BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0294.p (204 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774655.1| response regulator protein [Herbaspirillum s... 396 e-108 ref|YP_982912.1| two component LuxR family transcriptional regul... 187 7e-46 gb|AAK94468.1| response regulator CorR [Pseudomonas syringae pv.... 164 5e-39 ref|ZP_06460775.1| DNA-binding response regulator CorR [Pseudomo... 162 2e-38 ref|NP_794449.1| DNA-binding response regulator CorR [Pseudomona... 153 1e-35 ref|YP_001766580.1| two component LuxR family transcriptional re... 152 4e-35 gb|AAA87562.2| response regulator protein CorR [Pseudomonas syri... 151 6e-35 ref|YP_980351.1| two component LuxR family transcriptional regul... 141 6e-32 ref|ZP_06482562.1| DNA-binding response regulator CorR [Pseudomo... 130 1e-28 ref|YP_586985.1| LuxR family transcriptional regulator [Cupriavi... 130 1e-28 >ref|YP_003774655.1| response regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62747.1| response regulator protein [Herbaspirillum seropedicae SmR1] Length = 204 Score = 396 bits (1017), Expect = e-108, Method: Compositional matrix adjust. Identities = 200/204 (98%), Positives = 200/204 (98%) Query: 1 MSTPHLLIIDDHALFRSGLRLVLQNSLPQARLSEAASLEEALHLQGDEEDAPTLLLIDIQ 60 MSTPHLLIIDDHALFRSGLRLVLQNSLPQARLSEAASLEEALHLQGDEEDAPTLLLIDIQ Sbjct: 1 MSTPHLLIIDDHALFRSGLRLVLQNSLPQARLSEAASLEEALHLQGDEEDAPTLLLIDIQ 60 Query: 61 LGGLNGIDGMAVLARRWPGVPAIILSADDTDHTVRQALQRGASAFVSKAATAEHIMAVIA 120 LGGLNGIDGMAVLARRWPGVPAIILSADDTDHTVRQALQRGASAFVSKAATAEHIMAVIA Sbjct: 61 LGGLNGIDGMAVLARRWPGVPAIILSADDTDHTVRQALQRGASAFVSKAATAEHIMAVIA 120 Query: 121 KVGAGLTPCPNQRGDQPDDKAQFTPRQYEVLGLLSQGLTNKAIGRRLNLSENTIRGHVQA 180 KVG GLTPC N RGDQPDDKAQFTPRQYEVLGLLSQGLTNKAIGRRLNLSENTIRGHVQA Sbjct: 121 KVGGGLTPCQNLRGDQPDDKAQFTPRQYEVLGLLSQGLTNKAIGRRLNLSENTIRGHVQA 180 Query: 181 ILLALDVDNRAEAAFAARRGGLVS 204 ILLALDVDNRAEAAFAARR GLVS Sbjct: 181 ILLALDVDNRAEAAFAARRRGLVS 204 >ref|YP_982912.1| two component LuxR family transcriptional regulator [Polaromonas naphthalenivorans CJ2] gb|ABM37991.1| two component transcriptional regulator, LuxR family [Polaromonas naphthalenivorans CJ2] Length = 224 Score = 187 bits (476), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 102/208 (49%), Positives = 136/208 (65%), Gaps = 8/208 (3%) Query: 1 MSTPHLLIIDDHALFRSGLRLVLQNSLPQARLSEAASLEEALHLQGDEEDAPTLLLIDIQ 60 M +L+IDDHALFRSG+RLVL + + EAASLE+A+ P L+L+DIQ Sbjct: 19 MPPTSILLIDDHALFRSGMRLVLLAGMANVEVLEAASLEQAVR---TVTSPPALVLLDIQ 75 Query: 61 LGGLNGIDGMAVLARRWPGVPAIILSADDTDHTVRQALQRGASAFVSKAATAEHIMAVIA 120 L G+NG++G+ + +RWPGVP ++LS+ T+R AL RGA+AFVSKA TAE I+ VI Sbjct: 76 LQGVNGLEGLGLFKQRWPGVPLVMLSSAAEPETIRLALSRGAAAFVSKADTAEKIIKVIE 135 Query: 121 KVGAGLTP-----CPNQRGDQPDDKAQFTPRQYEVLGLLSQGLTNKAIGRRLNLSENTIR 175 +V +G P + + + TPRQ EVL LL +GL+NK I RRL LSE T+R Sbjct: 136 QVLSGGLPDASAGMAHNTSANATPRPRLTPRQCEVLDLLCEGLSNKVIARRLELSEFTVR 195 Query: 176 GHVQAILLALDVDNRAEAAFAARRGGLV 203 GHVQA+L L V +R++ FAARR GL+ Sbjct: 196 GHVQAVLGLLGVSSRSQVMFAARRSGLI 223 >gb|AAK94468.1| response regulator CorR [Pseudomonas syringae pv. actinidiae] gb|EFW77575.1| DNA-binding response regulator CorR [Pseudomonas syringae pv. glycinea str. B076] Length = 198 Score = 164 bits (416), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 96/203 (47%), Positives = 127/203 (62%), Gaps = 6/203 (2%) Query: 1 MSTPHLLIIDDHALFRSGLRLVLQNSLPQARLSEAASLEEALHLQGDEEDAPTLLLIDIQ 60 M + +L+IDDHALFRS + L+L+ LP+ +SEA+ +E+AL AP L+L+D+Q Sbjct: 1 MPSSSILLIDDHALFRSSVALMLEMRLPRTTVSEASRIEQAL---AQALPAPDLILLDVQ 57 Query: 61 LGGLNGIDGMAVLARRWPGVPAIILSADDTDHTVRQALQRGASAFVSKAATAEHIMAVIA 120 L NG++G+A+L RWP +I+SA D D VR+A+QRGA F SKA EH++ I Sbjct: 58 LESTNGLEGIALLQERWPLARVVIVSAFDRDAIVREAIQRGAVEFHSKAECPEHLLQRIQ 117 Query: 121 KVGAGLTPCPNQRGDQPDDKAQFTPRQYEVLGLLSQGLTNKAIGRRLNLSENTIRGHVQA 180 + +G P P P T RQ +VLGLL +GLTNK I +L SE+T+R HVQA Sbjct: 118 ALLSGEPPEPRTIAATP---LPLTSRQRQVLGLLCRGLTNKEIALQLWRSEHTVRSHVQA 174 Query: 181 ILLALDVDNRAEAAFAARRGGLV 203 IL L R EAA AARR GLV Sbjct: 175 ILTILQTSCRTEAADAARRLGLV 197 >ref|ZP_06460775.1| DNA-binding response regulator CorR [Pseudomonas syringae pv. aesculi str. NCPPB3681] Length = 198 Score = 162 bits (411), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 96/203 (47%), Positives = 126/203 (62%), Gaps = 6/203 (2%) Query: 1 MSTPHLLIIDDHALFRSGLRLVLQNSLPQARLSEAASLEEALHLQGDEEDAPTLLLIDIQ 60 M + L+IDDHALFRS + L+L+ LP+ +SEA+ +E+AL AP L+L+D+Q Sbjct: 1 MPSSSSLLIDDHALFRSSVALMLEMRLPRTTVSEASRIEQAL---AQALPAPDLILLDVQ 57 Query: 61 LGGLNGIDGMAVLARRWPGVPAIILSADDTDHTVRQALQRGASAFVSKAATAEHIMAVIA 120 L NG++G+A+L RWP +I+SA D D VR+A+QRGA F SKA EH++ I Sbjct: 58 LESTNGLEGIALLQERWPLARVVIVSAFDRDAIVREAIQRGAVEFHSKAECPEHLLQRIQ 117 Query: 121 KVGAGLTPCPNQRGDQPDDKAQFTPRQYEVLGLLSQGLTNKAIGRRLNLSENTIRGHVQA 180 + +G P P P T RQ +VLGLL +GLTNK I +L SE+T+R HVQA Sbjct: 118 ALLSGEPPEPRTIAATP---LPLTSRQRQVLGLLCRGLTNKEIALQLWRSEHTVRSHVQA 174 Query: 181 ILLALDVDNRAEAAFAARRGGLV 203 IL L R EAA AARR GLV Sbjct: 175 ILTILQTSCRTEAADAARRLGLV 197 >ref|NP_794449.1| DNA-binding response regulator CorR [Pseudomonas syringae pv. tomato str. DC3000] gb|AAO58144.1| DNA-binding response regulator CorR [Pseudomonas syringae pv. tomato str. DC3000] Length = 199 Score = 153 bits (387), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 93/204 (45%), Positives = 122/204 (59%), Gaps = 7/204 (3%) Query: 1 MSTPHLLIIDDHALFRSGLRLVLQNSLPQ-ARLSEAASLEEALHLQGDEEDAPTLLLIDI 59 M + +L+IDDH LFRS + L+L+ LP +SEA+ +E+AL AP L+L+D+ Sbjct: 1 MPSSSILLIDDHVLFRSSVALMLEIRLPVGTTVSEASRIEQAL---AQALPAPDLILLDL 57 Query: 60 QLGGLNGIDGMAVLARRWPGVPAIILSADDTDHTVRQALQRGASAFVSKAATAEHIMAVI 119 QL NG++G+A+L RWP +I+SA D D V +A+QRGA F SK EH++ I Sbjct: 58 QLESANGLEGIALLQERWPLARVVIVSAFDRDAIVCEAIQRGAVEFHSKTECPEHLLQRI 117 Query: 120 AKVGAGLTPCPNQRGDQPDDKAQFTPRQYEVLGLLSQGLTNKAIGRRLNLSENTIRGHVQ 179 + +G P P P T RQ +VLGLL QGLTNK I +L SE+T+R HVQ Sbjct: 118 QALLSGEPPEPRTIASTP---LTLTSRQRQVLGLLCQGLTNKEIASQLWRSEHTVRSHVQ 174 Query: 180 AILLALDVDNRAEAAFAARRGGLV 203 AIL L R EAA ARR GLV Sbjct: 175 AILTILQASCRTEAADTARRLGLV 198 >ref|YP_001766580.1| two component LuxR family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gb|ACB27778.1| two component transcriptional regulator, LuxR family [Methylobacterium radiotolerans JCM 2831] Length = 198 Score = 152 bits (383), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 91/211 (43%), Positives = 126/211 (59%), Gaps = 22/211 (10%) Query: 1 MSTPHLLIIDDHALFRSGLRLVLQNSLPQARLSEAASLEEALHLQGDEEDAPTLLLIDIQ 60 M+ +LIIDDHALFRSG+ +L + + + ++ASL EAL + PT++L+DIQ Sbjct: 1 MAQEAILIIDDHALFRSGIVSMLSTAFDEIPVLDSASLHEALAIVAV---VPTIVLLDIQ 57 Query: 61 LGGLNGIDGMAVLARRWPGVPAIILSADDTDHTVRQALQRGASAFVSKAATAEHIMAVI- 119 L G++G++GM +L +RWP +++S D TV AL GA AF+SKA + +M V+ Sbjct: 58 LPGISGLEGMGLLQQRWPAARIVVVSGLDLPDTVSTALAHGACAFLSKADRPDRMMTVLR 117 Query: 120 -------AKVGAGLTPCPNQRGDQPDDKAQFTPRQYEVLGLLSQGLTNKAIGRRLNLSEN 172 A AG CP TPRQ EVL L+ +GL+NK IGR L LSE+ Sbjct: 118 EMLARSSAAPRAGAALCPT-----------LTPRQAEVLTLVGRGLSNKMIGRSLGLSEH 166 Query: 173 TIRGHVQAILLALDVDNRAEAAFAARRGGLV 203 T+RGHVQ +L L V RAEA F A++ GL+ Sbjct: 167 TVRGHVQGLLSVLGVTRRAEAVFKAQQLGLI 197 >gb|AAA87562.2| response regulator protein CorR [Pseudomonas syringae pv. glycinea] Length = 197 Score = 151 bits (381), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 91/203 (44%), Positives = 122/203 (60%), Gaps = 7/203 (3%) Query: 1 MSTPHLLIIDDHALFRSGLRLVLQNSLPQARLSEAASLEEALHLQGDEEDAPTLLLIDIQ 60 M + +L+IDDHALFRS + L+L+ LP+ +SE + +EEA P L+L+D+Q Sbjct: 1 MPSSSILLIDDHALFRSSVALMLEMRLPRTTVSERSRIEEA---SAQACRPPDLILLDLQ 57 Query: 61 LGGLNGIDGMAVLARRWPGVPAIILSADDTDHTVRQALQRGASAFVSKAATAEHIMAVIA 120 + G NG++ +A+L RW +I+SA D D V +A+QRGA F SKA EH++ I Sbjct: 58 MKGTNGLETIALLQERWSSARVVIVSAFDRDQ-VCEAIQRGAVEFHSKAECPEHLLQRIQ 116 Query: 121 KVGAGLTPCPNQRGDQPDDKAQFTPRQYEVLGLLSQGLTNKAIGRRLNLSENTIRGHVQA 180 + +G P P P T RQ +VLGLL +GLTNK I +L SE+T+R HVQA Sbjct: 117 ALLSGEPPEPRTIAATP---LPLTSRQRQVLGLLCRGLTNKEIALQLWRSEHTVRSHVQA 173 Query: 181 ILLALDVDNRAEAAFAARRGGLV 203 IL L R EAA AARR GLV Sbjct: 174 ILTILQTSCRTEAADAARRLGLV 196 >ref|YP_980351.1| two component LuxR family transcriptional regulator [Polaromonas naphthalenivorans CJ2] gb|ABM35430.1| two component transcriptional regulator, LuxR family [Polaromonas naphthalenivorans CJ2] Length = 219 Score = 141 bits (355), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 89/219 (40%), Positives = 126/219 (57%), Gaps = 26/219 (11%) Query: 1 MSTPHLLIIDDHALFRSGLRLVLQNS-LPQARLSEAASLEEALHLQGDEEDAPTLLLIDI 59 + P +L++DDH LFR G+RL+L +S L A + +A +L +AL LQ + L+L+DI Sbjct: 6 IEPPTVLLVDDHTLFREGMRLMLGSSPLVHAHILDAGNLPDALALQQSVD----LVLLDI 61 Query: 60 QLGGLNGIDGMAVLARRWPGVPAIILSADDTDHTVRQALQRGASAFVSKAATAEHIMAVI 119 L G+ G++G+ + +RWP ++LSA D VR+AL +GA FVSK A I + Sbjct: 62 GLPGIGGLEGLLSVRQRWPDAVIVMLSAHDRPELVREALSKGACGFVSKTAQPVQICQEV 121 Query: 120 AKVGAGLTPCPNQRGDQPDDKA---------------QFTPRQYEVLGLLSQGLTNKAIG 164 + QRG +P +A TPRQYEVL LL+QGL+NKAI Sbjct: 122 RRW------LYQQRGPEPQPQALPGEAAAGAIPGGDESLTPRQYEVLKLLAQGLSNKAIA 175 Query: 165 RRLNLSENTIRGHVQAILLALDVDNRAEAAFAARRGGLV 203 +L+LSE+TIR HV AIL + R EA A++R GL+ Sbjct: 176 FKLHLSEHTIRNHVVAILRHFNALTRTEAVMASQRLGLL 214 >ref|ZP_06482562.1| DNA-binding response regulator CorR [Pseudomonas syringae pv. aesculi str. 2250] Length = 163 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 75/153 (49%), Positives = 95/153 (62%), Gaps = 3/153 (1%) Query: 51 APTLLLIDIQLGGLNGIDGMAVLARRWPGVPAIILSADDTDHTVRQALQRGASAFVSKAA 110 AP L+L+D+QL NG++G+A+L RWP +I+SA D D VR+A+QRGA F SKA Sbjct: 13 APDLILLDVQLESTNGLEGIALLQERWPLARVVIVSAFDRDAIVREAIQRGAVEFHSKAE 72 Query: 111 TAEHIMAVIAKVGAGLTPCPNQRGDQPDDKAQFTPRQYEVLGLLSQGLTNKAIGRRLNLS 170 EH++ I + +G P P P T RQ +VLGLL +GLTNK I +L S Sbjct: 73 CPEHLLQRIQALLSGEPPEPRTIAATP---LPLTSRQRQVLGLLCRGLTNKEIALQLWRS 129 Query: 171 ENTIRGHVQAILLALDVDNRAEAAFAARRGGLV 203 E+T+R HVQAIL L R EAA AARR GLV Sbjct: 130 EHTVRSHVQAILTILQTSCRTEAADAARRLGLV 162 >ref|YP_586985.1| LuxR family transcriptional regulator [Cupriavidus metallidurans CH34] gb|ABF11716.1| putative two component transcriptional regulator, LuxR family [Cupriavidus metallidurans CH34] Length = 211 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 88/212 (41%), Positives = 118/212 (55%), Gaps = 14/212 (6%) Query: 1 MSTPHLLIIDDHALFRSGLRLVLQNSLPQARLSEAASLEEALHLQGDEEDAPTLLLIDIQ 60 MS LL+IDDH LFR+GL+L+L S A + EA S+ EA GD+ +LL+DIQ Sbjct: 1 MSQARLLLIDDHTLFRTGLKLLLAASPNVASIMEAGSVMEATEAHGDK--PVDILLLDIQ 58 Query: 61 LGGLNGIDGMAVLARRWPGVPAIILSADDTDHTVRQALQRGASAFVSKAATAEHIMAVIA 120 + GLNGI+G+ VL R + P +I+S + ++ + F+ K+A I IA Sbjct: 59 MPGLNGIEGIKVLRRHFSRAPIVIVSGTSGIDAIPDEARKEVAGFLPKSADPREIEEAIA 118 Query: 121 KVGAGLTPCPNQRGDQPDDK---------AQFTPRQYEVLGLLSQGLTNKAIGRRLNLSE 171 AG T + +QP D+ +Q TPRQ EVL L+ G +NK I L LSE Sbjct: 119 CCLAGGT---YFQTEQPGDRLPHTRAYKPSQLTPRQLEVLNQLNLGRSNKVIAYHLGLSE 175 Query: 172 NTIRGHVQAILLALDVDNRAEAAFAARRGGLV 203 NT+R HV AIL L V +R EA A+R GLV Sbjct: 176 NTVRVHVAAILDHLGVVSRVEAILEAQRRGLV 207