BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0028.0001.p (253 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_06688824.1| conserved hypothetical protein [Achromobacter... 239 3e-61 ref|YP_003980452.1| hypothetical protein AXYL_04418 [Achromobact... 234 1e-59 ref|NP_884642.1| putative integral membrane protein [Bordetella ... 199 2e-49 ref|YP_787016.1| membrane protein [Bordetella avium 197N] >gi|11... 198 5e-49 gb|EGP47982.1| membrane protein 59 [Achromobacter xylosoxidans A... 197 1e-48 ref|NP_880697.1| putative integral membrane protein [Bordetella ... 196 3e-48 gb|EFV87723.1| hypothetical protein HMPREF0005_03244 [Achromobac... 195 6e-48 ref|ZP_08638473.1| membrane protein [Halomonas sp. TD01] >gi|338... 188 5e-46 ref|YP_001631953.1| putative integral membrane protein [Bordetel... 187 1e-45 ref|YP_002947552.1| protein of unknown function DUF81 [Variovora... 187 1e-45 >ref|ZP_06688824.1| conserved hypothetical protein [Achromobacter piechaudii ATCC 43553] gb|EFF74212.1| conserved hypothetical protein [Achromobacter piechaudii ATCC 43553] Length = 254 Score = 239 bits (609), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 130/242 (53%), Positives = 178/242 (73%), Gaps = 1/242 (0%) Query: 9 HLLFALCVALATFVQSLTGFAFGLVLLGLVAMLHLAPLAVAANVVTVMVLANAAV-IVRG 67 HLLF CVALAT+ Q++TGFAFGLVLLGL + LA +A AN+V+V+ L NAAV + R Sbjct: 6 HLLFLACVALATYAQTMTGFAFGLVLLGLSGVFQLASVAEVANIVSVLSLVNAAVTLARA 65 Query: 68 APGLPRALILPSFGSSLIGVGLGAGLLAWLSDHAIGVLRLALGLAILACSLLLVLRTRVR 127 P + +L+ P+ +SLIGV +G L W+S +L+L LG+ ILAC++LLV R + Sbjct: 66 KPQVNWSLMRPAMFASLIGVAIGVAALTWISGSMSVLLQLLLGVTILACAVLLVARAKPL 125 Query: 128 ERLSSAPAFAFFGVLSGVMGGVFASAGPPMVFHLYRQPLDRVVVRDTLVLLFAVNAVLRL 187 E+LSS +F FFG +SGV+GG+F+SAGPPMV+HLYRQPL +R++L++LF++NAV+RL Sbjct: 126 EQLSSKASFLFFGGISGVLGGLFSSAGPPMVYHLYRQPLPLASIRNSLLVLFSLNAVVRL 185 Query: 188 VIVLAQGRFDTASLALSLEALPVVLGVTWLARRYPPQWSPLTVRRIVFLLLLVAGGSLVA 247 V+V QG F +S +S++ALPVV+GVTW+ARRY S TV+ +VF+LLL AG L+ Sbjct: 186 VLVTGQGEFMASSFWMSVQALPVVIGVTWVARRYSTAGSMKTVKCMVFVLLLAAGMGLIV 245 Query: 248 PA 249 PA Sbjct: 246 PA 247 >ref|YP_003980452.1| hypothetical protein AXYL_04418 [Achromobacter xylosoxidans A8] gb|ADP17737.1| putative membrane protein 59 [Achromobacter xylosoxidans A8] Length = 254 Score = 234 bits (596), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 130/244 (53%), Positives = 174/244 (71%), Gaps = 1/244 (0%) Query: 8 SHLLFALCVALATFVQSLTGFAFGLVLLGLVAMLHLAPLAVAANVVTVMVLANAAV-IVR 66 +LLF CVALAT+ Q++TGFAFGLVLLGL + LA ++ ANVV+V+ L NAAV + R Sbjct: 5 QYLLFLACVALATYAQTMTGFAFGLVLLGLSGVFQLASVSEVANVVSVLSLVNAAVTLAR 64 Query: 67 GAPGLPRALILPSFGSSLIGVGLGAGLLAWLSDHAIGVLRLALGLAILACSLLLVLRTRV 126 P + +L+ P+ SSL+GVG G LAW+S +L+L LG IL C++LLV R + Sbjct: 65 AKPQVNWSLMRPAMASSLVGVGAGVAALAWISGSMSVLLQLLLGCTILGCAVLLVARAQP 124 Query: 127 RERLSSAPAFAFFGVLSGVMGGVFASAGPPMVFHLYRQPLDRVVVRDTLVLLFAVNAVLR 186 +SS +F FFG +SGV+GG+F+SAGPPMV+HLYRQPL +R++L++LF++NAV+R Sbjct: 125 LASVSSRGSFVFFGAVSGVLGGLFSSAGPPMVYHLYRQPLPLAAIRNSLLILFSLNAVVR 184 Query: 187 LVIVLAQGRFDTASLALSLEALPVVLGVTWLARRYPPQWSPLTVRRIVFLLLLVAGGSLV 246 L +V QG F +S LSL ALPVV+GVTW+ARRY S TV+R+VF+LLL AG L+ Sbjct: 185 LALVTGQGAFMASSFWLSLLALPVVIGVTWVARRYSTAGSMQTVKRMVFVLLLAAGMGLI 244 Query: 247 APAL 250 PA Sbjct: 245 VPAF 248 >ref|NP_884642.1| putative integral membrane protein [Bordetella parapertussis 12822] ref|NP_888401.1| integral membrane protein [Bordetella bronchiseptica RB50] emb|CAE37703.1| putative integral membrane protein [Bordetella parapertussis] emb|CAE32353.1| putative integral membrane protein [Bordetella bronchiseptica RB50] Length = 256 Score = 199 bits (507), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 120/229 (52%), Positives = 160/229 (69%), Gaps = 1/229 (0%) Query: 8 SHLLFALCVALATFVQSLTGFAFGLVLLGLVAMLHLAPLAVAANVVTVMVLANAAVIV-R 66 H+LF CVALAT+ Q++TGFAFGLVLLGL +L +APL AN V+++ L NA V++ R Sbjct: 5 QHVLFLACVALATYAQTMTGFAFGLVLLGLTGLLAVAPLPDMANTVSILTLVNALVVIGR 64 Query: 67 GAPGLPRALILPSFGSSLIGVGLGAGLLAWLSDHAIGVLRLALGLAILACSLLLVLRTRV 126 P + L+ P+ SSL GV LG +L W+S A +L+ LGL ILAC++ LV R R Sbjct: 65 ARPQVDWTLVRPALVSSLAGVALGVFMLDWISGSAAVLLQWLLGLTILACAIQLVARARP 124 Query: 127 RERLSSAPAFAFFGVLSGVMGGVFASAGPPMVFHLYRQPLDRVVVRDTLVLLFAVNAVLR 186 R+SS +F FGV+SGV+GG+F+SAGPPMV+HLYRQPL +R++L++LF+ NA+ R Sbjct: 125 LARVSSRRSFVGFGVVSGVLGGLFSSAGPPMVYHLYRQPLPLATIRNSLLILFSCNAMTR 184 Query: 187 LVIVLAQGRFDTASLALSLEALPVVLGVTWLARRYPPQWSPLTVRRIVF 235 L +V AQG T + LSLEA PVV+ +TWL RRY S TV+R+VF Sbjct: 185 LALVGAQGSLHTITFWLSLEAFPVVVALTWLVRRYASARSIHTVKRLVF 233 >ref|YP_787016.1| membrane protein [Bordetella avium 197N] emb|CAJ50114.1| putative membrane protein [Bordetella avium 197N] Length = 256 Score = 198 bits (504), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 119/244 (48%), Positives = 170/244 (69%), Gaps = 1/244 (0%) Query: 6 SGSHLLFALCVALATFVQSLTGFAFGLVLLGLVAMLHLAPLAVAANVVTVMVLANAAVIV 65 + H++F L VALAT+ Q++TGFAFGLVLLGL ++ LAPL +N V+++ L NA V + Sbjct: 3 ASQHVIFLLAVALATYAQTMTGFAFGLVLLGLASLFALAPLPDMSNTVSILTLINALVAI 62 Query: 66 -RGAPGLPRALILPSFGSSLIGVGLGAGLLAWLSDHAIGVLRLALGLAILACSLLLVLRT 124 R P + +L+ P+ SSLIGV LG L ++ L+ LGL IL C+ +LVL+ Sbjct: 63 GRNRPQVDWSLLRPALCSSLIGVALGVAALGFIDSGTSIWLQWLLGLTILGCAFMLVLQA 122 Query: 125 RVRERLSSAPAFAFFGVLSGVMGGVFASAGPPMVFHLYRQPLDRVVVRDTLVLLFAVNAV 184 R +++S P F FFG++SG++GG+F+SAGPPMV+HLYRQPL V+R++L+++FAVN+V Sbjct: 123 RQLKQVSGKPVFVFFGLISGLLGGLFSSAGPPMVYHLYRQPLPLAVIRNSLLVIFAVNSV 182 Query: 185 LRLVIVLAQGRFDTASLALSLEALPVVLGVTWLARRYPPQWSPLTVRRIVFLLLLVAGGS 244 +RL +V AQG +L +SLEA PVV+ +TWL RR+ S TV+R+VF+LL+ AG Sbjct: 183 VRLGLVSAQGSLHLNTLWMSLEAFPVVVLLTWLVRRFASADSIKTVKRMVFVLLIAAGLG 242 Query: 245 LVAP 248 L P Sbjct: 243 LFLP 246 >gb|EGP47982.1| membrane protein 59 [Achromobacter xylosoxidans AXX-A] Length = 254 Score = 197 bits (500), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 133/243 (54%), Positives = 175/243 (72%), Gaps = 1/243 (0%) Query: 8 SHLLFALCVALATFVQSLTGFAFGLVLLGLVAMLHLAPLAVAANVVTVMVLANAAV-IVR 66 H+LF CVALAT+ Q++TGFAFGLVLLGL + LA ++ ANVV+V+ L NA V + R Sbjct: 5 QHVLFLACVALATYAQTMTGFAFGLVLLGLSGVFQLASVSEVANVVSVLSLVNAVVTLAR 64 Query: 67 GAPGLPRALILPSFGSSLIGVGLGAGLLAWLSDHAIGVLRLALGLAILACSLLLVLRTRV 126 P + L+ P+ SSL GV +G LAW+S +L+L LGL ILAC++LLV RT+ Sbjct: 65 AKPQVNWRLMTPALVSSLAGVAVGVVALAWISGAMAVLLQLLLGLTILACAVLLVARTQP 124 Query: 127 RERLSSAPAFAFFGVLSGVMGGVFASAGPPMVFHLYRQPLDRVVVRDTLVLLFAVNAVLR 186 ERLSS +F FG +SGV+GG+F+SAGPPMV+HLYRQPL +R++L++LF++NAV+R Sbjct: 125 LERLSSRASFVLFGGVSGVLGGLFSSAGPPMVYHLYRQPLPLASIRNSLLVLFSLNAVVR 184 Query: 187 LVIVLAQGRFDTASLALSLEALPVVLGVTWLARRYPPQWSPLTVRRIVFLLLLVAGGSLV 246 L +V QG F S LSL+ALPVV+GVTW+ARRY S TV+R+VF+LLL AG L+ Sbjct: 185 LALVTGQGTFMATSFWLSLQALPVVIGVTWVARRYATAGSMKTVKRMVFVLLLAAGLGLI 244 Query: 247 APA 249 PA Sbjct: 245 VPA 247 >ref|NP_880697.1| putative integral membrane protein [Bordetella pertussis Tohama I] emb|CAE42307.1| putative integral membrane protein [Bordetella pertussis Tohama I] gb|AEE67313.1| putative integral membrane protein [Bordetella pertussis CS] Length = 256 Score = 196 bits (497), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 125/243 (51%), Positives = 169/243 (69%), Gaps = 1/243 (0%) Query: 8 SHLLFALCVALATFVQSLTGFAFGLVLLGLVAMLHLAPLAVAANVVTVMVLANAAVIV-R 66 H+LF CVALAT+ Q++TGFAFGLVLLGL +L +APL AN V+++ L NA V++ R Sbjct: 5 QHVLFLACVALATYAQTMTGFAFGLVLLGLTGLLAVAPLPDMANTVSILTLVNALVVIDR 64 Query: 67 GAPGLPRALILPSFGSSLIGVGLGAGLLAWLSDHAIGVLRLALGLAILACSLLLVLRTRV 126 P + L+ P+ SSL GV LG +L W+S A +L+ LGL ILAC++ LV R R Sbjct: 65 ARPQVDWTLVRPALVSSLAGVALGVFMLDWISGSAAVLLQWLLGLTILACAIQLVARARP 124 Query: 127 RERLSSAPAFAFFGVLSGVMGGVFASAGPPMVFHLYRQPLDRVVVRDTLVLLFAVNAVLR 186 R+SS +F FGV+SGV+GG+F+SAGPPMV+HLYRQPL +R++L++LF+ NA+ R Sbjct: 125 LARVSSRRSFVGFGVVSGVLGGLFSSAGPPMVYHLYRQPLPLATIRNSLLILFSCNAMTR 184 Query: 187 LVIVLAQGRFDTASLALSLEALPVVLGVTWLARRYPPQWSPLTVRRIVFLLLLVAGGSLV 246 L +V AQ T + LSL+A PVV+ +TWL RRY S TV+R+VF+LL+ AG L+ Sbjct: 185 LALVGAQDSLHTITFWLSLKAFPVVVALTWLVRRYASARSIHTVKRLVFVLLVAAGLGLL 244 Query: 247 APA 249 PA Sbjct: 245 VPA 247 >gb|EFV87723.1| hypothetical protein HMPREF0005_03244 [Achromobacter xylosoxidans C54] Length = 254 Score = 195 bits (495), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 123/229 (53%), Positives = 163/229 (71%), Gaps = 1/229 (0%) Query: 8 SHLLFALCVALATFVQSLTGFAFGLVLLGLVAMLHLAPLAVAANVVTVMVLANAAV-IVR 66 H+LF CVALAT+ Q++TGFAFGLVLLGL + LA ++ ANVV+V+ L NA V + R Sbjct: 5 QHVLFLACVALATYAQTMTGFAFGLVLLGLSGVFQLASVSEVANVVSVLSLVNAVVTLAR 64 Query: 67 GAPGLPRALILPSFGSSLIGVGLGAGLLAWLSDHAIGVLRLALGLAILACSLLLVLRTRV 126 P + L+ P+ SSL GV +G LAW+S +L+L LGL I+AC++LLV R + Sbjct: 65 AKPQVNWPLMAPALLSSLAGVAVGVAALAWISGAMAVLLQLLLGLTIMACAVLLVARAQP 124 Query: 127 RERLSSAPAFAFFGVLSGVMGGVFASAGPPMVFHLYRQPLDRVVVRDTLVLLFAVNAVLR 186 RLSS +F FFG +SGV+GG+F+SAGPPMV+HLYRQPL +R++L++LF++NAV+R Sbjct: 125 LARLSSRASFLFFGGVSGVLGGLFSSAGPPMVYHLYRQPLPLASIRNSLLVLFSLNAVVR 184 Query: 187 LVIVLAQGRFDTASLALSLEALPVVLGVTWLARRYPPQWSPLTVRRIVF 235 L +V QG F S LSL+ALPVV+GVTW ARRY S TV+R+VF Sbjct: 185 LTLVAGQGAFMATSFWLSLQALPVVIGVTWAARRYATAGSMKTVKRMVF 233 >ref|ZP_08638473.1| membrane protein [Halomonas sp. TD01] gb|EGP18254.1| membrane protein [Halomonas sp. TD01] Length = 251 Score = 188 bits (478), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 110/236 (46%), Positives = 158/236 (66%), Gaps = 1/236 (0%) Query: 16 VALATFVQSLTGFAFGLVLLGLVAMLHLAPLAVAANVVTVMVLANAAV-IVRGAPGLPRA 74 VALAT+ Q++TGFAFGL+L+G V + LAP+A+ A +++++ L N A+ + R L R Sbjct: 13 VALATYAQTVTGFAFGLILMGGVVLSGLAPVAIVAILISILSLFNCALALYRNMGNLDRE 72 Query: 75 LILPSFGSSLIGVGLGAGLLAWLSDHAIGVLRLALGLAILACSLLLVLRTRVRERLSSAP 134 ++L S + G +L LS H + L+L LG+AIL SL+LV+ R+ +S Sbjct: 73 IVLLCSLSGFATLIFGVWVLDALSGHHVHWLQLILGVAILISSLMLVVHPLPRKTRASRA 132 Query: 135 AFAFFGVLSGVMGGVFASAGPPMVFHLYRQPLDRVVVRDTLVLLFAVNAVLRLVIVLAQG 194 +F FFG LSG MGG+F+++GPP+VFH YRQPL V+RD L+L+FA+N++ RLVIV QG Sbjct: 133 SFLFFGGLSGFMGGMFSTSGPPLVFHFYRQPLSLAVIRDCLLLIFAINSLQRLVIVGIQG 192 Query: 195 RFDTASLALSLEALPVVLGVTWLARRYPPQWSPLTVRRIVFLLLLVAGGSLVAPAL 250 R D + L L++ A+PVV+ TWL RRYPP + +RR+ FL+L +G SL AL Sbjct: 193 RLDASILLLAIVAIPVVVLFTWLGRRYPPPLTEANLRRVAFLMLFASGLSLCGSAL 248 >ref|YP_001631953.1| putative integral membrane protein [Bordetella petrii DSM 12804] emb|CAP43685.1| putative integral membrane protein [Bordetella petrii] Length = 253 Score = 187 bits (475), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 124/226 (54%), Positives = 157/226 (69%), Gaps = 1/226 (0%) Query: 8 SHLLFALCVALATFVQSLTGFAFGLVLLGLVAMLHLAPLAVAANVVTVMVLANAAVIV-R 66 HLLF CVALAT+ Q++TGFAFGLVLLGL + LAPL +NVV+++ LANA V + R Sbjct: 5 DHLLFLGCVALATYAQTMTGFAFGLVLLGLTGLFSLAPLPDVSNVVSMLTLANALVALGR 64 Query: 67 GAPGLPRALILPSFGSSLIGVGLGAGLLAWLSDHAIGVLRLALGLAILACSLLLVLRTRV 126 L +LI P SL GV LG L W+S + +LR LGL ILAC++LLV RTR Sbjct: 65 ARSHLSWSLIRPPLAGSLAGVALGVFALEWISGNTALLLRWLLGLTILACAILLVTRTRP 124 Query: 127 RERLSSAPAFAFFGVLSGVMGGVFASAGPPMVFHLYRQPLDRVVVRDTLVLLFAVNAVLR 186 R+SS +F FGVLSGV+GG+F+SAGPPMV+ +YRQPL +VR++L++LF+ NAVLR Sbjct: 125 LPRVSSRLSFISFGVLSGVLGGLFSSAGPPMVYQMYRQPLPLPLVRNSLLVLFSSNAVLR 184 Query: 187 LVIVLAQGRFDTASLALSLEALPVVLGVTWLARRYPPQWSPLTVRR 232 L +V G A L LSLEALPVV+G+TWL RRY + TV+R Sbjct: 185 LALVAGHGSLGAAPLWLSLEALPVVVGLTWLVRRYASAGAVRTVKR 230 >ref|YP_002947552.1| protein of unknown function DUF81 [Variovorax paradoxus S110] gb|ACS22286.1| protein of unknown function DUF81 [Variovorax paradoxus S110] Length = 259 Score = 187 bits (475), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 122/249 (48%), Positives = 166/249 (66%), Gaps = 1/249 (0%) Query: 2 VLDGSGSHLLFALCVALATFVQSLTGFAFGLVLLGLVAMLHLAPLAVAANVVTVMVLANA 61 +L +G L+F CVALAT+ Q+LTGFAF L+LLGLV++ H+A + AN TV+ L NA Sbjct: 4 ILSEAGPVLVFMACVALATYAQNLTGFAFSLILLGLVSVFHVASVGDTANAATVLSLINA 63 Query: 62 AVIVRGAPGL-PRALILPSFGSSLIGVGLGAGLLAWLSDHAIGVLRLALGLAILACSLLL 120 R PG+ P L+ P+ S +GV G LL WLS A+ LR LG++IL C+LLL Sbjct: 64 WTYFRARPGVVPWRLMKPALNGSTVGVIAGLMLLTWLSGGAVNWLRGLLGMSILGCALLL 123 Query: 121 VLRTRVRERLSSAPAFAFFGVLSGVMGGVFASAGPPMVFHLYRQPLDRVVVRDTLVLLFA 180 VL+ R + +S +FA G LSGV+GG+F+S+GPP+VFH+YRQPL+R +VR L+L+FA Sbjct: 124 VLQGRPQPAVSGRTSFAVIGGLSGVLGGLFSSSGPPIVFHMYRQPLERELVRRALLLMFA 183 Query: 181 VNAVLRLVIVLAQGRFDTASLALSLEALPVVLGVTWLARRYPPQWSPLTVRRIVFLLLLV 240 N+++RLVIVL G F + L+ A+PVV GVT L R P + P T++ +V LL Sbjct: 184 FNSLVRLVIVLPTGHFSWRAALLAACAMPVVYGVTRLHHRLPNKLQPRTLQWLVGGLLAA 243 Query: 241 AGGSLVAPA 249 AG +LVA A Sbjct: 244 AGSTLVASA 252