BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0327.p (164 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774625.1| CheY-like response regulator receiver domain... 335 9e-91 ref|YP_004754071.1| putative response regulator receiver domain-... 134 4e-30 ref|YP_001354300.1| CheY-like domain-containing protein [Janthin... 128 3e-28 ref|ZP_08272829.1| Putative response regulator receiver domain p... 122 2e-26 ref|YP_001100768.1| response regulator [Herminiimonas arsenicoxy... 121 4e-26 ref|NP_518412.1| transcription regulator protein [Ralstonia sola... 95 3e-18 ref|YP_003746959.1| response regulator, chey family [Ralstonia s... 95 3e-18 ref|ZP_00945542.1| Hypothetical Protein RRSL_01655 [Ralstonia so... 95 3e-18 gb|AEG70406.1| transcriptional regulatory protein [Ralstonia sol... 95 4e-18 ref|YP_559545.1| response regulator receiver domain-containing p... 95 4e-18 >ref|YP_003774625.1| CheY-like response regulator receiver domain-containing protein [Herbaspirillum seropedicae SmR1] gb|ADJ62717.1| CheY-like response regulator receiver domain protein [Herbaspirillum seropedicae SmR1] Length = 169 Score = 335 bits (860), Expect = 9e-91, Method: Compositional matrix adjust. Identities = 164/164 (100%), Positives = 164/164 (100%) Query: 1 MDDTLNTRPQRDSEGTPLRIFLVEDSEDVRDLIVESLAEIGGVRLVGYAETEMDALRHLQ 60 MDDTLNTRPQRDSEGTPLRIFLVEDSEDVRDLIVESLAEIGGVRLVGYAETEMDALRHLQ Sbjct: 6 MDDTLNTRPQRDSEGTPLRIFLVEDSEDVRDLIVESLAEIGGVRLVGYAETEMDALRHLQ 65 Query: 61 QHSYDVLILDIQLKQGNGMSLLQALARSNTRRQSEIKVVFSNHVSPTYRRVGVQCGVQHF 120 QHSYDVLILDIQLKQGNGMSLLQALARSNTRRQSEIKVVFSNHVSPTYRRVGVQCGVQHF Sbjct: 66 QHSYDVLILDIQLKQGNGMSLLQALARSNTRRQSEIKVVFSNHVSPTYRRVGVQCGVQHF 125 Query: 121 FDKSSELPLLCDLLEELAQQRAGKAGRTSSSNNSPQGPAQAGGI 164 FDKSSELPLLCDLLEELAQQRAGKAGRTSSSNNSPQGPAQAGGI Sbjct: 126 FDKSSELPLLCDLLEELAQQRAGKAGRTSSSNNSPQGPAQAGGI 169 >ref|YP_004754071.1| putative response regulator receiver domain-containing protein [Collimonas fungivorans Ter331] gb|AEK63248.1| Putative response regulator receiver domain protein [Collimonas fungivorans Ter331] Length = 142 Score = 134 bits (337), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 72/137 (52%), Positives = 94/137 (68%), Gaps = 2/137 (1%) Query: 1 MDDTLNTRPQRDSEGTPLRIFLVEDSEDVRDLIVESLAEIGGVRLVGYAETEMDALRHLQ 60 MD T T S TPLRIFLVEDS VR+L++++L+EI GV G+AE E DAL+ + Sbjct: 1 MDHT-TTSDIAKSGATPLRIFLVEDSAAVRNLMIDTLSEIPGVVFAGFAEGEGDALKKID 59 Query: 61 QHSYDVLILDIQLKQGNGMSLLQALARSNTRRQSEIKVVFSNHVSPTYRRVGVQCGVQHF 120 +DVLILDI+LK+GNGMSLL+ LA ++ S +K++FSN+VS +R G + GV+ F Sbjct: 60 AEPFDVLILDIELKEGNGMSLLRTLAEAHKPLNS-LKIIFSNNVSNAFRNAGAKYGVRFF 118 Query: 121 FDKSSELPLLCDLLEEL 137 FDKSSE L DLL L Sbjct: 119 FDKSSEFTQLRDLLAAL 135 >ref|YP_001354300.1| CheY-like domain-containing protein [Janthinobacterium sp. Marseille] gb|ABR91314.1| CheY-like response regulator receiver domain protein [Janthinobacterium sp. Marseille] Length = 144 Score = 128 bits (321), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 67/136 (49%), Positives = 95/136 (69%), Gaps = 1/136 (0%) Query: 12 DSEGTPLRIFLVEDSEDVRDLIVESLAEIGGVRLVGYAETEMDALRHLQQHSYDVLILDI 71 +S PLRIFLVEDS DVR+L++E+LA I GV + G +E+E DAL L DVLI+DI Sbjct: 9 NSVSHPLRIFLVEDSLDVRELMIENLAMIPGVVVAGVSESEGDALNQLNALPCDVLIVDI 68 Query: 72 QLKQGNGMSLLQALARSNTRRQSEIKVVFSNHVSPTYRRVGVQCGVQHFFDKSSELPLLC 131 QLK+GNG++LL+ ++ T+ + +K++ SN+ + +RRVG Q GV HFFDK+SE P L Sbjct: 69 QLKKGNGINLLRQISEK-TKISNTLKIICSNNATEVFRRVGRQYGVNHFFDKTSEFPQLF 127 Query: 132 DLLEELAQQRAGKAGR 147 +L++ L+ R GR Sbjct: 128 ELVKNLSCARLEYNGR 143 >ref|ZP_08272829.1| Putative response regulator receiver domain protein [Oxalobacteraceae bacterium IMCC9480] gb|EGF33699.1| Putative response regulator receiver domain protein [Oxalobacteraceae bacterium IMCC9480] Length = 140 Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 59/122 (48%), Positives = 92/122 (75%), Gaps = 1/122 (0%) Query: 17 PLRIFLVEDSEDVRDLIVESLAEIGGVRLVGYAETEMDALRHLQQHSYDVLILDIQLKQG 76 PL++FL+EDS VR+L++ES A+I G+ L+G+A++E +A L++ D+LILDIQL+QG Sbjct: 8 PLQVFLIEDSSLVRELVIESFADIPGITLIGHADSEDEAFDQLERQRCDILILDIQLRQG 67 Query: 77 NGMSLLQALARSNTRRQSEIKVVFSNHVSPTYRRVGVQCGVQHFFDKSSELPLLCDLLEE 136 NG++LL+ L S ++ +I+++FSN+VS Y R+ Q GVQ+FFDK+SE + +LLE+ Sbjct: 68 NGINLLRRLG-SQPQQNKQIRIIFSNNVSKGYHRLAGQLGVQYFFDKTSEFTDMRELLEQ 126 Query: 137 LA 138 L Sbjct: 127 LG 128 >ref|YP_001100768.1| response regulator [Herminiimonas arsenicoxydans] emb|CAL62647.1| Putative two-component response regulator CheY-like [Herminiimonas arsenicoxydans] Length = 141 Score = 121 bits (303), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 65/128 (50%), Positives = 92/128 (71%), Gaps = 4/128 (3%) Query: 12 DSEGTPLRIFLVEDSEDVRDLIVESLAEIGGVRLVGYAETEMDALRHLQQHSYDVLILDI 71 D+ PL IFLVEDS DVR+L++E+LA I GV + G +E+E DAL L D+LI+DI Sbjct: 7 DAGCNPLHIFLVEDSLDVRELMIENLAMIPGVVVSGVSESESDALAQLDMQPCDILIVDI 66 Query: 72 QLKQGNGMSLLQALARSNTRRQSE-IKVVFSNHVSPTYRRVGVQCGVQHFFDKSSELPLL 130 QLK+GNG++LL+ L+ RR S+ +K++ SN+ + +RRVG Q GV HFFDK+SE P L Sbjct: 67 QLKKGNGINLLRQLSE---RRTSDLVKIICSNNSTEIFRRVGRQYGVDHFFDKTSEFPQL 123 Query: 131 CDLLEELA 138 +L+ +L+ Sbjct: 124 FNLVRDLS 131 >ref|NP_518412.1| transcription regulator protein [Ralstonia solanacearum GMI1000] emb|CAD13819.1| putative transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 146 Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 54/140 (38%), Positives = 85/140 (60%), Gaps = 8/140 (5%) Query: 18 LRIFLVEDSEDVRDLIVESLAEIGGVRLVGYAETEMDALRHLQQHSYDVLILDIQLKQGN 77 LR+ L+EDS +R +++E L V +V +A+TE ALR L Q YDV+I+D+QL+QGN Sbjct: 13 LRVLLIEDSPVLRGMVLEYLKASAFVAVVEWADTEDLALRLLAQGHYDVVIVDLQLRQGN 72 Query: 78 GMSLLQALARSNTRRQSEIKVVFSNHVS-PTYRRVGVQCGVQHFFDKSSELPLLCDLLEE 136 G +LQ+L + +++V++NH PTYR+ + G +FFDKS EL D + E Sbjct: 73 GFKVLQSL---RDQASPSVRIVYTNHAQVPTYRQRCFEAGANYFFDKSLEL----DKVFE 125 Query: 137 LAQQRAGKAGRTSSSNNSPQ 156 + ++RAG +++ P Sbjct: 126 VIEERAGMVRPRPQADHHPH 145 >ref|YP_003746959.1| response regulator, chey family [Ralstonia solanacearum CFBP2957] gb|AAA66241.1| orfX [Ralstonia solanacearum] emb|CBJ44377.1| putative response regulator, CheY family [Ralstonia solanacearum CFBP2957] Length = 146 Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 54/140 (38%), Positives = 84/140 (60%), Gaps = 8/140 (5%) Query: 18 LRIFLVEDSEDVRDLIVESLAEIGGVRLVGYAETEMDALRHLQQHSYDVLILDIQLKQGN 77 LR+ L+EDS +R +++E L V +V +A+TE ALR L Q YDV+I+D+QL+QGN Sbjct: 13 LRVLLIEDSPVLRSMVLEYLKASAFVAVVEWADTEDLALRLLAQGPYDVVIVDLQLRQGN 72 Query: 78 GMSLLQALARSNTRRQSEIKVVFSNHVS-PTYRRVGVQCGVQHFFDKSSELPLLCDLLEE 136 G +LQ+L + +++V++NH PTYR+ + G +FFDKS EL D + E Sbjct: 73 GFKVLQSL---RDQASPSVRIVYTNHAQVPTYRQRCFEAGANYFFDKSLEL----DKVFE 125 Query: 137 LAQQRAGKAGRTSSSNNSPQ 156 + ++RAG + + P Sbjct: 126 VIEERAGMVRPRPQAAHHPH 145 >ref|ZP_00945542.1| Hypothetical Protein RRSL_01655 [Ralstonia solanacearum UW551] ref|YP_002258522.1| transcription regulator protein [Ralstonia solanacearum IPO1609] gb|EAP71982.1| Hypothetical Protein RRSL_01655 [Ralstonia solanacearum UW551] emb|CAQ56583.1| hypothetical protein RSMK04064 [Ralstonia solanacearum MolK2] emb|CAQ60445.1| transcription regulator protein [Ralstonia solanacearum IPO1609] Length = 146 Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 54/140 (38%), Positives = 83/140 (59%), Gaps = 8/140 (5%) Query: 18 LRIFLVEDSEDVRDLIVESLAEIGGVRLVGYAETEMDALRHLQQHSYDVLILDIQLKQGN 77 LR+ L+EDS +R +++E L V +V +A+TE ALR L Q YDV+I+D+QL+QGN Sbjct: 13 LRVLLIEDSPVLRSMVLEYLKASAFVAVVEWADTEDLALRLLTQGPYDVVIVDLQLRQGN 72 Query: 78 GMSLLQALARSNTRRQSEIKVVFSNHVS-PTYRRVGVQCGVQHFFDKSSELPLLCDLLEE 136 G +LQ L + +++V++NH PTYR+ + G +FFDKS EL D + E Sbjct: 73 GFKVLQTL---RDQASPSVRIVYTNHAQVPTYRQRCFEAGANYFFDKSLEL----DKVFE 125 Query: 137 LAQQRAGKAGRTSSSNNSPQ 156 + ++RAG + + P Sbjct: 126 VIEERAGLVPPRPQAAHHPH 145 >gb|AEG70406.1| transcriptional regulatory protein [Ralstonia solanacearum Po82] Length = 146 Score = 94.7 bits (234), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 54/140 (38%), Positives = 83/140 (59%), Gaps = 8/140 (5%) Query: 18 LRIFLVEDSEDVRDLIVESLAEIGGVRLVGYAETEMDALRHLQQHSYDVLILDIQLKQGN 77 LR+ L+EDS +R +++E L V +V +A+TE ALR L Q YDV+I+D+QL+QGN Sbjct: 13 LRVLLIEDSPVLRSMVLEYLKASAFVAVVEWADTEDLALRLLTQGPYDVVIVDLQLRQGN 72 Query: 78 GMSLLQALARSNTRRQSEIKVVFSNHVS-PTYRRVGVQCGVQHFFDKSSELPLLCDLLEE 136 G +LQ L + +++V++NH PTYR+ + G +FFDKS EL D + E Sbjct: 73 GFKVLQTL---RDQASPSVRIVYTNHAQVPTYRQRCFEAGANYFFDKSLEL----DKVFE 125 Query: 137 LAQQRAGKAGRTSSSNNSPQ 156 + ++RAG + + P Sbjct: 126 VIEERAGMVRPRPQAAHHPH 145 >ref|YP_559545.1| response regulator receiver domain-containing protein [Burkholderia xenovorans LB400] gb|ABE31493.1| Response regulator receiver domain protein(CheY) [Burkholderia xenovorans LB400] Length = 149 Score = 94.7 bits (234), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 50/129 (38%), Positives = 76/129 (58%), Gaps = 1/129 (0%) Query: 16 TPLRIFLVEDSEDVRDLIVESLAEIGGVRLVGYAETEMDALRHLQQHSYDVLILDIQLKQ 75 TPLR+ L+EDS +R +VE++ G +++ YA++ +A+ L S+D +I+D+QLKQ Sbjct: 22 TPLRVLLIEDSPLIRRSLVEAIDASGLLKVAAYADSADEAIALLSDESFDAVIVDLQLKQ 81 Query: 76 GNGMSLLQALARSNTRRQSEIKVVFSNHVSPTYRRVGVQCGVQHFFDKSSELPLLCDLLE 135 G+G+ +L L R + V +NH P YR Q GV+HF+DKS E + D L Sbjct: 82 GSGVPVLAYLQREGL-IDTVFAAVLTNHALPAYRERCEQYGVRHFYDKSFEFDRVIDALH 140 Query: 136 ELAQQRAGK 144 + A R GK Sbjct: 141 DYAHARNGK 149