BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0328.p (193 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774624.1| virulence regulator protein [Herbaspirillum ... 397 e-109 ref|ZP_08272828.1| two component transcriptional regulator, LuxR... 343 8e-93 ref|YP_001354299.1| LuxR family DNA-binding response regulator [... 330 8e-89 ref|YP_004754072.1| response regulator protein VsrD (LuxRfamily)... 327 6e-88 ref|YP_001100767.1| response regulator [Herminiimonas arsenicoxy... 324 4e-87 ref|YP_001795491.1| LuxR family transcriptional regulator [Cupri... 215 2e-54 ref|YP_004683994.1| response regulator GacA [Cupriavidus necator... 214 4e-54 ref|YP_724673.1| response regulator [Ralstonia eutropha H16] >gi... 214 4e-54 gb|AAA66240.1| VsrD [Ralstonia solanacearum] >gi|133854394|gb|AB... 214 4e-54 ref|YP_002980135.1| two component LuxR family transcriptional re... 214 6e-54 >ref|YP_003774624.1| virulence regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62716.1| virulence regulator protein [Herbaspirillum seropedicae SmR1] Length = 209 Score = 397 bits (1019), Expect = e-109, Method: Compositional matrix adjust. Identities = 193/193 (100%), Positives = 193/193 (100%) Query: 1 VHHFISEIPSMEIGGEASTAEEAIRLVRTQDWDIVLLDIAMPDKSGVEVLKQIKREKPEL 60 VHHFISEIPSMEIGGEASTAEEAIRLVRTQDWDIVLLDIAMPDKSGVEVLKQIKREKPEL Sbjct: 17 VHHFISEIPSMEIGGEASTAEEAIRLVRTQDWDIVLLDIAMPDKSGVEVLKQIKREKPEL 76 Query: 61 PVLMLSMHPESRYAVQVLRSGASGYVQKEALATELVNAINTILRGHKYISYGVAELLTSE 120 PVLMLSMHPESRYAVQVLRSGASGYVQKEALATELVNAINTILRGHKYISYGVAELLTSE Sbjct: 77 PVLMLSMHPESRYAVQVLRSGASGYVQKEALATELVNAINTILRGHKYISYGVAELLTSE 136 Query: 121 PVDSEKPLHETLSQREYEIFYKLGQGQGVTQIADELCLSVKTVSTYRSRVLQKMSMTNNA 180 PVDSEKPLHETLSQREYEIFYKLGQGQGVTQIADELCLSVKTVSTYRSRVLQKMSMTNNA Sbjct: 137 PVDSEKPLHETLSQREYEIFYKLGQGQGVTQIADELCLSVKTVSTYRSRVLQKMSMTNNA 196 Query: 181 DIIYYAIKNNLID 193 DIIYYAIKNNLID Sbjct: 197 DIIYYAIKNNLID 209 >ref|ZP_08272828.1| two component transcriptional regulator, LuxR family [Oxalobacteraceae bacterium IMCC9480] gb|EGF33698.1| two component transcriptional regulator, LuxR family [Oxalobacteraceae bacterium IMCC9480] Length = 210 Score = 343 bits (880), Expect = 8e-93, Method: Compositional matrix adjust. Identities = 163/194 (84%), Positives = 182/194 (93%), Gaps = 1/194 (0%) Query: 1 VHHFISEIPSMEIGGEASTAEEAIRLVRTQDWDIVLLDIAMPDKSGVEVLKQIKREKPEL 60 VH+FI +IP MEIGGEA TAEEAIRL+R +DWDIV+LDIAMPDKSGVEVLKQIKREKP+L Sbjct: 17 VHYFIDDIPDMEIGGEAGTAEEAIRLIRAEDWDIVVLDIAMPDKSGVEVLKQIKREKPDL 76 Query: 61 PVLMLSMHPESRYAVQVLRSGASGYVQKEALATELVNAINTILRGHKYISYGVAELLTSE 120 PVL+LSMHPE+RYAVQ+LRSGASGYVQKEALATELVNAI TI+RGHKYISY VAELLT + Sbjct: 77 PVLILSMHPENRYAVQILRSGASGYVQKEALATELVNAIQTIMRGHKYISYAVAELLTMD 136 Query: 121 P-VDSEKPLHETLSQREYEIFYKLGQGQGVTQIADELCLSVKTVSTYRSRVLQKMSMTNN 179 P +++KPLHETLS REYEIFYKL QG+GVT+IADELCLSVKTVSTYR+RVLQKM+MT+N Sbjct: 137 PDTNADKPLHETLSAREYEIFYKLSQGEGVTKIADELCLSVKTVSTYRARVLQKMNMTSN 196 Query: 180 ADIIYYAIKNNLID 193 ADIIYYAIK NLID Sbjct: 197 ADIIYYAIKQNLID 210 >ref|YP_001354299.1| LuxR family DNA-binding response regulator [Janthinobacterium sp. Marseille] gb|ABR89951.1| DNA-binding response regulator, LuxR family [Janthinobacterium sp. Marseille] Length = 210 Score = 330 bits (845), Expect = 8e-89, Method: Compositional matrix adjust. Identities = 161/194 (82%), Positives = 177/194 (91%), Gaps = 1/194 (0%) Query: 1 VHHFISEIPSMEIGGEASTAEEAIRLVRTQDWDIVLLDIAMPDKSGVEVLKQIKREKPEL 60 V +FI+++P M+I GEA+TA+EAIRLVR QDWDIVLLDI MPDKSGVEVLKQIKREKPEL Sbjct: 17 VQYFIAQVPDMKIEGEAATAQEAIRLVRAQDWDIVLLDINMPDKSGVEVLKQIKREKPEL 76 Query: 61 PVLMLSMHPESRYAVQVLRSGASGYVQKEALATELVNAINTILRGHKYISYGVAELLTSE 120 PVL+LSMHPESRYAVQ+LRSGASGYVQKEALA ELVNAI TILRGHKYIS+ VAELLT+E Sbjct: 77 PVLILSMHPESRYAVQILRSGASGYVQKEALAEELVNAIQTILRGHKYISHTVAELLTTE 136 Query: 121 -PVDSEKPLHETLSQREYEIFYKLGQGQGVTQIADELCLSVKTVSTYRSRVLQKMSMTNN 179 +EKPLHETLS+REYEIFYKL QG GVT+IADELCLSVKTVSTYR+RVLQKM+M NN Sbjct: 137 LDTSTEKPLHETLSKREYEIFYKLCQGHGVTKIADELCLSVKTVSTYRARVLQKMNMENN 196 Query: 180 ADIIYYAIKNNLID 193 A IIYYAIK NLID Sbjct: 197 AGIIYYAIKQNLID 210 >ref|YP_004754072.1| response regulator protein VsrD (LuxRfamily) [Collimonas fungivorans Ter331] gb|AEK63249.1| Response regulator protein VsrD (LuxRfamily) [Collimonas fungivorans Ter331] Length = 210 Score = 327 bits (838), Expect = 6e-88, Method: Compositional matrix adjust. Identities = 157/194 (80%), Positives = 177/194 (91%), Gaps = 1/194 (0%) Query: 1 VHHFISEIPSMEIGGEASTAEEAIRLVRTQDWDIVLLDIAMPDKSGVEVLKQIKREKPEL 60 V +FI++IP MEI GEA+ A+EAIRL+R+QD+DIVLLDIAMPDKSGVEVLKQIKREKP L Sbjct: 17 VQYFIADIPEMEITGEAANAQEAIRLIRSQDYDIVLLDIAMPDKSGVEVLKQIKREKPLL 76 Query: 61 PVLMLSMHPESRYAVQVLRSGASGYVQKEALATELVNAINTILRGHKYISYGVAELLTSE 120 PVL+LSMHPESRYAVQVLRSGA GYVQKEALA ELV AI T+L+GHKYISY VAELLT++ Sbjct: 77 PVLILSMHPESRYAVQVLRSGADGYVQKEALAIELVKAIETVLQGHKYISYAVAELLTAD 136 Query: 121 PVDSEK-PLHETLSQREYEIFYKLGQGQGVTQIADELCLSVKTVSTYRSRVLQKMSMTNN 179 P +E PLHETLS REYEIFYKL QG+GVT+IA+ELCLSVKT+STYR+RVLQKMSM +N Sbjct: 137 PASNENTPLHETLSAREYEIFYKLSQGEGVTKIAEELCLSVKTISTYRTRVLQKMSMASN 196 Query: 180 ADIIYYAIKNNLID 193 ADIIYYAIKNNLID Sbjct: 197 ADIIYYAIKNNLID 210 >ref|YP_001100767.1| response regulator [Herminiimonas arsenicoxydans] emb|CAL62646.1| Response regulator receiver, LuxR family [Herminiimonas arsenicoxydans] Length = 210 Score = 324 bits (831), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 161/195 (82%), Positives = 177/195 (90%), Gaps = 3/195 (1%) Query: 1 VHHFISEIPSMEIGGEASTAEEAIRLVRTQDWDIVLLDIAMPDKSGVEVLKQIKREKPEL 60 V +FI+++P M I GEA+TA+EAIRLVR QDWDIVLLDI MPDKSGVEVLKQIKREKPEL Sbjct: 17 VQYFIAQVPDMCIEGEAATAQEAIRLVRAQDWDIVLLDINMPDKSGVEVLKQIKREKPEL 76 Query: 61 PVLMLSMHPESRYAVQVLRSGASGYVQKEALATELVNAINTILRGHKYISYGVAELLTSE 120 PVL+LSMHPESRYAVQ+LRSGASGYVQKEALA ELV AI TILRGHKYIS+ VAELLT+E Sbjct: 77 PVLILSMHPESRYAVQILRSGASGYVQKEALAEELVTAIQTILRGHKYISHTVAELLTAE 136 Query: 121 PVD--SEKPLHETLSQREYEIFYKLGQGQGVTQIADELCLSVKTVSTYRSRVLQKMSMTN 178 VD ++KPLHETLS+REYEIFYKL QG GVT+IADELCLSVKTVSTYR+RVLQKM+M N Sbjct: 137 -VDPNADKPLHETLSKREYEIFYKLCQGHGVTKIADELCLSVKTVSTYRARVLQKMNMEN 195 Query: 179 NADIIYYAIKNNLID 193 NA IIYYAIK NLID Sbjct: 196 NAGIIYYAIKQNLID 210 >ref|YP_001795491.1| LuxR family transcriptional regulator [Cupriavidus taiwanensis LMG 19424] emb|CAP62769.1| RESPONSE REGULATOR, LuxR family [Cupriavidus taiwanensis LMG 19424] Length = 210 Score = 215 bits (548), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 100/196 (51%), Positives = 151/196 (77%), Gaps = 5/196 (2%) Query: 1 VHHFISEIPSMEIGGEASTAEEAIRLVRTQDWDIVLLDIAMPDKSGVEVLKQIKREKPEL 60 + FISE P +++ GEA + +E + +R ++D+++LDI+MPD++G++VLK I++ KP+L Sbjct: 17 LRQFISEEPDIQVTGEAGSGDEVMAQLRDGEFDVLVLDISMPDRNGIDVLKLIRQRKPDL 76 Query: 61 PVLMLSMHPESRYAVQVLRSGASGYVQKEALATELVNAINTILRGHKYISYGVAELLTS- 119 PVL+LS +PE +YA+ ++R+GASGY+ KE+ +LV AI T+ +G +Y+S VA+LL Sbjct: 77 PVLILSTYPEDQYAINLIRAGASGYLTKESAPDDLVKAIRTVAQGRRYVSATVADLLIGG 136 Query: 120 --EPVDSEKPLHETLSQREYEIFYKLGQGQGVTQIADELCLSVKTVSTYRSRVLQKMSMT 177 +P +E+P+H+ LS+RE++IF KL +GQ V+ IADEL LSVKTVSTYRSR+L+KM M Sbjct: 137 LDKP--TEQPVHQMLSEREFQIFCKLSRGQSVSVIADELFLSVKTVSTYRSRILEKMGMK 194 Query: 178 NNADIIYYAIKNNLID 193 NAD+ YYAIKN L++ Sbjct: 195 TNADLTYYAIKNGLVE 210 >ref|YP_004683994.1| response regulator GacA [Cupriavidus necator N-1] gb|AEI75513.1| response regulator GacA [Cupriavidus necator N-1] Length = 210 Score = 214 bits (546), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 99/196 (50%), Positives = 151/196 (77%), Gaps = 5/196 (2%) Query: 1 VHHFISEIPSMEIGGEASTAEEAIRLVRTQDWDIVLLDIAMPDKSGVEVLKQIKREKPEL 60 + F+SE P +++ GEA + ++ + +R ++D+++LDI+MPD++G++VLK I++ KPEL Sbjct: 17 LRQFLSEEPDIQVTGEAGSGDQVMAQLRDAEFDVLVLDISMPDRNGIDVLKLIRQRKPEL 76 Query: 61 PVLMLSMHPESRYAVQVLRSGASGYVQKEALATELVNAINTILRGHKYISYGVAELLTS- 119 PVL+LS +PE +YA+ ++R+GASGY+ KE+ +LV AI T+ +G +Y+S VA+LL Sbjct: 77 PVLILSTYPEDQYAINLIRAGASGYLTKESAPDDLVKAIRTVAQGRRYVSATVADLLIGG 136 Query: 120 --EPVDSEKPLHETLSQREYEIFYKLGQGQGVTQIADELCLSVKTVSTYRSRVLQKMSMT 177 +P +E+P+H+ LS+RE++IF KL +GQ V+ IADEL LSVKTVSTYRSR+L+KM M Sbjct: 137 LDKP--TEQPVHQMLSEREFQIFCKLSRGQSVSVIADELFLSVKTVSTYRSRILEKMGMK 194 Query: 178 NNADIIYYAIKNNLID 193 NAD+ YYAIKN L++ Sbjct: 195 TNADLTYYAIKNGLVE 210 >ref|YP_724673.1| response regulator [Ralstonia eutropha H16] emb|CAJ91305.1| response regulator, NarL-family [Ralstonia eutropha H16] Length = 210 Score = 214 bits (546), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 99/196 (50%), Positives = 151/196 (77%), Gaps = 5/196 (2%) Query: 1 VHHFISEIPSMEIGGEASTAEEAIRLVRTQDWDIVLLDIAMPDKSGVEVLKQIKREKPEL 60 + F+SE P +++ GEA + ++ + +R ++D+++LDI+MPD++G++VLK I++ KPEL Sbjct: 17 LRQFLSEEPDIQVTGEAGSGDQVMAQLRDAEFDVLVLDISMPDRNGIDVLKLIRQRKPEL 76 Query: 61 PVLMLSMHPESRYAVQVLRSGASGYVQKEALATELVNAINTILRGHKYISYGVAELLTS- 119 PVL+LS +PE +YA+ ++R+GASGY+ KE+ +LV AI T+ +G +Y+S VA+LL Sbjct: 77 PVLILSTYPEDQYAINLIRAGASGYLTKESAPDDLVKAIRTVAQGRRYVSATVADLLIGG 136 Query: 120 --EPVDSEKPLHETLSQREYEIFYKLGQGQGVTQIADELCLSVKTVSTYRSRVLQKMSMT 177 +P +E+P+H+ LS+RE++IF KL +GQ V+ IADEL LSVKTVSTYRSR+L+KM M Sbjct: 137 LDKP--TEQPVHQMLSEREFQIFCKLSRGQSVSVIADELFLSVKTVSTYRSRILEKMGMK 194 Query: 178 NNADIIYYAIKNNLID 193 NAD+ YYAIKN L++ Sbjct: 195 TNADLTYYAIKNGLVE 210 >gb|AAA66240.1| VsrD [Ralstonia solanacearum] gb|ABO39206.1| VsrD [Ralstonia solanacearum] Length = 210 Score = 214 bits (546), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 101/196 (51%), Positives = 150/196 (76%), Gaps = 5/196 (2%) Query: 1 VHHFISEIPSMEIGGEASTAEEAIRLVRTQDWDIVLLDIAMPDKSGVEVLKQIKREKPEL 60 + F+SE +E+ GEA++ EE + +RT+ +D+V+LDI+MPD++G++ LK +++ P+L Sbjct: 17 LRQFLSEERDIEVAGEAASGEEVMEQLRTEAFDVVVLDISMPDRNGIDTLKLVRQRHPDL 76 Query: 61 PVLMLSMHPESRYAVQVLRSGASGYVQKEALATELVNAINTILRGHKYISYGVAELLTS- 119 PVL+LS PE +YA+ ++R+GASGY+ KE+ ELV AI T+ +G +Y+S VAELL Sbjct: 77 PVLILSTFPEDQYAINLIRAGASGYLTKESAPDELVKAIRTVSQGRRYVSPTVAELLIGG 136 Query: 120 --EPVDSEKPLHETLSQREYEIFYKLGQGQGVTQIADELCLSVKTVSTYRSRVLQKMSMT 177 +P D +PLH+TLS+RE++IF KL +GQ V+ IA+EL LSVKTVSTYR+R+L+KM M Sbjct: 137 LEKPTD--QPLHQTLSKREFQIFCKLARGQSVSIIAEELFLSVKTVSTYRTRILEKMGMK 194 Query: 178 NNADIIYYAIKNNLID 193 +NAD+ YYAIKN L++ Sbjct: 195 SNADLTYYAIKNGLVE 210 >ref|YP_002980135.1| two component LuxR family transcriptional regulator [Ralstonia pickettii 12D] gb|ACS61463.1| two component transcriptional regulator, LuxR family [Ralstonia pickettii 12D] Length = 210 Score = 214 bits (545), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 102/196 (52%), Positives = 149/196 (76%), Gaps = 5/196 (2%) Query: 1 VHHFISEIPSMEIGGEASTAEEAIRLVRTQDWDIVLLDIAMPDKSGVEVLKQIKREKPEL 60 + F+SE +E+ GEA++ EEA+ +RT +D+V+LDI+MPD++G++ LK ++ P+L Sbjct: 17 LRQFLSEERDIEVAGEAASGEEAMEQLRTGAFDVVVLDISMPDRNGIDTLKLARQRHPDL 76 Query: 61 PVLMLSMHPESRYAVQVLRSGASGYVQKEALATELVNAINTILRGHKYISYGVAELLTS- 119 PVL+LS PE +YA+ ++R+GASGY+ KE+ ELV AI T+ +G +Y+S VAELL Sbjct: 77 PVLILSTFPEDQYAINLIRAGASGYLTKESAPDELVKAIRTVSQGRRYVSPTVAELLIGG 136 Query: 120 --EPVDSEKPLHETLSQREYEIFYKLGQGQGVTQIADELCLSVKTVSTYRSRVLQKMSMT 177 +P D +PLH+TLS+RE++IF KL +GQ V+ IA+EL LSVKTVSTYR+R+L+KM M Sbjct: 137 LEKPTD--QPLHQTLSKREFQIFCKLARGQSVSVIAEELFLSVKTVSTYRTRILEKMGMK 194 Query: 178 NNADIIYYAIKNNLID 193 +NAD+ YYAIKN L++ Sbjct: 195 SNADLTYYAIKNGLVE 210