLSSTFASF 322 LKLH+TFF LEASR+RSNL IN +LTG RF+ +S ++RS WASLFM+VPVLSSTFASF Sbjct: 249 LKLHQTFFELEASRLRSNLFMINSLLTGSRFQGLSRDAIRSAWASLFMVVPVLSSTFASF 308 Query: 323 ARTFGSLGKGDIGWLLVDEAGQAPPQAAVGALWRAKRAVLVGDTFQLKPIINVSNAALEH 382 AR+FGSLG +IGWLLVDEAGQA PQ AVGALWR++RA+LVGD QLKPI+ VS+A LEH Sbjct: 309 ARSFGSLGASEIGWLLVDEAGQAAPQQAVGALWRSRRALLVGDPLQLKPIVTVSDAVLEH 368 Query: 383 MRKRYGVDPYWIPKTLSAQILADAATRWGRLVGPTAHERRWAGLPLVVHRRCDRPMYDIA 442 MR RYGVD +WIP SAQ+LAD AT WGR+ GP A + W GLPLVVHRRCD+PMY +A Sbjct: 369 MRTRYGVDAHWIPNQKSAQVLADEATPWGRMAGP-AGGKTWVGLPLVVHRRCDKPMYALA 427 Query: 443 NRIAYGGAMVYGTKDPSPERETPASIVTGWIDVKGPSNGNWVPEEGNALHRLLQVLHEDG 502 NRIAY GAMVYGT P ++ET AS+ TGWI V G S GNWVP EG L LL+ LH DG Sbjct: 428 NRIAYDGAMVYGTIAPRADKETLASLPTGWIHVSGSSEGNWVPAEGQVLRDLLKRLHGDG 487 Query: 503 VANKDISVITPFRAVRDELPRYVFDEMVSGTIHTMQGKESDVVILVLGGSSHGGDARGWA 562 V KDISVITPF+AV+ L R + ++VSGTIHTMQGKE+ +VI+VLGG++ G AR WA Sbjct: 488 VEAKDISVITPFKAVQQNLKRILRGKLVSGTIHTMQGKEASIVIVVLGGNTAGAGARNWA 547 Query: 563 VAEPNLINVAVTRAKRRLYVIGDRDSWCRHPLFAEVMDWLPVQ 605 V+EPNL+NVA TRAKRRLYVIGDR+ W LF +VMD LP+Q Sbjct: 548 VSEPNLLNVAATRAKRRLYVIGDRNDWKHRQLFCDVMDLLPLQ 590 >ref|YP_237052.1| DNA helicase related protein [Pseudomonas syringae pv. syringae B728a] gb|AAY39014.1| DNA helicase related protein [Pseudomonas syringae pv. syringae B728a] Length = 1087 Score = 605 bits (1560), Expect = e-171, Method: Compositional matrix adjust. Identities = 314/601 (52%), Positives = 405/601 (67%), Gaps = 6/601 (0%) Query: 9 DDASHTDEK--PRRQR--RGFEAWIEARAEENARRDTSQRQALWKAAVKEYQDAKTAVDQ 64 DD+ + E P ++ +GF W+ AE NA R QRQALW+ AV +Y+ K + Sbjct: 483 DDSENQSEDALPEEEKGPKGFWGWLNVSAEVNAVRSPEQRQALWQQAVSDYEAIKAQERK 542 Query: 65 IQAYVNPMRKLLSELQVARETVATTELALIALRKNAKEVDDELSDFDARQRDPAATAMEE 124 + + +R+L+ + R+ +A L + ++ E+ +EL D + PA A++ Sbjct: 543 ACSDASRIRELILAILEVRKKIAEDSEKLRSFEQSLIEIANELLRLDNEEGGPANMALKT 602 Query: 125 ILVELENYLGSRPGFWANLFSLGKKKKLWTERRTFLDRKLTAAEKKLEHVDRVFSQLITR 184 L L L RPGFW+NLFSLG ++ W R L+ + A+ + E + R+ QL Sbjct: 603 CLDAL-GELPRRPGFWSNLFSLGNARRDWNAARELLEGQRDIAKVEFERITRLTQQLDID 661 Query: 185 QKNLSDQILTTEQQLADQKKYSAEKQTDSVSLAVKFEAKHLILRLREEQPDPQNPIEMLE 244 + I + L ++ D++ LA +A+HL+ L++ + IE+ E Sbjct: 662 KVQAQRTITEARRVLQGSQQQDQTLTRDAMELATIHQAEHLLAWLKDNAIGDGDAIELAE 721 Query: 245 PWKIDGWREARARVFIKALKLHRTFFSLEASRMRSNLKFINRILTGGRFESVSDASLRSV 304 PW+I GWR+ARARVFI+ALKLH+TFF LEASR+RSNL IN +LTG RF+ +S ++RS Sbjct: 722 PWRIQGWRKARARVFIQALKLHQTFFELEASRLRSNLFMINSLLTGSRFQGLSRDAIRSA 781 Query: 305 WASLFMLVPVLSSTFASFARTFGSLGKGDIGWLLVDEAGQAPPQAAVGALWRAKRAVLVG 364 WASLFM+VPVLSSTFASFAR+FGSLG +IGWLLVDEAGQA PQ AVGALWR++RA+LVG Sbjct: 782 WASLFMVVPVLSSTFASFARSFGSLGASEIGWLLVDEAGQAAPQQAVGALWRSRRALLVG 841 Query: 365 DTFQLKPIINVSNAALEHMRKRYGVDPYWIPKTLSAQILADAATRWGRLVGPTAHERRWA 424 D QLKPI+ VS+A LEHMR RYGVD +WIP SAQ+LAD AT WGR+ GP A + W Sbjct: 842 DPLQLKPIVTVSDAVLEHMRTRYGVDAHWIPNQKSAQVLADEATPWGRMAGP-AGGKTWV 900 Query: 425 GLPLVVHRRCDRPMYDIANRIAYGGAMVYGTKDPSPERETPASIVTGWIDVKGPSNGNWV 484 GLPLVVHRRCD+PMY +AN IAY GAMVYGT P ++ET AS+ TGWI V G S GNWV Sbjct: 901 GLPLVVHRRCDKPMYALANLIAYDGAMVYGTIAPHADKETLASLPTGWIHVSGASEGNWV 960 Query: 485 PEEGNALHRLLQVLHEDGVANKDISVITPFRAVRDELPRYVFDEMVSGTIHTMQGKESDV 544 P EG L LL+ LH DGV KDISVITPF+AV+ L R + ++VSGTIHTMQGKE+ + Sbjct: 961 PAEGQVLRDLLKRLHGDGVEAKDISVITPFKAVQQNLKRMLRGKLVSGTIHTMQGKEASI 1020 Query: 545 VILVLGGSSHGGDARGWAVAEPNLINVAVTRAKRRLYVIGDRDSWCRHPLFAEVMDWLPV 604 VI+VLGG++ G AR WAV+EPNL+NVA TRAKRRLYVIGDR+ W LF +VMD LP+ Sbjct: 1021 VIVVLGGNTAGAGARDWAVSEPNLLNVAATRAKRRLYVIGDRNDWKHRQLFCDVMDLLPL 1080 Query: 605 Q 605 Q Sbjct: 1081 Q 1081 >gb|ADP96964.1| conserved hypothetical protein [Marinobacter adhaerens HP15] Length = 1091 Score = 603 bits (1556), Expect = e-170, Method: Compositional matrix adjust. Identities = 297/604 (49%), Positives = 404/604 (66%), Gaps = 1/604 (0%) Query: 10 DASHTDEKPRRQRRGFEAWIEARAEENARRDTSQRQALWKAAVKEYQDAKTAVDQIQAYV 69 D + T ++ G W+ A A+ N R ++RQALWK AV++++ AK V + A Sbjct: 483 DHADTPRDKEKEAEGLLEWLNANAKINKTRSPAERQALWKEAVQDFETAKEDVRKTYAAA 542 Query: 70 NPMRKLLSELQVARETVATTELALIALRKNAKEVDDELSDFDARQRDPAATAMEEILVEL 129 + +R+L+ L RE + L L + ++L+D D ++ PA+ +++ L L Sbjct: 543 SRIRELIQHLCQTREKIREKSKTLTDLESKLGDTLNDLADLDTKESRPASIKLKKYLDAL 602 Query: 130 ENYLGSRPGFWANLFSLGKKKKLWTERRTFLDRKLTAAEKKLEHVDRVFSQLITRQKNLS 189 + RP FW LFSL + ++ W L + A+ + + R +L +K+L Sbjct: 603 GKHQARRPSFWVKLFSLWRAQRDWETTGKLLKSQHDLAKSEFNRIARQTMRLDVSRKSLE 662 Query: 190 DQILTTEQQLADQKKYSAEKQTDSVSLAVKFEAKHLILRLREEQPDPQNPIEMLEPWKID 249 Q+ ++ L K ++ D++ LA + A HL+ L+E PIE+ EPW+I+ Sbjct: 663 TQVGDLQRSLQRLKDQGQAQEQDAIDLANTYRANHLLAWLKEGSIGRGEPIELAEPWQIE 722 Query: 250 GWREARARVFIKALKLHRTFFSLEASRMRSNLKFINRILTGGRFESVSDASLRSVWASLF 309 GWR++RARVFI+ALKLHR FF LEA R+RSNL IN ILTG R+ +S ++RS W +LF Sbjct: 723 GWRQSRARVFIQALKLHRVFFELEAYRIRSNLFLINGILTGSRYRGLSREAIRSAWTTLF 782 Query: 310 MLVPVLSSTFASFARTFGSLGKGDIGWLLVDEAGQAPPQAAVGALWRAKRAVLVGDTFQL 369 M+VPVLSSTFASF+R+FGSLG +IGWL VDEAGQAPPQAAVGALWR +RA++VGD QL Sbjct: 783 MVVPVLSSTFASFSRSFGSLGASEIGWLFVDEAGQAPPQAAVGALWRTQRALMVGDPLQL 842 Query: 370 KPIINVSNAALEHMRKRYGVDPYWIPKTLSAQILADAATRWGRLVGPTAHERRWAGLPLV 429 KPI+ VS+A LEHMR RY ++ +W+P SAQ LAD AT GR+ GP A ++ W G+PLV Sbjct: 843 KPIVTVSDAVLEHMRTRYQINAHWLPNRQSAQTLADGATPLGRMAGP-ADDKTWVGMPLV 901 Query: 430 VHRRCDRPMYDIANRIAYGGAMVYGTKDPSPERETPASIVTGWIDVKGPSNGNWVPEEGN 489 VHRRCD+PM+++ANR+AY GAMV+GT P P++ETPAS+ TGWI G S GNWVP EG Sbjct: 902 VHRRCDKPMHELANRVAYDGAMVFGTIPPKPDKETPASLPTGWIQAIGTSEGNWVPAEGQ 961 Query: 490 ALHRLLQVLHEDGVANKDISVITPFRAVRDELPRYVFDEMVSGTIHTMQGKESDVVILVL 549 AL RLL++L DGV KDISVITPF+AVR+ L R + D++VSGTIHTMQGKE+ ++I+VL Sbjct: 962 ALQRLLKLLEGDGVEAKDISVITPFKAVRENLNRILPDKVVSGTIHTMQGKEAAIIIMVL 1021 Query: 550 GGSSHGGDARGWAVAEPNLINVAVTRAKRRLYVIGDRDSWCRHPLFAEVMDWLPVQALPI 609 GG++ AR W V+EPNL+NVA TRAKRR YVIGDR W LF +VMD LP+ ++ Sbjct: 1022 GGNTENSGARNWVVSEPNLLNVAATRAKRRFYVIGDRGDWQNRALFCDVMDLLPLHSISA 1081 Query: 610 PKKK 613 ++K Sbjct: 1082 NEQK 1085 >ref|YP_004474243.1| DNA helicase related protein [Pseudomonas fulva 12-X] gb|AEF22149.1| DNA helicase related protein [Pseudomonas fulva 12-X] Length = 1088 Score = 570 bits (1469), Expect = e-160, Method: Compositional matrix adjust. Identities = 301/604 (49%), Positives = 403/604 (66%), Gaps = 10/604 (1%) Query: 10 DASHTDEKPRRQRR--GFEAWIEARAEENARRDTSQRQALWKAAVKEYQDAKTAVDQIQA 67 D+ + +P +R GF+AW++ + + D QRQ W +AV++Y+ A D++ A Sbjct: 472 DSGGAETQPEVTKRPQGFKAWLDEQIGLSGIAD--QRQRSWTSAVEDYKAAIRIADELSA 529 Query: 68 YVNPMRKLLSELQVARETVATTELALIALRKNAKEVDDELSDFDARQRDPAATAMEEILV 127 + +++ ++ A V+ E AL + V+ EL+D R A +++ Sbjct: 530 GAAKISQIIQAIRKATHEVSQKEEALKQQVQKHAAVEAELADLQQRSLPVARNNLDQSSQ 589 Query: 128 ELENYLGSRPGFWANLFSLGKKKKLWTERRTFLDRKLTAAEKKLEHVDRVFSQLITRQKN 187 L+N+ S+P FWANL SLG + W L + AE + ++ + ++L R + Sbjct: 590 ALQNHRNSKPSFWANLLSLGGAYRQWLALLAPLQHQSALAEAAYKPLETMAARL--RAEK 647 Query: 188 LSDQILTT--EQQLADQKKYSAEKQTDSVSLAVKFEAKHLILRLREEQPDPQNPIEMLEP 245 ++ + L+ ++L ++++ + + SLA+ +A HL+ L IE+ EP Sbjct: 648 MAQEKLSKNRHEELKHLREHAKLQFDKAKSLAIACQATHLLTWLETGVIGRGAQIELAEP 707 Query: 246 WKIDGWREARARVFIKALKLHRTFFSLEASRMRSNLKFINRILTGGRFESVSDASLRSVW 305 W I WR+ARA+VF+KAL+LHRTFF +EA R+++NL+FI +L GGR+ +S ++RSVW Sbjct: 708 WIIKDWRQARAKVFLKALQLHRTFFQIEAKRIQANLRFITDMLGGGRYSGISRDAIRSVW 767 Query: 306 ASLFMLVPVLSSTFASFARTFGSLGKGDIGWLLVDEAGQAPPQAAVGALWRAKRAVLVGD 365 ASLFM+VPVLSSTFASFAR+FGSL G+IGWLLVDEAGQA PQAAVGALWRA+RAVLVGD Sbjct: 768 ASLFMVVPVLSSTFASFARSFGSLEAGEIGWLLVDEAGQATPQAAVGALWRARRAVLVGD 827 Query: 366 TFQLKPIINVSNAALEHMRKRYGVDPYWIPKTLSAQILADAATRWGRLVGPTAHERRWAG 425 QL PII+VS+A LEHMRKR+GV +W+P SAQ LAD AT WG L+GP + + W G Sbjct: 828 PLQLPPIISVSDATLEHMRKRFGVSTHWLPNRQSAQTLADQATPWGDLIGPQ-NSKSWVG 886 Query: 426 LPLVVHRRCDRPMYDIANRIAYGGAMVYGTKDPSPERETPASIVTGWIDVKGPSNGNWVP 485 LPLVVHRRCDRPM+D+ANRIAY GAMVYGTK PSPE+ET A ++TGWI G S GNWV Sbjct: 887 LPLVVHRRCDRPMFDLANRIAYDGAMVYGTKAPSPEKETKAKLLTGWIHAAGMSTGNWVE 946 Query: 486 EEGNALHRLLQVLHEDGVANKDISVITPFRAVRDELPRYVFDEMVSGTIHTMQGKESDVV 545 EGNAL +LL L DGV + DISVITPF+ VR L + ++M GTIHTMQGKE+ VV Sbjct: 947 AEGNALQQLLDGLKADGVPDSDISVITPFQDVRRRLKTMLPEKMTRGTIHTMQGKEAPVV 1006 Query: 546 ILVLGGSSHGGDARGWAVAEPNLINVAVTRAKRRLYVIGDRDSWCRHPLFAEVMDWLPVQ 605 I+VLGG+S AR W V+ PNL+NVAVTRAKRR YVIGD + W + LF EVMD LP+Q Sbjct: 1007 IMVLGGNSSSPGARNWVVSTPNLLNVAVTRAKRRFYVIGDINDWPQRALFCEVMDLLPIQ 1066 Query: 606 ALPI 609 LP+ Sbjct: 1067 -LPV 1069 >ref|ZP_06688291.1| conserved hypothetical protein [Achromobacter piechaudii ATCC 43553] gb|EFF74819.1| conserved hypothetical protein [Achromobacter piechaudii ATCC 43553] Length = 1081 Score = 566 bits (1458), Expect = e-159, Method: Compositional matrix adjust. Identities = 310/604 (51%), Positives = 389/604 (64%), Gaps = 12/604 (1%) Query: 9 DDASHTDEKPRRQRRGFEAWIEARAEENARRDTSQRQALWKAAVKEYQDAKTAVDQIQAY 68 D A+ TD++ +GF W+ A + R T QR+ W AV Y+ AK V ++ A Sbjct: 480 DGAAATDQQ---APQGFLNWLGTHA--DVVRTTEQRRETWARAVAAYRAAKRKVAELSAA 534 Query: 69 VNPMRKLLSELQVARETVATTELALIALRKNAKEVDDELSDFDARQRDPAATAMEEILVE 128 ++ + EL R L V +L+ DA + A A+ L Sbjct: 535 SAGIQDRVKELVDIRVAARAKSETLANAEARLATVTAQLASLDAGELKSAQRALSISLEA 594 Query: 129 LENYLGSRPGFWANLFSLGKKKKLWTERRTFLDRKLTAAEKKLEHVDRVFSQLITRQKNL 188 L + +RPGFW NL SL ++ W + + + + E + R +L K L Sbjct: 595 LRRHTEARPGFWENLVSLWAAQRRWKSGGDLIASRHALSHAEFERLRRTAERLDAECKAL 654 Query: 189 SDQ---ILTTEQQLADQKKYSAEKQTDSVSLAVKFEAKHLILRLREEQPDPQNPIEMLEP 245 + IL QQL + ++ + S+A +AKHL+ L + IE+ EP Sbjct: 655 DQERAAILRAVQQL---RVRMQAQEAEIRSVARAGDAKHLLEWLETGVVGRGDAIELAEP 711 Query: 246 WKIDGWREARARVFIKALKLHRTFFSLEASRMRSNLKFINRILTGGRFESVSDASLRSVW 305 W IDG R+ARA VFI+ALKLHR FF LEA RMRSNL FIN ILTG R+++VS ++RS W Sbjct: 712 WMIDGLRKARAAVFIEALKLHRCFFELEAKRMRSNLFFINSILTGSRYQNVSHHTIRSAW 771 Query: 306 ASLFMLVPVLSSTFASFARTFGSLGKGDIGWLLVDEAGQAPPQAAVGALWRAKRAVLVGD 365 ASLFM+VPVLSSTFASF+R+FGS G G+IGWL VDEAGQAPPQAAVGALWRA+RAVLVGD Sbjct: 772 ASLFMVVPVLSSTFASFSRSFGSFGVGEIGWLFVDEAGQAPPQAAVGALWRARRAVLVGD 831 Query: 366 TFQLKPIINVSNAALEHMRKRYGVDPYWIPKTLSAQILADAATRWGRLVGPTAHERRWAG 425 QLKPII VS+A LEHMR RY VD YW P SAQ+LAD ATRWGR++GP+ +++W G Sbjct: 832 PLQLKPIITVSDAVLEHMRTRYQVDDYWTPTRQSAQVLADQATRWGRMIGPS-DDKKWVG 890 Query: 426 LPLVVHRRCDRPMYDIANRIAYGGAMVYGTKDPSPERETPASIVTGWIDVKGPSNGNWVP 485 LPLVVHRRCD+PMY +ANRIAYGG MVYGT PSP +ET AS+ TGW+ GPS+GNWVP Sbjct: 891 LPLVVHRRCDKPMYTLANRIAYGGVMVYGTLAPSPAKETTASLATGWLHAAGPSSGNWVP 950 Query: 486 EEGNALHRLLQVLHEDGVANKDISVITPFRAVRDELPRYVFDEMVSGTIHTMQGKESDVV 545 EG L +LL +L DGV DI+V+TPF+AVR L ++ MV GTIHTMQGKE+ VV Sbjct: 951 AEGVTLRQLLTLLEADGVPATDIAVVTPFQAVRQRLGDFLPSGMVRGTIHTMQGKEAPVV 1010 Query: 546 ILVLGGSSHGGDARGWAVAEPNLINVAVTRAKRRLYVIGDRDSWCRHPLFAEVMDWLPVQ 605 ++VLGG+S AR WAV+EPNL+NVA TRAKRR YVIGD W LF +VMD LP+Q Sbjct: 1011 VMVLGGNSSSPGARNWAVSEPNLLNVAATRAKRRFYVIGDIHDWQDRNLFCDVMDLLPLQ 1070 Query: 606 ALPI 609 ALP+ Sbjct: 1071 ALPV 1074 >emb|CAQ18488.1| putative dna helicase related protein (partial sequence n terminus) [Ralstonia solanacearum MolK2] Length = 460 Score = 541 bits (1394), Expect = e-151, Method: Compositional matrix adjust. Identities = 268/437 (61%), Positives = 321/437 (73%), Gaps = 1/437 (0%) Query: 167 AEKKLEHVDRVFSQLITRQKNLSDQILTTEQQLADQKKYSAEKQTDSVSLAVKFEAKHLI 226 A E V R +++ ++ QI T L ++ T ++ LA EA HL+ Sbjct: 9 AHAGFERVKREIDRVVAERQLQEKQIAATANTLQQTREREQRMHTQAIRLAQTCEALHLV 68 Query: 227 LRLREEQPDPQNPIEMLEPWKIDGWREARARVFIKALKLHRTFFSLEASRMRSNLKFINR 286 L+ + IE+ EPW +DGWR+ARARVFI+ALKLHRTFFSLEA R+RSNL FIN Sbjct: 69 EWLQTGEIGRGADIELAEPWIMDGWRQARARVFIEALKLHRTFFSLEAKRLRSNLFFINS 128 Query: 287 ILTGGRFESVSDASLRSVWASLFMLVPVLSSTFASFARTFGSLGKGDIGWLLVDEAGQAP 346 ILTGGRF VS ++RS WASLFM+VPVLSSTFASFAR+FGSLG +IGWLLVDEAGQA Sbjct: 129 ILTGGRFAGVSREAIRSAWASLFMVVPVLSSTFASFARSFGSLGAAEIGWLLVDEAGQAA 188 Query: 347 PQAAVGALWRAKRAVLVGDTFQLKPIINVSNAALEHMRKRYGVDPYWIPKTLSAQILADA 406 PQAAVGALWR+ RAVLVGD QLKPI++VS+A LEHMR RYGVDP+W+P SAQ LAD Sbjct: 189 PQAAVGALWRSSRAVLVGDPLQLKPIVSVSDAVLEHMRTRYGVDPHWLPNRQSAQTLADE 248 Query: 407 ATRWGRLVGPTAHERRWAGLPLVVHRRCDRPMYDIANRIAYGGAMVYGTKDPSPERETPA 466 AT WG+++GP E +W GLPLVVHRRCDRPMY++ANRIAY GAMVYGT P ++ET A Sbjct: 249 ATSWGKMLGPAGRE-KWVGLPLVVHRRCDRPMYELANRIAYDGAMVYGTVAPRHDKETKA 307 Query: 467 SIVTGWIDVKGPSNGNWVPEEGNALHRLLQVLHEDGVANKDISVITPFRAVRDELPRYVF 526 S+ +GW+ GPS GNWVP EG+ L +LL L DGV + +ISVITPF+AVR L Y+ Sbjct: 308 SLPSGWLHTGGPSMGNWVPAEGDVLRQLLAALRADGVDDDEISVITPFKAVRQRLGGYLP 367 Query: 527 DEMVSGTIHTMQGKESDVVILVLGGSSHGGDARGWAVAEPNLINVAVTRAKRRLYVIGDR 586 +MV GTIHTMQGKES VV+LVLGG+++ AR WAV+EPNL+NVA TRAKRR YVIGD Sbjct: 368 AKMVHGTIHTMQGKESAVVVLVLGGNTNSDGARNWAVSEPNLLNVAATRAKRRFYVIGDM 427 Query: 587 DSWCRHPLFAEVMDWLP 603 D W LF +VMD LP Sbjct: 428 DDWKGRRLFCDVMDLLP 444