BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0279.p (255 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774668.1| transcription regulator protein [Herbaspiril... 500 e-140 ref|ZP_08868259.1| transcriptional regulator, AraC family [Azosp... 200 1e-49 gb|EGP57172.1| AraC family transcriptional regulator [Agrobacter... 184 8e-45 ref|NP_354444.2| AraC family transcriptional regulator [Agrobact... 179 4e-43 ref|YP_003882602.1| transcriptional regulator [Dickeya dadantii ... 171 7e-41 ref|ZP_08840509.1| hypothetical protein HMPREF0178_03283 [Biloph... 171 1e-40 ref|ZP_07945831.1| AraC family Bacterial regulatory helix-turn-h... 170 2e-40 ref|YP_004278632.1| AraC family transcriptional regulator [Agrob... 170 2e-40 ref|YP_003334010.1| AraC family transcriptional regulator [Dicke... 170 2e-40 ref|ZP_08530554.1| AraC family transcriptional regulator [Agroba... 170 2e-40 >ref|YP_003774668.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62760.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 255 Score = 500 bits (1288), Expect = e-140, Method: Compositional matrix adjust. Identities = 253/255 (99%), Positives = 253/255 (99%) Query: 1 MSLPSLPHPDLAPPLAQLHLRSYRDESLAHRHDFPQLVLPLAGHLALDIGGREGRADVAT 60 MSLPSLPHPDLAPPLAQLHLRSYRDESLAHRHDFPQLVLPLAGHLALDIGGREGRAD AT Sbjct: 1 MSLPSLPHPDLAPPLAQLHLRSYRDESLAHRHDFPQLVLPLAGHLALDIGGREGRADAAT 60 Query: 61 GAFVEPGARHATRAGGENRSLVLDLAPATVNTLQLEQLAQRPFLPLSVAAGKLVEFMAVS 120 GAFVEPGARHATRAGGENRSLVLDLAPATVN LQLEQLAQRPFLPLSVAAGKLVEFMAVS Sbjct: 61 GAFVEPGARHATRAGGENRSLVLDLAPATVNALQLEQLAQRPFLPLSVAAGKLVEFMAVS 120 Query: 121 LAQARSSPAMLQHWVPLLLDTLAQRTPQALSRLRRMMAQVEAQVAHPWTVAQMAEAAAIS 180 LAQARSSPAMLQHWVPLLLDTLAQRTPQALSRLRRMMAQVEAQVAHPWTVAQMAEAAAIS Sbjct: 121 LAQARSSPAMLQHWVPLLLDTLAQRTPQALSRLRRMMAQVEAQVAHPWTVAQMAEAAAIS 180 Query: 181 PSRLHEWFRAELDSSPRAWLAEVRMAQACQLLRTSALPLAQVAQRCGYADQSALTHAMRR 240 PSRLHEWFRAELDSSPRAWLAEVRMAQACQLLRTSALPLAQVAQRCGYADQSALTHAMRR Sbjct: 181 PSRLHEWFRAELDSSPRAWLAEVRMAQACQLLRTSALPLAQVAQRCGYADQSALTHAMRR 240 Query: 241 LRGVTPASYRKNYLE 255 LRGVTPASYRKNYLE Sbjct: 241 LRGVTPASYRKNYLE 255 >ref|ZP_08868259.1| transcriptional regulator, AraC family [Azospirillum amazonense Y2] gb|EGY02148.1| transcriptional regulator, AraC family [Azospirillum amazonense Y2] Length = 257 Score = 200 bits (509), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 107/246 (43%), Positives = 152/246 (61%), Gaps = 8/246 (3%) Query: 16 AQLHLRSYRDESLAHRHDFPQLVLPLAGHLALDIGGREGRADVATGAFVEPGARHATRAG 75 + L R YR H HD Q+VLP G L +++GGR GR D A AFV PG H RA Sbjct: 8 SHLSFRRYRSAGFCHAHDHAQIVLPCQGTLEMEVGGRGGRVDAAVAAFVLPGEVHCQRAE 67 Query: 76 GENRSLVLDLAPATV----NTLQLEQLAQRPFLPLSVAAGKLVEFMAVSLAQA----RSS 127 G+NR L++D A + LE+L +R FLP++ A +L++F+ ++ A R+ Sbjct: 68 GDNRFLIVDCAGGEGTGAPDERMLERLGRRTFLPMTPAVRRLLDFITLTAGNADGGGRNL 127 Query: 128 PAMLQHWVPLLLDTLAQRTPQALSRLRRMMAQVEAQVAHPWTVAQMAEAAAISPSRLHEW 187 + +HW PLLLDTL + SRL ++A++EA PWTV MA A +S SRLH Sbjct: 128 DGLARHWTPLLLDTLMAEPARPASRLHALLARLEAAPERPWTVEVMARTAGLSASRLHAL 187 Query: 188 FRAELDSSPRAWLAEVRMAQACQLLRTSALPLAQVAQRCGYADQSALTHAMRRLRGVTPA 247 FR ELD +P+A++A +R+A+ L ++ LP+AQ+A + GYADQSALT A+RR G+TPA Sbjct: 188 FREELDQTPQAYVASLRLARVMDQLASTTLPIAQIAYQSGYADQSALTRALRRAVGLTPA 247 Query: 248 SYRKNY 253 +YR+ + Sbjct: 248 AYRRQH 253 >gb|EGP57172.1| AraC family transcriptional regulator [Agrobacterium tumefaciens F2] Length = 252 Score = 184 bits (468), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 98/238 (41%), Positives = 136/238 (57%) Query: 16 AQLHLRSYRDESLAHRHDFPQLVLPLAGHLALDIGGREGRADVATGAFVEPGARHATRAG 75 A +RSYR+E RH F Q+VLPL+G L +D+ GR+ G F+ GA H A Sbjct: 12 ASADIRSYREERPKERHGFVQIVLPLSGRLQIDVAGRQDELSTGRGVFIHSGALHTQEAT 71 Query: 76 GENRSLVLDLAPATVNTLQLEQLAQRPFLPLSVAAGKLVEFMAVSLAQARSSPAMLQHWV 135 N SLV+D+ TV LE+ A PFL ++ +L+ +M + + W Sbjct: 72 ASNHSLVVDIDEGTVPEQTLERFAHAPFLDVAQDTRQLIAYMRSVIGSDGPRDDIAGLWA 131 Query: 136 PLLLDTLAQRTPQALSRLRRMMAQVEAQVAHPWTVAQMAEAAAISPSRLHEWFRAELDSS 195 PLL+D+LA RL+ + A V+A+ PWT+ +A AAIS SRLH F E S Sbjct: 132 PLLVDSLATEKTDIRRRLQALAAVVKAEPFFPWTIEMLAACAAISESRLHALFLEEFGLS 191 Query: 196 PRAWLAEVRMAQACQLLRTSALPLAQVAQRCGYADQSALTHAMRRLRGVTPASYRKNY 253 P WLAE+RM + C LLR S LP+A++A + G++DQ+ALT AMR G TPA+YR+ + Sbjct: 192 PHRWLAELRMDKVCALLRQSTLPIAEIALQAGFSDQTALTRAMRNAMGETPAAYRRAF 249 >ref|NP_354444.2| AraC family transcriptional regulator [Agrobacterium tumefaciens str. C58] gb|AAK87229.2| transcriptional regulator, AraC family [Agrobacterium tumefaciens str. C58] Length = 244 Score = 179 bits (453), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 94/238 (39%), Positives = 136/238 (57%) Query: 15 LAQLHLRSYRDESLAHRHDFPQLVLPLAGHLALDIGGREGRADVATGAFVEPGARHATRA 74 +A +R+YR E RH F Q+VLP++GHL +D+ GR+ G F+ A H A Sbjct: 3 VASADIRTYRQERPRERHGFVQIVLPVSGHLRIDVAGRQDELSTGRGVFIHRDAPHTQEA 62 Query: 75 GGENRSLVLDLAPATVNTLQLEQLAQRPFLPLSVAAGKLVEFMAVSLAQARSSPAMLQHW 134 N SLV+D+ + V+ LE+ A+ PFL ++ +L+ +M + + W Sbjct: 63 TDINHSLVVDIDESVVSERTLEKFARTPFLDIAPDTRQLITYMRGVIGTDGRRDDVTGLW 122 Query: 135 VPLLLDTLAQRTPQALSRLRRMMAQVEAQVAHPWTVAQMAEAAAISPSRLHEWFRAELDS 194 PLL+D+LA RLR + A V A+ PWT+ +A A+IS SRLH F E Sbjct: 123 APLLVDSLANERADIRKRLRWLGAVVGAEPFFPWTIDMLAACASISESRLHALFIEEFGL 182 Query: 195 SPRAWLAEVRMAQACQLLRTSALPLAQVAQRCGYADQSALTHAMRRLRGVTPASYRKN 252 SP WL +RM + C LLR S+LP+A++A R G++DQ+ALT A+R G TPA+YR+N Sbjct: 183 SPHRWLVGLRMDKVCTLLRESSLPIAEIALRSGFSDQTALTRALRNAVGETPAAYRRN 240 >ref|YP_003882602.1| transcriptional regulator [Dickeya dadantii 3937] gb|ADM98045.1| Transcriptional regulator [Dickeya dadantii 3937] Length = 254 Score = 171 bits (434), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 95/241 (39%), Positives = 142/241 (58%) Query: 11 LAPPLAQLHLRSYRDESLAHRHDFPQLVLPLAGHLALDIGGREGRADVATGAFVEPGARH 70 + P L +R Y HRHD QLVLPL+G L++DI G+ + D A+V+ H Sbjct: 2 VIPNAFMLSIRGYGALEAPHRHDHSQLVLPLSGSLSIDISGQSAQLDRRLAAYVDRHFPH 61 Query: 71 ATRAGGENRSLVLDLAPATVNTLQLEQLAQRPFLPLSVAAGKLVEFMAVSLAQARSSPAM 130 A ++ G N+ L++D+ P ++ L + LA FL L+ A L+++M L + R + Sbjct: 62 AQQSRGANQFLIVDVEPDHLDPLVADYLASCRFLSLAPEANNLIDYMGTMLVKGRVPDSR 121 Query: 131 LQHWVPLLLDTLAQRTPQALSRLRRMMAQVEAQVAHPWTVAQMAEAAAISPSRLHEWFRA 190 +Q W PLLLD L PQ SRL +++ +++ WT MA+ A +S SRLH FR Sbjct: 122 IQLWAPLLLDALTGEGPQPRSRLAGLISAIDSDPFLDWTTEFMAQQAGMSVSRLHAVFRR 181 Query: 191 ELDSSPRAWLAEVRMAQACQLLRTSALPLAQVAQRCGYADQSALTHAMRRLRGVTPASYR 250 E D++P AWLA VR+ + L T+ + +A++A R YADQSALT AMR+ G+TPA++R Sbjct: 182 ERDTTPHAWLARVRLGRVQHWLATTNVSIAEIAYRGRYADQSALTRAMRKATGLTPAAFR 241 Query: 251 K 251 + Sbjct: 242 Q 242 >ref|ZP_08840509.1| hypothetical protein HMPREF0178_03283 [Bilophila sp. 4_1_30] gb|EGW43861.1| hypothetical protein HMPREF0178_03283 [Bilophila sp. 4_1_30] Length = 256 Score = 171 bits (433), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 102/235 (43%), Positives = 136/235 (57%), Gaps = 1/235 (0%) Query: 17 QLHLRSYRDESLAHRHDFPQLVLPLAGHLALDIGGREGRADVATGAFVEPGARHATRAGG 76 ++ SY E RH Q VLP+AG L + IGG EGR + AFV PG H+ A Sbjct: 4 RIDFLSYEGERNNERHPHAQFVLPIAGELEISIGGAEGRLTPSCAAFVAPGVPHSQLATV 63 Query: 77 ENRSLVLDLAPATVNTLQLEQLAQRPFLPLSVAAGKLVEFMAVSLAQARSSPAMLQHWVP 136 N L+++ A EQLA++ FLP+S A L+ F +S + S P Q W+P Sbjct: 64 SNAFLIVNCDLAECGVPAAEQLAEQVFLPVSEATRHLIGFAELSRDRF-SQPGTTQCWMP 122 Query: 137 LLLDTLAQRTPQALSRLRRMMAQVEAQVAHPWTVAQMAEAAAISPSRLHEWFRAELDSSP 196 LLL++ +R SRL + ++A PWTV +MA ISPSRLH R+E SP Sbjct: 123 LLLNSFLERPVCRPSRLAALERLIDAHPGAPWTVGEMARRIGISPSRLHALSRSEWGLSP 182 Query: 197 RAWLAEVRMAQACQLLRTSALPLAQVAQRCGYADQSALTHAMRRLRGVTPASYRK 251 +AWLAE R++ + L S LP+A +A R GYADQSALT AM+RL G+TPA+YR+ Sbjct: 183 QAWLAERRISHVRKWLAESDLPIADLALRAGYADQSALTRAMQRLTGLTPAAYRR 237 >ref|ZP_07945831.1| AraC family Bacterial regulatory helix-turn-helix protein [Bilophila wadsworthia 3_1_6] gb|EFV42983.1| AraC family Bacterial regulatory helix-turn-helix protein [Bilophila wadsworthia 3_1_6] Length = 256 Score = 170 bits (431), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 102/235 (43%), Positives = 135/235 (57%), Gaps = 1/235 (0%) Query: 17 QLHLRSYRDESLAHRHDFPQLVLPLAGHLALDIGGREGRADVATGAFVEPGARHATRAGG 76 ++ SY E RH Q VLP+AG L + IGG EGR + AFV PG H+ A Sbjct: 4 RIDFLSYEGERNNERHPHAQFVLPIAGELEISIGGAEGRLTPSCAAFVAPGVPHSQLATV 63 Query: 77 ENRSLVLDLAPATVNTLQLEQLAQRPFLPLSVAAGKLVEFMAVSLAQARSSPAMLQHWVP 136 N L+++ A EQLA++ FLP+S A L+ F +S + S P Q W+P Sbjct: 64 SNAFLIVNCDLAECGVPAAEQLAEQIFLPVSEATRHLIGFAELSRDRF-SQPGTTQCWMP 122 Query: 137 LLLDTLAQRTPQALSRLRRMMAQVEAQVAHPWTVAQMAEAAAISPSRLHEWFRAELDSSP 196 LLL++ +R SRL + ++A PWTV +MA ISPSRLH R+E SP Sbjct: 123 LLLNSFLERPVCRPSRLAVLERLIDAHPGAPWTVGEMARRIGISPSRLHALSRSEWGLSP 182 Query: 197 RAWLAEVRMAQACQLLRTSALPLAQVAQRCGYADQSALTHAMRRLRGVTPASYRK 251 +AWLAE R+ + L S LP+A +A R GYADQSALT AM+RL G+TPA+YR+ Sbjct: 183 QAWLAERRIGHVRKWLAESDLPIADLALRAGYADQSALTRAMQRLTGLTPAAYRR 237 >ref|YP_004278632.1| AraC family transcriptional regulator [Agrobacterium sp. H13-3] gb|ADY64312.1| transcriptional regulator, AraC family [Agrobacterium sp. H13-3] Length = 252 Score = 170 bits (431), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 90/238 (37%), Positives = 128/238 (53%) Query: 16 AQLHLRSYRDESLAHRHDFPQLVLPLAGHLALDIGGREGRADVATGAFVEPGARHATRAG 75 A +R+Y E RH F Q+VLP++G L +D+ G + F+ P H A Sbjct: 12 ASADIRTYTQERPKERHGFVQIVLPVSGCLRIDVAGLQDELSTGRAVFIHPNTSHTQEAT 71 Query: 76 GENRSLVLDLAPATVNTLQLEQLAQRPFLPLSVAAGKLVEFMAVSLAQARSSPAMLQHWV 135 NRSLV+D+ V LE+ +PFL ++ +L+ +M + + W Sbjct: 72 TINRSLVVDIDETAVPEQVLERFVHKPFLDIARDTRQLIAYMRGVIGSDGPREDIANLWA 131 Query: 136 PLLLDTLAQRTPQALSRLRRMMAQVEAQVAHPWTVAQMAEAAAISPSRLHEWFRAELDSS 195 PLL+D+LA RL + V A+ PWT+ +A AAIS SRLH F E + Sbjct: 132 PLLIDSLATEKTDIRHRLHALGEIVRAEPFFPWTIETLASCAAISDSRLHALFLEEFNLP 191 Query: 196 PRAWLAEVRMAQACQLLRTSALPLAQVAQRCGYADQSALTHAMRRLRGVTPASYRKNY 253 P WLAE+RM + C LLR S LP+A++A R G++DQ+ALT AMR G TPA+YR+ + Sbjct: 192 PHRWLAELRMDKVCALLRHSTLPIAEIALRAGFSDQTALTRAMRNAMGKTPAAYRRAF 249 >ref|YP_003334010.1| AraC family transcriptional regulator [Dickeya dadantii Ech586] gb|ACZ77305.1| transcriptional regulator, AraC family [Dickeya dadantii Ech586] Length = 254 Score = 170 bits (430), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 96/245 (39%), Positives = 141/245 (57%) Query: 11 LAPPLAQLHLRSYRDESLAHRHDFPQLVLPLAGHLALDIGGREGRADVATGAFVEPGARH 70 P L +R Y HRH+ QLVLPL+G L +DI G+ + D A+V+ H Sbjct: 2 FVPGAFMLSIRGYGALESPHRHEHAQLVLPLSGSLNIDISGQSAQLDRRLAAYVDRDFPH 61 Query: 71 ATRAGGENRSLVLDLAPATVNTLQLEQLAQRPFLPLSVAAGKLVEFMAVSLAQARSSPAM 130 A ++ GEN+ L++DL + + + LA FL L+ A L+++M L + R + Sbjct: 62 AQQSHGENQFLIVDLESSHLEPWVEDYLASCRFLKLAPEANHLIDYMGGMLVKGRVPISR 121 Query: 131 LQHWVPLLLDTLAQRTPQALSRLRRMMAQVEAQVAHPWTVAQMAEAAAISPSRLHEWFRA 190 +Q W PLLLD L + SRL +++ +++ WT+ MA+ +S SRLH FR Sbjct: 122 IQLWTPLLLDALTGQGLPPRSRLAGLISAIDSDPFLDWTIEFMAQQVGMSVSRLHAVFRN 181 Query: 191 ELDSSPRAWLAEVRMAQACQLLRTSALPLAQVAQRCGYADQSALTHAMRRLRGVTPASYR 250 ELD++P AWLA VR+ + L T+ LP+A++A R GYADQSALT AMR+ G+TPA +R Sbjct: 182 ELDNTPHAWLAHVRLGRVQHWLATTNLPIAEIAYRGGYADQSALTRAMRKATGLTPAVFR 241 Query: 251 KNYLE 255 + E Sbjct: 242 QQLQE 246 >ref|ZP_08530554.1| AraC family transcriptional regulator [Agrobacterium sp. ATCC 31749] gb|EGL62785.1| AraC family transcriptional regulator [Agrobacterium sp. ATCC 31749] Length = 244 Score = 170 bits (430), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 91/238 (38%), Positives = 132/238 (55%) Query: 15 LAQLHLRSYRDESLAHRHDFPQLVLPLAGHLALDIGGREGRADVATGAFVEPGARHATRA 74 +A +R+YR E +H F Q+VLP++GHL +D+ GR+ G F+ A H A Sbjct: 3 VASADIRTYRQERPREQHGFVQIVLPVSGHLRIDVAGRQDELSTGRGVFIHRDALHTQEA 62 Query: 75 GGENRSLVLDLAPATVNTLQLEQLAQRPFLPLSVAAGKLVEFMAVSLAQARSSPAMLQHW 134 N SLV+D+ V LE+ A PFL ++ +L+ +M + + W Sbjct: 63 TDINHSLVVDIDQNAVPEHTLERFAHAPFLDIAPDTRQLIAYMCGLIKTDGRRDDIAGLW 122 Query: 135 VPLLLDTLAQRTPQALSRLRRMMAQVEAQVAHPWTVAQMAEAAAISPSRLHEWFRAELDS 194 PLL+D+LA RLR++ A V+A+ PWT+ +A IS SRLH F E Sbjct: 123 APLLMDSLATEKTGIRLRLRKLSAVVKAEPFFPWTIDMLAACVTISDSRLHALFLEEFGL 182 Query: 195 SPRAWLAEVRMAQACQLLRTSALPLAQVAQRCGYADQSALTHAMRRLRGVTPASYRKN 252 P WLA +RM + C LL S+LP+A++A R G++DQ+ALT A+R G TPA+YR+N Sbjct: 183 PPHRWLAGLRMDKVCTLLSESSLPIAEIALRAGFSDQTALTRALRNAVGETPAAYRRN 240