BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0028.0011.p (208 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777063.1| acyl-CoA transferases/carnitine dehydratase ... 429 e-118 ref|YP_001099355.1| putative Formyl-CoA transferase [Herminiimon... 354 5e-96 ref|ZP_08274879.1| CAIB/BAIF family protein [Oxalobacteraceae ba... 349 1e-94 ref|ZP_06689365.1| CAIB/BAIF family protein [Achromobacter piech... 323 1e-86 ref|YP_003981021.1| CoA-transferase [Achromobacter xylosoxidans ... 323 1e-86 ref|NP_883539.1| hypothetical protein BPP1224 [Bordetella parape... 322 2e-86 gb|EGP47966.1| CoA-transferase family III family protein 42 [Ach... 321 4e-86 ref|NP_887987.1| hypothetical protein BB1441 [Bordetella bronchi... 321 5e-86 gb|EFV86277.1| hypothetical protein HMPREF0005_02660 [Achromobac... 319 1e-85 ref|YP_001632161.1| facyl-CoA transferase/carnitine dehydratase ... 308 3e-82 >ref|YP_003777063.1| acyl-CoA transferases/carnitine dehydratase [Herbaspirillum seropedicae SmR1] gb|ADJ65155.1| acyl-CoA transferases/carnitine dehydratase protein [Herbaspirillum seropedicae SmR1] Length = 415 Score = 429 bits (1102), Expect = e-118, Method: Compositional matrix adjust. Identities = 208/208 (100%), Positives = 208/208 (100%) Query: 1 VAGQGQMVDVALYEAVFNMMESMVPEFDFAGVVRERTGGALPGIVPSNTYTTGEGMNIVI 60 VAGQGQMVDVALYEAVFNMMESMVPEFDFAGVVRERTGGALPGIVPSNTYTTGEGMNIVI Sbjct: 208 VAGQGQMVDVALYEAVFNMMESMVPEFDFAGVVRERTGGALPGIVPSNTYTTGEGMNIVI 267 Query: 61 AGNGDAIFKRLMSAIGREDMANDPGLARNDGRVPRTEEIDAAIQQWCSTQTIETALATLQ 120 AGNGDAIFKRLMSAIGREDMANDPGLARNDGRVPRTEEIDAAIQQWCSTQTIETALATLQ Sbjct: 268 AGNGDAIFKRLMSAIGREDMANDPGLARNDGRVPRTEEIDAAIQQWCSTQTIETALATLQ 327 Query: 121 AADVPVGKIYSVKDMMNDAQFLARDMFEQHQFADGTPVKLPGITPKMSETPGQTKWLGPE 180 AADVPVGKIYSVKDMMNDAQFLARDMFEQHQFADGTPVKLPGITPKMSETPGQTKWLGPE Sbjct: 328 AADVPVGKIYSVKDMMNDAQFLARDMFEQHQFADGTPVKLPGITPKMSETPGQTKWLGPE 387 Query: 181 LGAHSDEILQSLGYDEAHIKMLRDQGVV 208 LGAHSDEILQSLGYDEAHIKMLRDQGVV Sbjct: 388 LGAHSDEILQSLGYDEAHIKMLRDQGVV 415 >ref|YP_001099355.1| putative Formyl-CoA transferase [Herminiimonas arsenicoxydans] emb|CAL61228.1| putative CoA-transferase family III [Herminiimonas arsenicoxydans] Length = 414 Score = 354 bits (908), Expect = 5e-96, Method: Compositional matrix adjust. Identities = 166/208 (79%), Positives = 188/208 (90%) Query: 1 VAGQGQMVDVALYEAVFNMMESMVPEFDFAGVVRERTGGALPGIVPSNTYTTGEGMNIVI 60 VAGQGQM+DVALYEAVFNMMES+VPE+D+AGVVRERTGGALPGIVPSNTYTTG+G NIVI Sbjct: 207 VAGQGQMIDVALYEAVFNMMESLVPEYDYAGVVRERTGGALPGIVPSNTYTTGDGENIVI 266 Query: 61 AGNGDAIFKRLMSAIGREDMANDPGLARNDGRVPRTEEIDAAIQQWCSTQTIETALATLQ 120 AGNGDAIFKRLM A+GR+D+AND LARNDGRVPRT EID AIQ WC+TQTI++A+A LQ Sbjct: 267 AGNGDAIFKRLMLAMGRDDLANDAQLARNDGRVPRTAEIDGAIQAWCATQTIDSAMAILQ 326 Query: 121 AADVPVGKIYSVKDMMNDAQFLARDMFEQHQFADGTPVKLPGITPKMSETPGQTKWLGPE 180 AADVP GKIYSV+DMMND QFLAR MFEQH FADGTP+KLP ITPK+SETPG+TKWLGP Sbjct: 327 AADVPAGKIYSVRDMMNDPQFLARKMFEQHTFADGTPIKLPAITPKLSETPGETKWLGPA 386 Query: 181 LGAHSDEILQSLGYDEAHIKMLRDQGVV 208 LG H+D++L++LGYD+A I LR GVV Sbjct: 387 LGEHTDDVLKTLGYDDAGIAELRRDGVV 414 >ref|ZP_08274879.1| CAIB/BAIF family protein [Oxalobacteraceae bacterium IMCC9480] gb|EGF31648.1| CAIB/BAIF family protein [Oxalobacteraceae bacterium IMCC9480] Length = 415 Score = 349 bits (896), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 167/208 (80%), Positives = 183/208 (87%) Query: 1 VAGQGQMVDVALYEAVFNMMESMVPEFDFAGVVRERTGGALPGIVPSNTYTTGEGMNIVI 60 VAGQGQMVDVALYE+VFN+MES+VPEFD AGVVRERTGGALPGIVPSNTYTTG+G NIVI Sbjct: 208 VAGQGQMVDVALYESVFNLMESLVPEFDHAGVVRERTGGALPGIVPSNTYTTGDGDNIVI 267 Query: 61 AGNGDAIFKRLMSAIGREDMANDPGLARNDGRVPRTEEIDAAIQQWCSTQTIETALATLQ 120 AGNGDAIFKRLM AIGR DMA+DP LARNDGRVPRT EID AIQ WCSTQTI+ ALATLQ Sbjct: 268 AGNGDAIFKRLMVAIGRSDMASDPQLARNDGRVPRTAEIDGAIQAWCSTQTIDVALATLQ 327 Query: 121 AADVPVGKIYSVKDMMNDAQFLARDMFEQHQFADGTPVKLPGITPKMSETPGQTKWLGPE 180 ADVPV KIYSV+DM++D QFLAR MFEQH FADGTPVKLP I+PK+S TPGQT+WLGP Sbjct: 328 GADVPVSKIYSVRDMLHDPQFLARQMFEQHAFADGTPVKLPAISPKLSATPGQTRWLGPA 387 Query: 181 LGAHSDEILQSLGYDEAHIKMLRDQGVV 208 LGAH+ E+L LG+D A I LRD GV+ Sbjct: 388 LGAHNAEVLGDLGFDAAAIAQLRDDGVI 415 >ref|ZP_06689365.1| CAIB/BAIF family protein [Achromobacter piechaudii ATCC 43553] gb|EFF73755.1| CAIB/BAIF family protein [Achromobacter piechaudii ATCC 43553] Length = 419 Score = 323 bits (827), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 152/207 (73%), Positives = 174/207 (84%) Query: 2 AGQGQMVDVALYEAVFNMMESMVPEFDFAGVVRERTGGALPGIVPSNTYTTGEGMNIVIA 61 AGQGQMVDVALYEAVFNMMES+VPE+D AGVVRERTGGALPGIVPSNTYTT +G NIVIA Sbjct: 208 AGQGQMVDVALYEAVFNMMESLVPEYDVAGVVRERTGGALPGIVPSNTYTTRDGQNIVIA 267 Query: 62 GNGDAIFKRLMSAIGREDMANDPGLARNDGRVPRTEEIDAAIQQWCSTQTIETALATLQA 121 GNGDAIF RLM AIGR+D+A DP L RNDGR R ++ID AIQQWC +TI+ AL TL+A Sbjct: 268 GNGDAIFHRLMRAIGRDDLAEDPELVRNDGRARRVQDIDGAIQQWCDGRTIDQALDTLKA 327 Query: 122 ADVPVGKIYSVKDMMNDAQFLARDMFEQHQFADGTPVKLPGITPKMSETPGQTKWLGPEL 181 ADVPVGKIYSV DM ND QFLAR M EQHQ ADG+PVKLP + PK+SETPGQT+W+GP+L Sbjct: 328 ADVPVGKIYSVADMFNDPQFLARRMIEQHQLADGSPVKLPAVVPKLSETPGQTRWVGPKL 387 Query: 182 GAHSDEILQSLGYDEAHIKMLRDQGVV 208 G H++E+L++LGYD A I L G + Sbjct: 388 GEHTEEVLKTLGYDSAAIDELAKTGAI 414 >ref|YP_003981021.1| CoA-transferase [Achromobacter xylosoxidans A8] gb|ADP18306.1| CoA-transferase family III family protein 42 [Achromobacter xylosoxidans A8] Length = 419 Score = 323 bits (827), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 152/207 (73%), Positives = 171/207 (82%) Query: 2 AGQGQMVDVALYEAVFNMMESMVPEFDFAGVVRERTGGALPGIVPSNTYTTGEGMNIVIA 61 AGQGQMVDVALYEAVFNMMES+VPE+D AGVVRERTGGALPGIVPSNTYTT +G NIVIA Sbjct: 208 AGQGQMVDVALYEAVFNMMESLVPEYDVAGVVRERTGGALPGIVPSNTYTTRDGQNIVIA 267 Query: 62 GNGDAIFKRLMSAIGREDMANDPGLARNDGRVPRTEEIDAAIQQWCSTQTIETALATLQA 121 GNGDAIF RLM AIGR+D+A DPGL RNDGR R EEID AIQQWC + IE AL L+ Sbjct: 268 GNGDAIFHRLMRAIGRDDLATDPGLVRNDGRAKRVEEIDGAIQQWCGARGIEEALGVLKG 327 Query: 122 ADVPVGKIYSVKDMMNDAQFLARDMFEQHQFADGTPVKLPGITPKMSETPGQTKWLGPEL 181 ADVPVGKIYSV DM D QFLAR M EQH+F DGTPVKLP + PK+SETPG+T+W+GP L Sbjct: 328 ADVPVGKIYSVADMFGDPQFLARRMIEQHRFPDGTPVKLPAVVPKLSETPGETRWVGPVL 387 Query: 182 GAHSDEILQSLGYDEAHIKMLRDQGVV 208 G H++E+L+SLGYD A I+ L G + Sbjct: 388 GEHTEEVLKSLGYDSAAIEELAKTGAI 414 >ref|NP_883539.1| hypothetical protein BPP1224 [Bordetella parapertussis 12822] emb|CAE36526.1| conserved hypothetical protein [Bordetella parapertussis] Length = 416 Score = 322 bits (824), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 153/207 (73%), Positives = 171/207 (82%) Query: 2 AGQGQMVDVALYEAVFNMMESMVPEFDFAGVVRERTGGALPGIVPSNTYTTGEGMNIVIA 61 AGQGQMVDVALYE+VFNMMES+VPE+D AGVVRERTGGALPGIVPSNTYTT +G NIVIA Sbjct: 208 AGQGQMVDVALYESVFNMMESLVPEYDVAGVVRERTGGALPGIVPSNTYTTRDGQNIVIA 267 Query: 62 GNGDAIFKRLMSAIGREDMANDPGLARNDGRVPRTEEIDAAIQQWCSTQTIETALATLQA 121 GNGDAIF RLM AIGR D+A+DP L RNDGR R EID+AIQ+WC T TIE ALATL+A Sbjct: 268 GNGDAIFHRLMLAIGRSDLAHDPQLERNDGRARRATEIDSAIQRWCDTHTIEQALATLRA 327 Query: 122 ADVPVGKIYSVKDMMNDAQFLARDMFEQHQFADGTPVKLPGITPKMSETPGQTKWLGPEL 181 ADVPVGKIYSV DM D QFLAR M EQH F DG+PVKLP + PK+SETPG T+WLGP L Sbjct: 328 ADVPVGKIYSVADMFTDPQFLARGMIEQHHFPDGSPVKLPAVVPKLSETPGGTRWLGPRL 387 Query: 182 GAHSDEILQSLGYDEAHIKMLRDQGVV 208 G H++E+L+SLGYD A I L G + Sbjct: 388 GEHTEEVLRSLGYDAAAIAELAQTGAI 414 >gb|EGP47966.1| CoA-transferase family III family protein 42 [Achromobacter xylosoxidans AXX-A] Length = 429 Score = 321 bits (823), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 153/207 (73%), Positives = 171/207 (82%) Query: 2 AGQGQMVDVALYEAVFNMMESMVPEFDFAGVVRERTGGALPGIVPSNTYTTGEGMNIVIA 61 AGQGQMVDVALYEAVFNMMES+VPE+D AGVVRERTGGALPGIVPSNTYTT +G NIVIA Sbjct: 208 AGQGQMVDVALYEAVFNMMESLVPEYDVAGVVRERTGGALPGIVPSNTYTTRDGQNIVIA 267 Query: 62 GNGDAIFKRLMSAIGREDMANDPGLARNDGRVPRTEEIDAAIQQWCSTQTIETALATLQA 121 GNGDAIF RLM AIGR+D+A+DP L RNDGR R EID AIQQWC + IE AL TL+A Sbjct: 268 GNGDAIFHRLMLAIGRDDLASDPDLVRNDGRARRVAEIDGAIQQWCDGRGIEEALNTLKA 327 Query: 122 ADVPVGKIYSVKDMMNDAQFLARDMFEQHQFADGTPVKLPGITPKMSETPGQTKWLGPEL 181 ADVPVGKIYSV DM D QFLAR M EQHQFADG+PVKLP + PK+SETPG T+W+GP L Sbjct: 328 ADVPVGKIYSVADMFTDPQFLARRMIEQHQFADGSPVKLPAVVPKLSETPGGTRWIGPSL 387 Query: 182 GAHSDEILQSLGYDEAHIKMLRDQGVV 208 G H++E+L+SLGYD A I L G + Sbjct: 388 GEHTEEVLKSLGYDSAAIDKLAQTGAI 414 >ref|NP_887987.1| hypothetical protein BB1441 [Bordetella bronchiseptica RB50] emb|CAE31939.1| conserved hypothetical protein [Bordetella bronchiseptica RB50] Length = 416 Score = 321 bits (822), Expect = 5e-86, Method: Compositional matrix adjust. Identities = 152/207 (73%), Positives = 171/207 (82%) Query: 2 AGQGQMVDVALYEAVFNMMESMVPEFDFAGVVRERTGGALPGIVPSNTYTTGEGMNIVIA 61 AGQGQMVDVALYE+VFNMMES+VPE+D AGVVRERTGGALPGIVPSNTYTT +G NIVIA Sbjct: 208 AGQGQMVDVALYESVFNMMESLVPEYDVAGVVRERTGGALPGIVPSNTYTTRDGQNIVIA 267 Query: 62 GNGDAIFKRLMSAIGREDMANDPGLARNDGRVPRTEEIDAAIQQWCSTQTIETALATLQA 121 GNGDAIF RLM AIGR D+A+DP L RNDGR R EID+AIQ+WC T TIE ALATL+A Sbjct: 268 GNGDAIFHRLMLAIGRSDLAHDPQLERNDGRARRATEIDSAIQRWCDTHTIEQALATLRA 327 Query: 122 ADVPVGKIYSVKDMMNDAQFLARDMFEQHQFADGTPVKLPGITPKMSETPGQTKWLGPEL 181 ADVPVGKIYSV DM D QFLAR M EQH F DG+PVKLP + PK+SETPG T+WLGP L Sbjct: 328 ADVPVGKIYSVADMFTDPQFLARGMIEQHHFPDGSPVKLPAVVPKLSETPGGTRWLGPRL 387 Query: 182 GAHSDEILQSLGYDEAHIKMLRDQGVV 208 G H++E+L++LGYD A I L G + Sbjct: 388 GEHTEEVLKALGYDAAAIAELAQTGAI 414 >gb|EFV86277.1| hypothetical protein HMPREF0005_02660 [Achromobacter xylosoxidans C54] Length = 429 Score = 319 bits (818), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 152/207 (73%), Positives = 170/207 (82%) Query: 2 AGQGQMVDVALYEAVFNMMESMVPEFDFAGVVRERTGGALPGIVPSNTYTTGEGMNIVIA 61 AGQGQMVDVALYEAVFNMMES+VPE+D AGVVRERTGGALPGIVPSNTYTT +G NIVIA Sbjct: 208 AGQGQMVDVALYEAVFNMMESLVPEYDVAGVVRERTGGALPGIVPSNTYTTRDGQNIVIA 267 Query: 62 GNGDAIFKRLMSAIGREDMANDPGLARNDGRVPRTEEIDAAIQQWCSTQTIETALATLQA 121 GNGDAIF RLM AIGR+D+A+DP L RNDGR R EID AIQQWC + IE AL TL+A Sbjct: 268 GNGDAIFHRLMLAIGRDDLASDPDLVRNDGRARRVAEIDGAIQQWCDGRGIEEALNTLKA 327 Query: 122 ADVPVGKIYSVKDMMNDAQFLARDMFEQHQFADGTPVKLPGITPKMSETPGQTKWLGPEL 181 ADVPVGKIYSV DM D QFLAR M EQH FADG+PVKLP + PK+SETPG T+W+GP L Sbjct: 328 ADVPVGKIYSVADMFTDPQFLARRMIEQHHFADGSPVKLPAVVPKLSETPGGTRWIGPSL 387 Query: 182 GAHSDEILQSLGYDEAHIKMLRDQGVV 208 G H++E+L+SLGYD A I L G + Sbjct: 388 GEHTEEVLKSLGYDSAAIDKLAQTGAI 414 >ref|YP_001632161.1| facyl-CoA transferase/carnitine dehydratase [Bordetella petrii DSM 12804] emb|CAP43893.1| Probable facyl-CoA transferase/carnitine dehydratase [Bordetella petrii] Length = 420 Score = 308 bits (789), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 141/195 (72%), Positives = 168/195 (86%) Query: 1 VAGQGQMVDVALYEAVFNMMESMVPEFDFAGVVRERTGGALPGIVPSNTYTTGEGMNIVI 60 VAGQGQMVDVALYE+VFN+MES+VPE+D AGVVRERTGGALPGIVPSNTYTT +G N+VI Sbjct: 207 VAGQGQMVDVALYESVFNLMESLVPEYDVAGVVRERTGGALPGIVPSNTYTTRDGQNVVI 266 Query: 61 AGNGDAIFKRLMSAIGREDMANDPGLARNDGRVPRTEEIDAAIQQWCSTQTIETALATLQ 120 AGNGDAIF RLM AIGR+D+A+DP LARNDGR R +EID AIQ+WC T++I+ AL L+ Sbjct: 267 AGNGDAIFNRLMRAIGRDDLADDPQLARNDGRARRADEIDGAIQRWCDTRSIDQALEALR 326 Query: 121 AADVPVGKIYSVKDMMNDAQFLARDMFEQHQFADGTPVKLPGITPKMSETPGQTKWLGPE 180 ADVPVGKIYSV DM D QF+AR M EQH+F DGTPVKLP + P++SETPG T+WLGP Sbjct: 327 RADVPVGKIYSVADMFADPQFIARGMIEQHRFPDGTPVKLPAVVPRLSETPGGTRWLGPR 386 Query: 181 LGAHSDEILQSLGYD 195 LG H++++L++LGYD Sbjct: 387 LGEHTEDVLKTLGYD 401