BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0326.p (677 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774626.1| transmembrane sensor histidine kinase [Herba... 1364 0.0 ref|YP_004754070.1| putative regulator; hypothetical protein [Co... 625 e-177 ref|ZP_08272923.1| putative regulator; putative membrane protein... 565 e-159 ref|YP_001354301.1| signal transduction histidine kinase [Janthi... 446 e-123 ref|YP_001100769.1| putative regulator protein [Herminiimonas ar... 436 e-120 ref|YP_003798713.1| putative sensor histidine kinase [Candidatus... 179 1e-42 ref|YP_001354607.1| Signal transduction histidine kinase [Janthi... 177 5e-42 ref|YP_460835.1| signal transduction histidine kinase [Syntrophu... 176 2e-41 ref|YP_002287632.1| signal transduction histidine kinase contain... 175 2e-41 ref|YP_725295.1| signal transduction histidine kinase [Ralstonia... 174 4e-41 >ref|YP_003774626.1| transmembrane sensor histidine kinase [Herbaspirillum seropedicae SmR1] gb|ADJ62718.1| transmembrane sensor histidine kinase protein [Herbaspirillum seropedicae SmR1] Length = 677 Score = 1364 bits (3530), Expect = 0.0, Method: Compositional matrix adjust. Identities = 676/677 (99%), Positives = 676/677 (99%) Query: 1 MQKNNDGLRPSSADIQNSASVEYFAASHAHYSSMATLAMGLAMAVILLGLVVLLASLLGE 60 MQKNNDGLRPSSADIQNSASVEYFAASHAHYSSMATLAMGLAMAVILLGLVVLLASLLGE Sbjct: 1 MQKNNDGLRPSSADIQNSASVEYFAASHAHYSSMATLAMGLAMAVILLGLVVLLASLLGE 60 Query: 61 EYRRLLSGLLEMREMTAVGLILGASALYLRCIHGGARRSGLRRVAAGLSWMLLALGLGTL 120 EYRRLLSGLLEMREMTAVGLILGASALYLRCIHGGARRSGLRRVAAGLSWMLLALGLGTL Sbjct: 61 EYRRLLSGLLEMREMTAVGLILGASALYLRCIHGGARRSGLRRVAAGLSWMLLALGLGTL 120 Query: 121 AHGLMYALGWLPIDQNHPLSHLVIPPLLSLGFVVMAAVLLLQDWRMLGGYYPAEYLSFAL 180 AHGLMYALGWLPIDQNHPLS LVIPPLLSLGFVVMAAVLLLQDWRMLGGYYPAEYLSFAL Sbjct: 121 AHGLMYALGWLPIDQNHPLSPLVIPPLLSLGFVVMAAVLLLQDWRMLGGYYPAEYLSFAL 180 Query: 181 IGLAAIPLVGYLYGVSQFVYLDFPLPVSLLSALVMALLATALLMARPAHPLMAIITRIAP 240 IGLAAIPLVGYLYGVSQFVYLDFPLPVSLLSALVMALLATALLMARPAHPLMAIITRIAP Sbjct: 181 IGLAAIPLVGYLYGVSQFVYLDFPLPVSLLSALVMALLATALLMARPAHPLMAIITRIAP 240 Query: 241 GGQMLRHLLPQTVFLLLAFSLLLNWGMTHGWILPELLLPTLTLINGVIVLFIFWGSASRL 300 GGQMLRHLLPQTVFLLLAFSLLLNWGMTHGWILPELLLPTLTLINGVIVLFIFWGSASRL Sbjct: 241 GGQMLRHLLPQTVFLLLAFSLLLNWGMTHGWILPELLLPTLTLINGVIVLFIFWGSASRL 300 Query: 301 DSEYGERTRNAQKLAETSALLNAVSESTSDPIFVKNRQGLMIFANPATLHKLGKTWEETM 360 DSEYGERTRNAQKLAETSALLNAVSESTSDPIFVKNRQGLMIFANPATLHKLGKTWEETM Sbjct: 301 DSEYGERTRNAQKLAETSALLNAVSESTSDPIFVKNRQGLMIFANPATLHKLGKTWEETM 360 Query: 361 YRSSRELFLVPEEADTIDRDDRRVMASGKPEKLEQTLHLPEGVVTFQTAKVPWFGKDGSV 420 YRSSRELFLVPEEADTIDRDDRRVMASGKPEKLEQTLHLPEGVVTFQTAKVPWFGKDGSV Sbjct: 361 YRSSRELFLVPEEADTIDRDDRRVMASGKPEKLEQTLHLPEGVVTFQTAKVPWFGKDGSV 420 Query: 421 QGVIGISTDITERKQAEDELRQRESQLEKTVIQRTALLRELTNHLETVREEEKRAIAREL 480 QGVIGISTDITERKQAEDELRQRESQLEKTVIQRTALLRELTNHLETVREEEKRAIAREL Sbjct: 421 QGVIGISTDITERKQAEDELRQRESQLEKTVIQRTALLRELTNHLETVREEEKRAIAREL 480 Query: 481 HDNMGASLTALSMHLEGVYQILPPDEKWADRKVRMQGLMKSLVATTRRIQTELRPNTLDL 540 HDNMGASLTALSMHLEGVYQILPPDEKWADRKVRMQGLMKSLVATTRRIQTELRPNTLDL Sbjct: 481 HDNMGASLTALSMHLEGVYQILPPDEKWADRKVRMQGLMKSLVATTRRIQTELRPNTLDL 540 Query: 541 FGLKAAISEQLDELHERTGIACHASLPDEDVEVGHEMEIAIYRMLQEMLNNVTKHAKASK 600 FGLKAAISEQLDELHERTGIACHASLPDEDVEVGHEMEIAIYRMLQEMLNNVTKHAKASK Sbjct: 541 FGLKAAISEQLDELHERTGIACHASLPDEDVEVGHEMEIAIYRMLQEMLNNVTKHAKASK 600 Query: 601 VDVILDIDEDHVALTVRDDGVGIPEERRDNHKTYGLRGLRERATFFGGEVDIRSTPGKGA 660 VDVILDIDEDHVALTVRDDGVGIPEERRDNHKTYGLRGLRERATFFGGEVDIRSTPGKGA Sbjct: 601 VDVILDIDEDHVALTVRDDGVGIPEERRDNHKTYGLRGLRERATFFGGEVDIRSTPGKGA 660 Query: 661 LITISLPIRPELVPSEA 677 LITISLPIRPELVPSEA Sbjct: 661 LITISLPIRPELVPSEA 677 >ref|YP_004754070.1| putative regulator; hypothetical protein [Collimonas fungivorans Ter331] gb|AEK63247.1| putative regulator; putative membrane protein [Collimonas fungivorans Ter331] Length = 737 Score = 625 bits (1611), Expect = e-177, Method: Compositional matrix adjust. Identities = 347/665 (52%), Positives = 458/665 (68%), Gaps = 7/665 (1%) Query: 10 PSSADIQNSASVEYFAASHAHYSSMATLAMGLAMAVILLGLVVLLASLLGEEYRRLLSGL 69 P ++ + ++E A + + S A+ ++ A++++ VVL+A + S L Sbjct: 63 PHYRELLKTRALESLATTRTYVSRTTIAAIVVSTALMIVSAVVLIACVCQVTLPFPTSQL 122 Query: 70 LEMREMTAVGLILGASALYLRCIHGGARRSGLRRVAAGLSWMLLALGLGTLAHGLMYALG 129 MR TA G +L A +L LRC+ +++ +R +A L+ +LL L + Sbjct: 123 PLMRANTAAGFLLAAGSLLLRCLTARPQQA-IRFIAQVLAVLLLLFAGAALWQEAFHNAA 181 Query: 130 WLPI--DQNHPLSHLVIP----PLLSLGFVVMAAVLLLQDWRMLGGYYPAEYLSFALIGL 183 WL I P L P P++++GF++ LLL D R + AEYL+ +LI L Sbjct: 182 WLEIFLAALAPQPGLHNPSGLHPMVAIGFILCGLALLLLDRRSKKESHLAEYLAISLIFL 241 Query: 184 AAIPLVGYLYGVSQFVYLDFPLPVSLLSALVMALLATALLMARPAHPLMAIITRIAPGGQ 243 +AIPL+GYLY V+ + + + LSA+ L ALLM+RP LMAIITR APGGQ Sbjct: 242 SAIPLLGYLYNVAAMTQMVYATSIPGLSAIAFLLFGIALLMSRPHRRLMAIITRHAPGGQ 301 Query: 244 MLRHLLPQTVFLLLAFSLLLNWGMTHGWILPELLLPTLTLINGVIVLFIFWGSASRLDSE 303 MLR LPQ + LL+A L +WG HG+ + P LTLI+GV+VLFIFW +A ++D E Sbjct: 302 MLRRSLPQMLVLLVALHWLADWGARHGFYDRTSVPPLLTLIDGVLVLFIFWRTAGKVDRE 361 Query: 304 YGERTRNAQKLAETSALLNAVSESTSDPIFVKNRQGLMIFANPATLHKLGKTWEETMYRS 363 YG R ++A +LAE +ALL AVS++T+DPIFVK+ QG +IFANPA L +LG TW+E +RS Sbjct: 362 YGARLQSAAELAEATALLIAVSDNTNDPIFVKDHQGRLIFANPAYLRQLGLTWQEAKHRS 421 Query: 364 SRELFLVPEEADTIDRDDRRVMASGKPEKLEQTLHLPEGVVTFQTAKVPWFGKDGSVQGV 423 S ELF E+A IDRDD R+M+ G E LEQT+ LP + TFQT K PWF + V GV Sbjct: 422 SGELFACEEDAVRIDRDDARIMSGGVSETLEQTVQLPGDIATFQTTKAPWFDQHRRVMGV 481 Query: 424 IGISTDITERKQAEDELRQRESQLEKTVIQRTALLRELTNHLETVREEEKRAIARELHDN 483 +GI+TDI+ERK+AED LRQRE +LE+T+ QRTALLREL NH+ET+REEEKRAIARELHDN Sbjct: 482 VGIATDISERKRAEDSLRQRELELERTIAQRTALLRELANHMETIREEEKRAIARELHDN 541 Query: 484 MGASLTALSMHLEGVYQILPPDEKWADRKVRMQGLMKSLVATTRRIQTELRPNTLDLFGL 543 MGASLTALSMHLEGVY+ILP +E W R+ +MQ L+ SLVATTRRIQ ELRPNTL+LFGL Sbjct: 542 MGASLTALSMHLEGVYKILPENEHWQQRQAQMQTLLSSLVATTRRIQVELRPNTLELFGL 601 Query: 544 KAAISEQLDELHERTGIACHASLPDEDVEVGHEMEIAIYRMLQEMLNNVTKHAKASKVDV 603 KAAI EQL++ RT I C +SLPDED+ V H++EIA+YRMLQE+LNNV+KHA+A++VD+ Sbjct: 602 KAAILEQLEDFGRRTEIVCKSSLPDEDITVDHKIEIAVYRMLQEILNNVSKHAQATQVDL 661 Query: 604 ILDIDEDHVALTVRDDGVGIPEERRDNHKTYGLRGLRERATFFGGEVDIRSTPGKGALIT 663 ILDIDED +ALTVRD+GVG+ ++R +N T+GLRGL ERAT+ GG+V GKG + Sbjct: 662 ILDIDEDRLALTVRDNGVGMSQQRFENTTTHGLRGLHERATYLGGKVRFGGGEGKGTTVV 721 Query: 664 ISLPI 668 I LP+ Sbjct: 722 IELPV 726 >ref|ZP_08272923.1| putative regulator; putative membrane protein [Oxalobacteraceae bacterium IMCC9480] gb|EGF33612.1| putative regulator; putative membrane protein [Oxalobacteraceae bacterium IMCC9480] Length = 667 Score = 565 bits (1456), Expect = e-159, Method: Compositional matrix adjust. Identities = 313/643 (48%), Positives = 423/643 (65%), Gaps = 27/643 (4%) Query: 37 LAMGLAMAVILLGLVVLLASLLGEEYRRLLSGLLEMREMTAVGLILGASALYLRCIHGGA 96 +A+G+A+AV L G VLL +R L L M A+GL+L L L+ Sbjct: 37 IALGIALAVALTGAGVLLL------WRLPLPHL--MPANVALGLLLAGITLALQS-QPLI 87 Query: 97 RRSGLRRVAAGLSWMLLALGLGTLAHGLMYALGWLPIDQ-----NHPLS---HLVIPPLL 148 R +R +A ++ ++ ALGL T+AHGL ++G +D PL+ + I P+ Sbjct: 88 RLLPVRLLALCIAALVAALGLVTVAHGL--SMGGADLDAFLAGLTLPLTGSPAMPIHPVS 145 Query: 149 SLGFVVMAAVLLLQDWRMLGGYYPAEYLSFALIGLAAIPLVGYLYGVSQFVYLDFPLPVS 208 + + LLLQD R + P E+++ +L L +PL G Y V L + V Sbjct: 146 AFALALSGIALLLQDMRTRARHAPTEFMALSLAALNLVPLAGLAYQVPALADLGNTIAVP 205 Query: 209 LLSALVMALLATALLMARPAHPLMAIITRIAPGGQMLRHLLPQTVFLLLAFSLLLNWGMT 268 +AL L +L+++P+ LMAIIT PGGQMLR LPQT+ +L+ LLNW ++ Sbjct: 206 AAAALAFFSLGAGMLLSQPSRSLMAIITDNVPGGQMLRRSLPQTLLVLV----LLNWIIS 261 Query: 269 HGWIL----PELLLPTLTLINGVIVLFIFWGSASRLDSEYGERTRNAQKLAETSALLNAV 324 G +L L+ P LTL+N ++L IFW +A+ ++ EY R ++A LA+ S+LL AV Sbjct: 262 RGALLELYGQALVSPILTLLNSSVILVIFWRTAATVNDEYRARLQSASDLAQASSLLIAV 321 Query: 325 SESTSDPIFVKNRQGLMIFANPATLHKLGKTWEETMYRSSRELFLVPEEADTIDRDDRRV 384 S++T DPIFVKNR G +IFANPA L LGK+ EE +YRSS EL P+EA +DRDD+ + Sbjct: 322 SDNTDDPIFVKNRDGKLIFANPAMLRSLGKSREEALYRSSSELLPDPDEAAQVDRDDQHI 381 Query: 385 MASGKPEKLEQTLHLPEGVVTFQTAKVPWFGKDGSVQGVIGISTDITERKQAEDELRQRE 444 M LEQTLHLP+G T+ + K PWF G + G+IGISTDI+ RK+ E +L+QRE Sbjct: 382 MQGRVSVTLEQTLHLPQGERTYSSTKAPWFDASGQLLGLIGISTDISTRKEMERQLKQRE 441 Query: 445 SQLEKTVIQRTALLRELTNHLETVREEEKRAIARELHDNMGASLTALSMHLEGVYQILPP 504 ++LE TV QRTA+LR+L +HLE+VREEEKR+IARELHD+MGASLT+L+MHL+ +Y+ LP Sbjct: 442 AELEATVSQRTAVLRKLGDHLESVREEEKRSIARELHDDMGASLTSLNMHLDSIYKALPD 501 Query: 505 DEKWADRKVRMQGLMKSLVATTRRIQTELRPNTLDLFGLKAAISEQLDELHERTGIACHA 564 + KWAD+ R++ L+ SLVATTRRIQ LRP LDLFGLKA I EQL+E +RTGI C Sbjct: 502 EPKWADKATRVRTLVASLVATTRRIQIGLRPIMLDLFGLKAGIIEQLEEFEQRTGITCKT 561 Query: 565 SLPDEDVEVGHEMEIAIYRMLQEMLNNVTKHAKASKVDVILDIDEDHVALTVRDDGVGIP 624 SLPD++V + H++EI +YRMLQE LNNV KHA+A+KVDVILD+DED LTVRDDG+GIP Sbjct: 562 SLPDDEVALAHKLEITLYRMLQEALNNVAKHAQATKVDVILDVDEDQAVLTVRDDGIGIP 621 Query: 625 EERRDNHKTYGLRGLRERATFFGGEVDIRSTPGKGALITISLP 667 ER +N TYG+RGL ERA+F GG + + P +G + I+LP Sbjct: 622 SERINNQSTYGIRGLSERASFLGGTASVFANPVRGTTVRITLP 664 >ref|YP_001354301.1| signal transduction histidine kinase [Janthinobacterium sp. Marseille] gb|ABR90525.1| signal transduction histidine kinase [Janthinobacterium sp. Marseille] Length = 678 Score = 446 bits (1146), Expect = e-123, Method: Compositional matrix adjust. Identities = 256/634 (40%), Positives = 385/634 (60%), Gaps = 13/634 (2%) Query: 43 MAVILLGLVVLLASLLGEEYRRLLSGLLEMREMTAVGLILGASALYLRCIHGGARRSG-- 100 + V +L +V + L YR L L+ + TA+ +L AL LR R+ Sbjct: 25 VGVGMLAMVNVRQDLWVLNYR--LFDLVPILANTALAFVLAGLALALRSFKVSTPRAQTV 82 Query: 101 LRRVAAGLSWMLLALGLGTLAHGLMYALG-----WLP-IDQNHPLSHLV-IPPLLSLGFV 153 A +S + LGL TL M+ + +P + N ++L + PL +LGF Sbjct: 83 FAVTAVIVSLCVALLGLSTLLQ-FMFGVNVGIERLIPALATNEYKAYLERMAPLPALGFT 141 Query: 154 VMAAVLLLQDWRMLGGYYPAEYLSFALIGLAAIPLVGYLYGVSQFVYLDFPLPVSLLSAL 213 + LLL D+R +YP+EY +F L G+ IPL+G+LY V L+ V+ ++ Sbjct: 142 LAGLSLLLLDYRTARDHYPSEYGAFVLAGVMGIPLIGHLYNVMSVDELNAAHTVTPFISI 201 Query: 214 VMALLATALLMARPAHPLMAIITRIAPGGQMLRHLLPQTVFLLLAFSLLLNWGMTHGWIL 273 + +LA +L ARP H LM++ +PGG +LR LLP ++ LL+ + WG+ + + Sbjct: 202 IFFILALGILSARPEHRLMSLWNSTSPGGPLLRRLLPNSLILLVILDFAIKWGVQNRFYD 261 Query: 274 PELLLPTLTLINGVIVLFIFWGSASRLDSEYGERTRNAQKLAETSALLNAVSESTSDPIF 333 + P L L++ ++ +F +A+ L+ EY R + LAE++ALL AVS++T D IF Sbjct: 262 ADKASPLLILLSSSLLFIMFCRTAALLNREYEGRQQGEAALAESNALLRAVSDNTPDAIF 321 Query: 334 VKNRQGLMIFANPATLHKLGKTWEETMYRSSRELFLVPEEADTIDRDDRRVMASGKPEKL 393 VK+ G M+FANPA L LGK EE + S +L+ + E+A+ + +D+ V+ G P+ Sbjct: 322 VKDNTGRMVFANPAKLRLLGKQREEVIGFRSIDLYPLKEDAEKVKLEDQSVLDGGVPKVF 381 Query: 394 EQTLHLPEGVVTFQTAKVPWFGKDGSVQGVIGISTDITERKQAEDELRQRESQLEKTVIQ 453 E T+ GV T + K PW +G + G++GISTDITERK+ ED L+ E+QLE V Sbjct: 382 ETTIRFASGVHTMHSTKAPWLNANGQIMGLVGISTDITERKRMEDSLKAHETQLEALVAA 441 Query: 454 RTALLRELTNHLETVREEEKRAIARELHDNMGASLTALSMHLEGVYQILPPDEKWADRKV 513 RT + EL HLET REEEKR+IARELHD++G++LTAL+MHL ++Q +PP+ K+ +R + Sbjct: 442 RTFEVSELIGHLETTREEEKRSIARELHDDLGSALTALNMHLSLLFQQMPPEPKFTERSL 501 Query: 514 RMQGLMKSLVATTRRIQTELRPNTLDLFGLKAAISEQLDELHERTGIACHASLPDEDVEV 573 +++ L+ S+ TRRIQ LRP+ LD+FG+K AI+EQ E + TG+ C+ASLPD+ + Sbjct: 502 KIKALLSSITDATRRIQNGLRPDKLDVFGVKVAIAEQAAEFEKYTGVTCNASLPDDRLIY 561 Query: 574 GHEMEIAIYRMLQEMLNNVTKHAKASKVDVILDIDEDHVALTVRDDGVGIPEERRDNHKT 633 ++IA++RM+QE LNN+ KHA+A+ VDV+LD ED + LT+RD+GVG+P + T Sbjct: 562 APRVDIALFRMVQESLNNIAKHAQATHVDVVLDDTEDEILLTIRDNGVGMPTA-QSGVMT 620 Query: 634 YGLRGLRERATFFGGEVDIRSTPGKGALITISLP 667 +GLRG+RERA + GG V + S G+G I IS+P Sbjct: 621 HGLRGMRERAGYLGGSVQVTSVVGRGTTIAISIP 654 >ref|YP_001100769.1| putative regulator protein [Herminiimonas arsenicoxydans] emb|CAL62648.1| Putative signal transduction histidine kinase [Herminiimonas arsenicoxydans] Length = 700 Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust. Identities = 263/623 (42%), Positives = 378/623 (60%), Gaps = 20/623 (3%) Query: 61 EYRRLLSGLLEMREMTAVGLILGASALYLRCIH--GGARRSGLRRVA---------AGLS 109 YR L LL +R + I+ AL LR +H G R+ + +A AG+S Sbjct: 72 NYR--LQDLLPIRTPVGIIFIVTGCALALRSLHMERGIARTMITVLASALALLVAWAGVS 129 Query: 110 WML-LALGLGTLAHGLMYALGWLPIDQNHPLSHLVIPPLLSLGFVVMAAVLLLQDWRMLG 168 +L G+ L +GW D S + PL + GF + LLL D+R G Sbjct: 130 ALLRYFFGIDAGLEYLFVKMGW--ADN----SWIKQAPLTAFGFALAGTGLLLLDYRTSG 183 Query: 169 GYYPAEYLSFALIGLAAIPLVGYLYGVSQFVYLDFPLPVSLLSALVMALLATALLMARPA 228 G+YP+EY++F L+G+ IPL+G+LY V D + ++ +LA +L ARP Sbjct: 184 GHYPSEYVAFTLVGVMGIPLIGHLYNVMAVDVADAARAMLPFISVTFLILALGMLSARPM 243 Query: 229 HPLMAIITRIAPGGQMLRHLLPQTVFLLLAFSLLLNWGMTHGWILPELLLPTLTLINGVI 288 H LM + +PGG +LR LLP ++ LL+ + WG+ H + + P L L++G++ Sbjct: 244 HRLMKLWNSTSPGGPILRRLLPNSLLLLVFLDFAIKWGVRHHFYDQDKASPLLILLSGMV 303 Query: 289 VLFIFWGSASRLDSEYGERTRNAQKLAETSALLNAVSESTSDPIFVKNRQGLMIFANPAT 348 + +F +A+ L+ EY +R LAE++ALL AVS++T D IFVK+R G MIFANPA Sbjct: 304 LFIMFCRTAALLNREYEDRQIGEAALAESNALLRAVSDNTPDAIFVKDRSGRMIFANPAK 363 Query: 349 LHKLGKTWEETMYRSSRELFLVPEEADTIDRDDRRVMASGKPEKLEQTLHLPEGVVTFQT 408 L LGK EE + S EL+L ++A+ + +DR V+ SG+P E T GV T + Sbjct: 364 LRLLGKEREEVIGLRSEELYLEMQDAERVIIEDRSVIESGEPRTFETTTKYVHGVRTMHS 423 Query: 409 AKVPWFGKDGSVQGVIGISTDITERKQAEDELRQRESQLEKTVIQRTALLRELTNHLETV 468 K PW +G + G++GISTDITERK+ ED L+ E+QLE V RT + EL HLET Sbjct: 424 TKAPWLDANGRLMGLVGISTDITERKRMEDALKAHETQLEALVAARTMEVSELIGHLETT 483 Query: 469 REEEKRAIARELHDNMGASLTALSMHLEGVYQILPPDEKWADRKVRMQGLMKSLVATTRR 528 REEEKRAIARELHD++GA+LTAL+MHL ++Q +P + K+ +R V+++ L+ S+ TRR Sbjct: 484 REEEKRAIARELHDDLGAALTALNMHLSLIFQQMPAEPKFTERSVKIKALLSSITDATRR 543 Query: 529 IQTELRPNTLDLFGLKAAISEQLDELHERTGIACHASLPDEDVEVGHEMEIAIYRMLQEM 588 IQ LRP+ LD+FG+K AI+EQ E + TG+ C+ +LPD+ + ++IA++R++QE Sbjct: 544 IQNGLRPDKLDVFGIKIAIAEQAAEFEKYTGVVCNVNLPDDQLTYAARVDIALFRIVQEA 603 Query: 589 LNNVTKHAKASKVDVILDIDEDHVALTVRDDGVGIPEERRDNHKTYGLRGLRERATFFGG 648 LNN+ KHAKAS VDV+LD +D + LTVRD+G+GIP R +N T+GLRG+RER + GG Sbjct: 604 LNNIAKHAKASHVDVVLDDTDDEIVLTVRDNGIGIPLSRPNNMITHGLRGMRERVAYLGG 663 Query: 649 EVDIRSTPGKGALITISLPIRPE 671 V I GKG I +++P E Sbjct: 664 TVRIGGAEGKGTTIVVTIPKTAE 686 >ref|YP_003798713.1| putative sensor histidine kinase [Candidatus Nitrospira defluvii] emb|CBK42788.1| putative Sensor histidine kinase [Candidatus Nitrospira defluvii] Length = 1051 Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 124/360 (34%), Positives = 188/360 (52%), Gaps = 32/360 (8%) Query: 324 VSESTSDPIFVKNRQGLMIFANPATLHKLGKTWEETMYRSSRELFLVPEEADTIDRDDRR 383 V S + I+ +R G + F NPA WE + L P A D Sbjct: 707 VLNSAGEGIYGIDRDGRLTFVNPAAAKMF--DWE------AEALIGQPFSALVHRPDFHE 758 Query: 384 VMASGKPEKLEQTLHLPEGVVTFQTAKVPWFGKDGSVQGVIGISTDITER---------- 433 ++S +P + +T+ +G + A ++ KDG+ V +ST I ER Sbjct: 759 GVSSERPSPIVETI---QGGEIREEADSRFWRKDGTSFPVEYVSTPIRERGDIVGAVVVF 815 Query: 434 KQAEDELRQRESQLEKTVIQRTALLRELTNHLETVREEEKRAIARELHDNMGASLTALSM 493 K D R E+QL+ ++ + LR+L+ +E +REEE+ IARELHD +G LT L + Sbjct: 816 KDTTDRKRA-EAQLQDSLRR----LRKLSGRMEGIREEERGRIARELHDELGVGLTCLKI 870 Query: 494 HLEGV-----YQILPPDEKWADRKVR-MQGLMKSLVATTRRIQTELRPNTLDLFGLKAAI 547 L + +++P D D K+R M+ + S + + +RI ELRP LD GL AAI Sbjct: 871 DLSRLGGLLGERMVPRDRAKVDEKIRGMKEQVDSTITSVQRIVAELRPGVLDDLGLVAAI 930 Query: 548 SEQLDELHERTGIACHASLPDEDVEVGHEMEIAIYRMLQEMLNNVTKHAKASKVDVILDI 607 Q + RTG+ACH ++ ED+ V E A++R+ QE L NVT+HA+A++V V L+ Sbjct: 931 EWQCRDFQRRTGVACHCTVSHEDLRVDPEHATAVFRICQEALTNVTRHAQATEVHVCLED 990 Query: 608 DEDHVALTVRDDGVGIPEERRDNHKTYGLRGLRERATFFGGEVDIRSTPGKGALITISLP 667 + + L V D+G GIP +R + +++GL G+RERA GG+V I + G G I + LP Sbjct: 991 QGEGLLLQVSDNGRGIPSDRLADARSFGLLGMRERAGLLGGDVQIETKEGSGTTIVLQLP 1050 >ref|YP_001354607.1| Signal transduction histidine kinase [Janthinobacterium sp. Marseille] gb|ABR90018.1| Signal transduction histidine kinase [Janthinobacterium sp. Marseille] Length = 354 Score = 177 bits (449), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 122/357 (34%), Positives = 189/357 (52%), Gaps = 17/357 (4%) Query: 314 LAETSALLNAVSESTSDPIFVKNRQGLMIFANPATLHKLGKTWEETMYRSSRELFLVPEE 373 +++ L A+ + D ++K++ I N A + E ++++ E++ PEE Sbjct: 1 MSKDDELQKAILNNIPDQAWLKDKDSRYILVNEAFIAACRLPESEILHKTPAEVW--PEE 58 Query: 374 ADTIDRD-DRRVMASGKPEKLEQTLHLPEGVVT-FQTAKVPWFGKDGSVQGVIGISTDIT 431 + D D+RVM G+ + E+ H +G + + T K P + G V G GIS DIT Sbjct: 59 WGNVYIDTDKRVMEQGERLRYEEWRHTEDGTLRWYDTIKTPIRNEQGEVIGTTGISRDIT 118 Query: 432 ERKQAEDELRQRESQLEKTVIQRTALLRELTNHLETVREEEKRAIARELHDNMGASLTAL 491 +RK AE EL +QL REL+ +L+ VREEE+ I+RELHD +G SLTA+ Sbjct: 119 DRKMAEQELLASRTQL-----------RELSAYLQVVREEERTRISRELHDELGQSLTAI 167 Query: 492 SMHLEGV-YQILPPDEKWADRKVRMQGLMKSLVATTRRIQTELRPNTLDLFGLKAAISEQ 550 + L + Q D++W ++ + S V + +RI +LRP LD GL A+ Sbjct: 168 RIGLSVIETQHEMHDDEWLKSVSGLKKIADSTVESVQRIAADLRPLILDELGLLPAMDWL 227 Query: 551 LDELHERTGIACHASLPDEDVEVGHEMEIAIYRMLQEMLNNVTKHAKASKVDVILDIDED 610 L+ ER+ IA SLP + E AI+R+LQE L NV++H++A+ V V L +D Sbjct: 228 LESFSERSAIAYELSLPSTPLAFSREASTAIFRILQESLTNVSRHSQATLVGVALKETKD 287 Query: 611 HVALTVRDDGVGIPEERRDNHKTYGLRGLRERATFFGGEVDIRSTPGKGALITISLP 667 + L + D+G GI + H + GL G+RERA GG++ I+S G G I + +P Sbjct: 288 FITLKITDNGKGI-DSSVSRHDSLGLLGMRERAFMLGGKLKIQSRAGSGTSIEVRIP 343 >ref|YP_460835.1| signal transduction histidine kinase [Syntrophus aciditrophicus SB] gb|ABC76667.1| signal transduction histidine kinase [Syntrophus aciditrophicus SB] Length = 519 Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 123/375 (32%), Positives = 197/375 (52%), Gaps = 16/375 (4%) Query: 295 GSASRLDSEYGERTRNAQKLAETSALLNAVSESTSDPIFVKNRQGLMIFANPATLHKLGK 354 G++ + + R R + A S++L+A+ + + + NR+ IFAN A G Sbjct: 156 GNSMNITGQKEARNRLEELEALESSILDAIPHAV---VGLHNRR--FIFANNAVQDVFGW 210 Query: 355 TWEETMYRSSRELFLVPEEADTIDRDDRRVMASGKPEKLEQTLHLPEGVVTFQTAKVPWF 414 EE + RS R ++ + D I R + + E +G + Sbjct: 211 LPEELIGRSVRLIYRNDADHDEIARRFYDSLEKQRTYSTEFPCRHKDGHEIICLMRASRI 270 Query: 415 GKDGSVQGVIGISTDITERKQAEDELRQRESQLEKTVIQRTALLRELTNHLETVREEEKR 474 G+ + + ++ DITERK+AE EL E EK +R L+ HL++VREEE+ Sbjct: 271 GERLTERRIVVTYEDITERKKAEKEL---EESREK--------MRNLSIHLQSVREEERT 319 Query: 475 AIARELHDNMGASLTALSMHLEGVYQILPPDEKWADRKVRMQGLMKSLVATTRRIQTELR 534 IARE+HD +G SLTA M L + + + ++ D+ M GL+ + + RI +LR Sbjct: 320 RIAREIHDELGQSLTAFKMDLSWLGKRMTSEKLLHDKIKAMSGLVDRTIESVHRISADLR 379 Query: 535 PNTLDLFGLKAAISEQLDELHERTGIACHASLPDEDVEVGHEMEIAIYRMLQEMLNNVTK 594 P LD GL AA+ Q E R+GIAC A L EDV + E A++R+ QE L NV + Sbjct: 380 PGLLDDLGLVAAMEWQAKEFSARSGIACEADLEAEDVPLDKEPATAVFRIFQETLTNVAR 439 Query: 595 HAKASKVDVILDIDEDHVALTVRDDGVGIPEERRDNHKTYGLRGLRERATFFGGEVDIRS 654 H+ A+KV V L+ D V L V D+G GI +++ ++ K++G+ G+RERA +GG+V + Sbjct: 440 HSNATKVFVRLETKGDKVILEVTDNGRGITQKQINDPKSFGIMGMRERALLWGGDVQVIG 499 Query: 655 TPGKGALITISLPIR 669 + +G + +S+P++ Sbjct: 500 SRSRGTTVKVSIPLK 514 >ref|YP_002287632.1| signal transduction histidine kinase containing PAS/PAC sensor domain [Oligotropha carboxidovorans OM5] ref|YP_004634238.1| signal transduction histidine kinase with PAS/PAC sensor domain [Oligotropha carboxidovorans OM5] gb|ACI91767.1| signal transduction histidine kinase containing PAS/PAC sensor domain [Oligotropha carboxidovorans OM5] gb|AEI04367.1| signal transduction histidine kinase with PAS/PAC sensor domain [Oligotropha carboxidovorans OM4] gb|AEI07997.1| signal transduction histidine kinase with PAS/PAC sensor domain [Oligotropha carboxidovorans OM5] Length = 358 Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 124/359 (34%), Positives = 192/359 (53%), Gaps = 14/359 (3%) Query: 313 KLAETSALLNAVSESTSDPIFVKNRQGLMIFANPATLHKLGKTWEETMYRSSRELFLVPE 372 K +T A+ ++ D ++K+R + N A L LG + ++ + + E++ PE Sbjct: 2 KSLDTQQQQRALLDNIPDMAWLKDRDCRYLAVNTAYLRVLGLSEKDVLGKMPSEIW-PPE 60 Query: 373 EADTIDRDDRRVMASGKPEKLEQTLHLPEGVVT-FQTAKVPWFGKDGSVQGVIGISTDIT 431 A+ R DR V+ SG+ + E++ P+G F+T K P + G + G +GIS DI+ Sbjct: 61 IAEVYLRTDRAVLKSGRRRRYEESRRGPDGEPRWFETIKSPIRDESGHIIGTVGISRDIS 120 Query: 432 ERKQAEDELRQRESQLEKTVIQRTALLRELTNHLETVREEEKRAIARELHDNMGASLTAL 491 ERK AEDEL V RT L R L+++L+TVREEE+ IARELHD +G +LTA+ Sbjct: 121 ERKAAEDEL----------VASRTQL-RALSHYLQTVREEERAHIARELHDELGQTLTAM 169 Query: 492 SMHLEGVYQILPPDEKWADRKV-RMQGLMKSLVATTRRIQTELRPNTLDLFGLKAAISEQ 550 M L + + L D +V R+ GL V +RI ++LRP LD GL +A+ Sbjct: 170 KMDLVWLRERLSADNGALKPRVERLVGLADRSVTDLQRIASDLRPLMLDELGLVSAVHWL 229 Query: 551 LDELHERTGIACHASLPDEDVEVGHEMEIAIYRMLQEMLNNVTKHAKASKVDVILDIDED 610 D + ++ + + S ED+ G E+ A +R++QE L N+ +H+ A V + ED Sbjct: 230 TDTVAGQSNLNINLSFDREDLTYGPEVSTAAFRIVQEALTNIVRHSGARHVTITACHAED 289 Query: 611 HVALTVRDDGVGIPEERRDNHKTYGLRGLRERATFFGGEVDIRSTPGKGALITISLPIR 669 + + + DDG G+P +GL G+ ERA GG V + S PG G + SLP++ Sbjct: 290 ELHIEIVDDGCGLPPTAASPRLHHGLLGMHERANMLGGSVAVESAPGGGTRVRASLPLK 348 >ref|YP_725295.1| signal transduction histidine kinase [Ralstonia eutropha H16] emb|CAJ91927.1| signal transduction histidine kinase containing PAS/PAC sensor domain [Ralstonia eutropha H16] Length = 355 Score = 174 bits (442), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 121/352 (34%), Positives = 186/352 (52%), Gaps = 18/352 (5%) Query: 320 LLNAVSESTSDPIFVKNRQGLMIFANPATLHKLGKTWEETMYRSSRELFLVPEEADTIDR 379 L A+ + D ++K+ + N A + G++ E + + +++ EE + Sbjct: 7 LQRAILNNIPDQAWLKDVGSRYVLVNDAFMAACGRSEAEILGSTPDKVW--SEEWGQVYL 64 Query: 380 D-DRRVMASGKPEKLEQTLHLPEGVVT-FQTAKVPWFGKDGSVQGVIGISTDITERKQAE 437 D D+ V+ASG + E+ H +G + F T K+P G+DG+V G +GIS DIT+RK++E Sbjct: 65 DTDKAVVASGIRRRYEECRHGQDGSLRWFDTIKMPIRGQDGAVVGTVGISRDITDRKRSE 124 Query: 438 DELRQRESQLEKTVIQRTALLRELTNHLETVREEEKRAIARELHDNMGASLTALSMHLEG 497 EL ++ A LREL+ +L++VRE E+ I+RELHD +G SLTAL + L Sbjct: 125 QEL-----------LESRAQLRELSAYLQSVREAERTRISRELHDELGQSLTALRLGLSF 173 Query: 498 VYQILPPDEKWADRK--VRMQGLMKSLVATTRRIQTELRPNTLDLFGLKAAISEQLDELH 555 + PD A RK ++ + S V +RI +LRP LD GL AAI + Sbjct: 174 IEAQQGPDAGDACRKHLQMLKQIADSTVDAVQRIAADLRPPLLDELGLTAAIEWLAESFS 233 Query: 556 ERTGIACHASLPDEDVEVGHEMEIAIYRMLQEMLNNVTKHAKASKVDVILDIDEDHVALT 615 ER GIAC +L E+ E+ A++R+ QE L N +H +A +V V L + L Sbjct: 234 ERGGIACELALQPVG-ELSAELSTAVFRIAQEALTNACRHGRADRVRVELSAAGGTLRLV 292 Query: 616 VRDDGVGIPEERRDNHKTYGLRGLRERATFFGGEVDIRSTPGKGALITISLP 667 V D+G GI R + ++ GL G+RERA GG++ + S G G + +P Sbjct: 293 VADNGRGIDASRAGHRRSLGLLGMRERALMLGGKLAVTSEKGGGTRVEAQIP 344