BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0330.p (125 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774622.1| hypothetical protein Hsero_1197 [Herbaspiril... 235 2e-60 ref|YP_004754074.1| hypothetical protein CFU_3427 [Collimonas fu... 100 6e-20 ref|YP_003979298.1| hypothetical protein AXYL_03263 [Achromobact... 99 2e-19 gb|EFV85657.1| hypothetical protein HMPREF0005_05040 [Achromobac... 93 1e-17 ref|YP_001796813.1| hypothetical protein RALTA_B0381 [Cupriavidu... 92 2e-17 ref|YP_728746.1| periplasmic protein [Ralstonia eutropha H16] >g... 92 3e-17 ref|YP_001354302.1| hypothetical protein mma_2612 [Janthinobacte... 90 1e-16 ref|YP_001020225.1| hypothetical protein Mpe_A1028 [Methylibium ... 90 1e-16 ref|YP_297706.1| hypothetical protein Reut_B3504 [Ralstonia eutr... 90 1e-16 ref|YP_001901259.1| hypothetical protein Rpic_3709 [Ralstonia pi... 87 1e-15 >ref|YP_003774622.1| hypothetical protein Hsero_1197 [Herbaspirillum seropedicae SmR1] gb|ADJ62714.1| Conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 125 Score = 235 bits (599), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 125/125 (100%), Positives = 125/125 (100%) Query: 1 MKKIIATMIFGVAAIGMQGAAFAADPAGAQYKADKKKADADYKTAKKKCGPMKGNDKDVC 60 MKKIIATMIFGVAAIGMQGAAFAADPAGAQYKADKKKADADYKTAKKKCGPMKGNDKDVC Sbjct: 1 MKKIIATMIFGVAAIGMQGAAFAADPAGAQYKADKKKADADYKTAKKKCGPMKGNDKDVC 60 Query: 61 EKEAKAAHESALADAKAKRKGAEADKDARKDKNDANYDVAKEKCDAMSGDAKDQCVANAK 120 EKEAKAAHESALADAKAKRKGAEADKDARKDKNDANYDVAKEKCDAMSGDAKDQCVANAK Sbjct: 61 EKEAKAAHESALADAKAKRKGAEADKDARKDKNDANYDVAKEKCDAMSGDAKDQCVANAK 120 Query: 121 SKYGK 125 SKYGK Sbjct: 121 SKYGK 125 >ref|YP_004754074.1| hypothetical protein CFU_3427 [Collimonas fungivorans Ter331] gb|AEK63251.1| hypothetical protein CFU_3427 [Collimonas fungivorans Ter331] Length = 194 Score = 100 bits (249), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 64/122 (52%), Positives = 78/122 (63%), Gaps = 1/122 (0%) Query: 1 MKKIIATMIFGVAAIGMQGAAFAADPAGAQYKADKKKADADYKTAKKKCGPMKGNDKDVC 60 + KI+ATM+ GVA A AAD A A YKA + ADA YK K KC + GN KDVC Sbjct: 14 INKILATMLIGVAGFSGTSLALAADSAKASYKAAEDAADATYKADKAKCDELSGNGKDVC 73 Query: 61 EKEAKAAHESALADAKAKRKGA-EADKDARKDKNDANYDVAKEKCDAMSGDAKDQCVANA 119 K+AKA E DAKA+ K +A ARK + DA+Y VAKEKCDA++G+AKD CV A Sbjct: 74 LKQAKATREHTKQDAKAEYKNTPKAVAGARKSEADADYAVAKEKCDALAGNAKDVCVKQA 133 Query: 120 KS 121 K+ Sbjct: 134 KA 135 >ref|YP_003979298.1| hypothetical protein AXYL_03263 [Achromobacter xylosoxidans A8] gb|ADP16583.1| hypothetical protein AXYL_03263 [Achromobacter xylosoxidans A8] Length = 127 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 58/126 (46%), Positives = 81/126 (64%), Gaps = 6/126 (4%) Query: 5 IATMIFGVAAIGMQGAAFAADPA-----GAQYKADKKKADADYKTAKKKCGPMKGNDKDV 59 ++ ++ A+ + AF A PA GA ++ D YK KK+C MKGN KDV Sbjct: 3 LSRVVLPAVALSLSALAFQA-PAQTMQGGATAVRSNEQIDDQYKLDKKRCDGMKGNQKDV 61 Query: 60 CEKEAKAAHESALADAKAKRKGAEADKDARKDKNDANYDVAKEKCDAMSGDAKDQCVANA 119 C+++A+A + A ADAKA ++ AEA DA K +NDA+Y V KEKCD MSG+AKD C+A+ Sbjct: 62 CQQQAEATRDKARADAKAGKEKAEASHDAAKVRNDADYKVGKEKCDGMSGNAKDACMADL 121 Query: 120 KSKYGK 125 K++YGK Sbjct: 122 KTRYGK 127 >gb|EFV85657.1| hypothetical protein HMPREF0005_05040 [Achromobacter xylosoxidans C54] Length = 132 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 49/87 (56%), Positives = 67/87 (77%) Query: 39 DADYKTAKKKCGPMKGNDKDVCEKEAKAAHESALADAKAKRKGAEADKDARKDKNDANYD 98 D YK KK+C MKGN KDVCE++A+A + A ADAK+ ++ AEA+ DA K +N+A+Y Sbjct: 46 DNQYKMDKKQCDAMKGNQKDVCEQQAQATRDKARADAKSGKEKAEANHDAAKARNEADYK 105 Query: 99 VAKEKCDAMSGDAKDQCVANAKSKYGK 125 V KEKCDAMSG+AKD C+A+ K+++GK Sbjct: 106 VGKEKCDAMSGNAKDTCLADLKTRHGK 132 >ref|YP_001796813.1| hypothetical protein RALTA_B0381 [Cupriavidus taiwanensis LMG 19424] emb|CAP63576.1| conserved hypothetical protein [Cupriavidus taiwanensis LMG 19424] Length = 204 Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 60/105 (57%), Positives = 71/105 (67%), Gaps = 8/105 (7%) Query: 29 AQYKADKKKADADYKTAKKKCGPMKGNDKDVCEKEAKAAHESALADAK--------AKRK 80 A KA+K KAD DY AK+ C KGNDKDVC+K+AKAAHE AL AK ++ Sbjct: 100 AMAKAEKTKADRDYDVAKEMCDDKKGNDKDVCKKDAKAAHEKALTAAKVDKAAATGSRSD 159 Query: 81 GAEADKDARKDKNDANYDVAKEKCDAMSGDAKDQCVANAKSKYGK 125 AEA DA+KD DA Y KE+CDAMSGDAKD+C A+ K+KYGK Sbjct: 160 VAEARADAKKDTMDAAYKADKERCDAMSGDAKDKCQADVKAKYGK 204 >ref|YP_728746.1| periplasmic protein [Ralstonia eutropha H16] emb|CAJ95381.1| conserved hypothetical periplasmic protein [Ralstonia eutropha H16] Length = 202 Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 60/105 (57%), Positives = 70/105 (66%), Gaps = 8/105 (7%) Query: 29 AQYKADKKKADADYKTAKKKCGPMKGNDKDVCEKEAKAAHESALADAKAKRKGA------ 82 A KA+K KAD DY AK+ C KGNDKDVC+K+AKAAHE AL AK + A Sbjct: 98 ATAKAEKTKADRDYDVAKEMCDDKKGNDKDVCKKDAKAAHEKALMAAKVDKAAATGSRAD 157 Query: 83 --EADKDARKDKNDANYDVAKEKCDAMSGDAKDQCVANAKSKYGK 125 EA DA+KD DA Y KE+CDAMSGDAKD+C A+ K+KYGK Sbjct: 158 VAEARADAKKDATDAAYKADKERCDAMSGDAKDKCQADVKAKYGK 202 Score = 65.1 bits (157), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 49/98 (50%), Positives = 60/98 (61%), Gaps = 1/98 (1%) Query: 29 AQYKADKKKADADYKTAKKKCGPMKGNDKDVCEKEAKAAHESALADAKAKRKGAE-ADKD 87 A Y A K+ADADYK A KC MK N KDVC+ EAK + A A A+A+R G + A Sbjct: 42 ADYDAAVKQADADYKAASAKCNGMKDNAKDVCKAEAKRDRDVAKAQAEARRDGTQKATAK 101 Query: 88 ARKDKNDANYDVAKEKCDAMSGDAKDQCVANAKSKYGK 125 A K K D +YDVAKE CD G+ KD C +AK+ + K Sbjct: 102 AEKTKADRDYDVAKEMCDDKKGNDKDVCKKDAKAAHEK 139 >ref|YP_001354302.1| hypothetical protein mma_2612 [Janthinobacterium sp. Marseille] gb|ABR90910.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 180 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 55/94 (58%), Positives = 67/94 (71%), Gaps = 1/94 (1%) Query: 26 PAGAQYKADKKKADADYKTAKKKCGPMKGNDKDVCEKEAKAAHESALADAKAKRKGAEAD 85 PA A KA ADA+YK AK+KC GN KDVC KEAKAAH SA+ADAKA ++ +A Sbjct: 84 PA-AHKKARTDIADANYKVAKEKCDDFNGNQKDVCVKEAKAAHTSAIADAKASKEVTDAR 142 Query: 86 KDARKDKNDANYDVAKEKCDAMSGDAKDQCVANA 119 KDAR +K DAN V KEKCDA++G+ K +C+A A Sbjct: 143 KDARDEKVDANVAVKKEKCDALAGEEKSRCIAAA 176 Score = 87.0 bits (214), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 60/125 (48%), Positives = 79/125 (63%), Gaps = 2/125 (1%) Query: 1 MKKIIATMIFGVAAIGMQGAAFAA-DPAGAQYKADKKKADADYKTAKKKCGPMKGNDKDV 59 MKK ++ ++ A+ G A+ AA + A A Y A K +A+ADYK A+ C +KGN KDV Sbjct: 1 MKKSLSMIVMAAASFGFMSASSAAPNEAKANYDAAKTRAEADYKVARAHCDSLKGNAKDV 60 Query: 60 CEKEAKAAHESALADAKAKRKGAE-ADKDARKDKNDANYDVAKEKCDAMSGDAKDQCVAN 118 C++EAKA A A+A+A KG A K AR D DANY VAKEKCD +G+ KD CV Sbjct: 61 CQEEAKAGEVKAKAEAEAAYKGTPAAHKKARTDIADANYKVAKEKCDDFNGNQKDVCVKE 120 Query: 119 AKSKY 123 AK+ + Sbjct: 121 AKAAH 125 >ref|YP_001020225.1| hypothetical protein Mpe_A1028 [Methylibium petroleiphilum PM1] gb|ABM93990.1| conserved hypothetical protein [Methylibium petroleiphilum PM1] Length = 186 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 54/106 (50%), Positives = 71/106 (66%), Gaps = 1/106 (0%) Query: 20 AAFAADPAGAQYKADKKKADADYKTAKKKCGPMKGNDKDVCEKEAKAAHESALADAKAKR 79 AA+ P G + K + KAD Y+ AK++C + GN KDVC +EAKAAH A ADAK Sbjct: 81 AAYTGKP-GDRAKVAEVKADTAYEVAKERCDDLAGNAKDVCVQEAKAAHTKARADAKLVS 139 Query: 80 KGAEADKDARKDKNDANYDVAKEKCDAMSGDAKDQCVANAKSKYGK 125 +A +AR +K +ANY V EKCDA++GDAK CVA+AK++YGK Sbjct: 140 ATGKAQMEARDEKREANYKVEAEKCDALAGDAKSTCVADAKARYGK 185 >ref|YP_297706.1| hypothetical protein Reut_B3504 [Ralstonia eutropha JMP134] gb|AAZ62862.1| conserved hypothetical protein [Ralstonia eutropha JMP134] Length = 192 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 55/105 (52%), Positives = 69/105 (65%), Gaps = 8/105 (7%) Query: 29 AQYKADKKKADADYKTAKKKCGPMKGNDKDVCEKEAKAAHESALADAKAKRKG------- 81 A KA K KAD DY AK+ C GNDKDVC+K+AK AHE AL +AK ++ Sbjct: 88 AHAKALKTKADRDYDVAKEMCDDKSGNDKDVCKKDAKTAHEKALGEAKVEKAAATGTRTD 147 Query: 82 -AEADKDARKDKNDANYDVAKEKCDAMSGDAKDQCVANAKSKYGK 125 AEA +DARKD DA Y KE+CDAM+GD+KD+C A+ K+KY + Sbjct: 148 VAEARRDARKDTTDAAYKADKERCDAMTGDSKDKCQADVKAKYAR 192 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 56/128 (43%), Positives = 71/128 (55%), Gaps = 3/128 (2%) Query: 1 MKKIIATMIFGVAAIGMQGAAFAADPAG--AQYKADKKKADADYKTAKKKCGPMKGNDKD 58 MKK ++ + + G A A G A Y K+A+ +YK A KC MKGN KD Sbjct: 2 MKKWLSAAVCSMMFAAPAGFAVAQTHTGSKADYDTAVKQANDNYKAAMGKCDGMKGNAKD 61 Query: 59 VCEKEAKAAHESALADAKAKRKGAE-ADKDARKDKNDANYDVAKEKCDAMSGDAKDQCVA 117 VC+ EAK + A ADA+A R G E A A K K D +YDVAKE CD SG+ KD C Sbjct: 62 VCKAEAKRDRDVAKADAEATRDGTEKAHAKALKTKADRDYDVAKEMCDDKSGNDKDVCKK 121 Query: 118 NAKSKYGK 125 +AK+ + K Sbjct: 122 DAKTAHEK 129 >ref|YP_001901259.1| hypothetical protein Rpic_3709 [Ralstonia pickettii 12J] ref|ZP_07674983.1| conserved hypothetical protein [Ralstonia sp. 5_7_47FAA] gb|ACD28827.1| conserved hypothetical periplasmic protein [Ralstonia pickettii 12J] gb|EFP66581.1| conserved hypothetical protein [Ralstonia sp. 5_7_47FAA] Length = 204 Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/130 (44%), Positives = 79/130 (60%), Gaps = 8/130 (6%) Query: 4 IIATMIFGVA-------AIGMQGAAFAADPAGAQYKADKKKADADYKTAKKKCGPMKGND 56 ++A G+A G GA+ D A Y + K+ADA+YK AK KC MKGND Sbjct: 12 VLACAPLGIAHAQTTPAPTGPAGASAPNDAKRAAYDSAVKQADANYKAAKDKCDAMKGND 71 Query: 57 KDVCEKEAKAAHESALADAKAKRKGAEADKD-ARKDKNDANYDVAKEKCDAMSGDAKDQC 115 +DVC +AK + A A+A +R G EA ++ A K+K +A+YDVAK KCDAM G+ KD C Sbjct: 72 RDVCRAQAKGDYNVAKANAVVERDGTEAARNRAAKEKAEADYDVAKTKCDAMKGNDKDTC 131 Query: 116 VANAKSKYGK 125 V +AK+ Y + Sbjct: 132 VKDAKAAYTR 141 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 55/105 (52%), Positives = 71/105 (67%), Gaps = 8/105 (7%) Query: 29 AQYKADKKKADADYKTAKKKCGPMKGNDKDVCEKEAKAAHESA-----LADAKAK---RK 80 A+ +A K+KA+ADY AK KC MKGNDKD C K+AKAA+ A ++ AKA + Sbjct: 100 ARNRAAKEKAEADYDVAKTKCDAMKGNDKDTCVKDAKAAYTRAKGGEEVSHAKATGTAKD 159 Query: 81 GAEADKDARKDKNDANYDVAKEKCDAMSGDAKDQCVANAKSKYGK 125 +EA +DA KD NDANY AKE+CDAMSGDAK +C + +K+ K Sbjct: 160 VSEARRDAVKDTNDANYKAAKERCDAMSGDAKTKCQNDVAAKFKK 204