BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0237.p (169 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003747806.1| hypothetical protein RCFBP_mp10610 [Ralstoni... 185 2e-45 emb|CCA87500.1| conserved hypothetical protein [Ralstonia syzygi... 180 6e-44 emb|CBJ38048.1| conserved protein of unknown function [Ralstonia... 172 1e-41 ref|YP_004355711.1| hypothetical protein PSEBR_a4298 [Pseudomona... 164 6e-39 gb|AEG71564.1| conserved hypothetical protein [Ralstonia solanac... 157 5e-37 ref|NP_522631.1| putative transmembrane protein [Ralstonia solan... 156 1e-36 ref|YP_003750063.1| transmembrane protein [Ralstonia solanacearu... 151 4e-35 ref|YP_003748380.1| hypothetical protein RCFBP_mp20567 [Ralstoni... 146 9e-34 ref|YP_003778058.1| transmembrane protein [Herbaspirillum serope... 128 3e-28 ref|NP_522628.1| hypothetical protein RS06033 [Ralstonia solanac... 91 5e-17 >ref|YP_003747806.1| hypothetical protein RCFBP_mp10610 [Ralstonia solanacearum CFBP2957] emb|CBJ53397.1| conserved protein of unknown function [Ralstonia solanacearum CFBP2957] Length = 301 Score = 185 bits (470), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 95/181 (52%), Positives = 126/181 (69%), Gaps = 13/181 (7%) Query: 1 LLGLALALEVCDDEWERLIALIGAEGEDMLIDSIIATRKPQRIVGKRLLHAKPYARLRAA 60 L+GLALALE+ + +W+RL+ALIG+EGED L+D +IA+R+PQR +G+ LLH KPYA L Sbjct: 117 LVGLALALEIPEAQWQRLLALIGSEGEDTLLDRVIASREPQRSIGQALLHPKPYAHLLKV 176 Query: 61 IEAPSPAQGELLRDFVSHWYDELERKG-------DAELWWYVFGDAAKHPLKLGSYFGRW 113 I APS Q E L DFV HWY EL+R + +WY +GD K PL+ GSYFGRW Sbjct: 177 INAPSGEQAETLLDFVEHWYPELKRPAPKSRKVPTIQPYWYDYGDPEKLPLEKGSYFGRW 236 Query: 114 CLEAVAAVKAFGLDDRLCLSLQHYPADLVHPE-TTTEARAP-----AGKNWALQMISKIF 167 C+EA+AAVKAFGLDD LCL +HYP DL+ P+ +T R P +G++ ++++SK Sbjct: 237 CVEAIAAVKAFGLDDSLCLGHEHYPGDLLRPDGPSTHKRRPDVDSASGESVLMRLLSKFR 296 Query: 168 K 168 K Sbjct: 297 K 297 >emb|CCA87500.1| conserved hypothetical protein [Ralstonia syzygii R24] Length = 299 Score = 180 bits (457), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 92/177 (51%), Positives = 121/177 (68%), Gaps = 9/177 (5%) Query: 1 LLGLALALEVCDDEWERLIALIGAEGEDMLIDSIIATRKPQRIVGKRLLHAKPYARLRAA 60 L+GLALALE+ D EW+RL+AL+G EG+D+L+D +IA+R+PQR +G+ L H KPYARL Sbjct: 117 LVGLALALEIPDVEWKRLLALVGGEGQDVLLDRVIASREPQRSIGQVLAHPKPYARLLKT 176 Query: 61 IEAPSPAQGELLRDFVSHWYDELERKGDA-------ELWWYVFGDAAKHPLKLGSYFGRW 113 ++A Q E L DFV+HWY EL+R + +WY +GD K PL+ GSYFGRW Sbjct: 177 VDAAPGRQAEALLDFVNHWYPELKRPAPKSRKAPTIQPYWYDYGDPEKFPLEKGSYFGRW 236 Query: 114 CLEAVAAVKAFGLDDRLCLSLQHYPADLVHPE--TTTEARAPAGKNWALQMISKIFK 168 C+EAVAAVKAFGLDD LCL +HYP DL+ P+ +T + RA K L + F+ Sbjct: 237 CIEAVAAVKAFGLDDNLCLGHEHYPGDLLRPDGPSTHKPRAQVDKPGVLARLLSKFR 293 >emb|CBJ38048.1| conserved protein of unknown function [Ralstonia solanacearum CMR15] Length = 301 Score = 172 bits (437), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 82/164 (50%), Positives = 112/164 (68%), Gaps = 7/164 (4%) Query: 1 LLGLALALEVCDDEWERLIALIGAEGEDMLIDSIIATRKPQRIVGKRLLHAKPYARLRAA 60 L+GLAL LE+ D +W+RL+ L+G EGED+L+D +IA+R+PQR G+ LLH +PYARL AA Sbjct: 117 LIGLALTLEISDAQWQRLLVLVGGEGEDVLLDRVIASREPQRSTGRVLLHPQPYARLLAA 176 Query: 61 IEAPSPAQGELLRDFVSHWYDELERKGDAEL-------WWYVFGDAAKHPLKLGSYFGRW 113 ++A Q L DFV+HWY EL+R E +WY +G +PL + +YFGRW Sbjct: 177 VDAAPGQQAGALLDFVTHWYPELKRPAPKERQTPRFQPFWYHYGHPENNPLAMENYFGRW 236 Query: 114 CLEAVAAVKAFGLDDRLCLSLQHYPADLVHPETTTEARAPAGKN 157 C+EA AAVKAFG+DD LCL +HYP DL+ P+ + + AG + Sbjct: 237 CIEAAAAVKAFGMDDSLCLGHEHYPGDLLRPDGPSTHQPAAGAD 280 >ref|YP_004355711.1| hypothetical protein PSEBR_a4298 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gb|AEA70707.1| Hypothetical protein PSEBR_a4298 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 299 Score = 164 bits (414), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 83/163 (50%), Positives = 110/163 (67%), Gaps = 15/163 (9%) Query: 1 LLGLALALEVCDDEWERLIALIGAEGEDMLIDSIIATRKPQRIVGKRLLHAKPYARLRAA 60 L+GL LAL++ DD+W+RL+ALIG EGED+L+D IIA+R P+R +G LL+ KPYARL A Sbjct: 114 LVGLGLALDIPDDQWKRLLALIGNEGEDVLLDRIIASRSPERKIGSVLLYPKPYARLLTA 173 Query: 61 IEAPSPAQGELLRDFVSHWYDELERKGDA----------ELWWYVFGDAAKHPLKLGSYF 110 ++AP+ +Q LL FV HWY E+ + +WY +GD + G+YF Sbjct: 174 VDAPADSQASLLSAFVKHWYAEVRTGAKSGSDPQAVSYRHPYWYTYGDEN---FEGGAYF 230 Query: 111 GRWCLEAVAAVKAFGLDDRLCLSLQHYPADLVHPE--TTTEAR 151 GRWC+EAVAAVKAFG+DD CL L+HYP DL+ P +T AR Sbjct: 231 GRWCVEAVAAVKAFGMDDSQCLGLEHYPGDLLRPNGPSTHPAR 273 >gb|AEG71564.1| conserved hypothetical protein [Ralstonia solanacearum Po82] Length = 303 Score = 157 bits (397), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 79/155 (50%), Positives = 104/155 (67%), Gaps = 13/155 (8%) Query: 1 LLGLALALEVCDDEWERLIALIGAEGEDMLIDSIIATRKPQRIVGKRLLHAKPYARLRAA 60 L+GLALA+++ DD+W RL+ LIG EGED L+D +IA+R+ R +G RL H +PY RL A Sbjct: 114 LVGLALAMDIPDDQWNRLLQLIGNEGEDALLDRVIASRQAGREIGTRLCHPQPYRRLLEA 173 Query: 61 IEAPSPAQGELLRDFVSHWYDELERKGDAEL----------WWYVFGDAAKHPLKLGSYF 110 + AP QGELL FV +WY EL+R EL +W+ +GD + G+YF Sbjct: 174 VNAPREKQGELLFKFVDNWYVELDRPAKKELSEKTAMYERPYWHRYGD---QNFEGGAYF 230 Query: 111 GRWCLEAVAAVKAFGLDDRLCLSLQHYPADLVHPE 145 GRWC+EAVAAVKAFG+DD LCL +YP DL+ P+ Sbjct: 231 GRWCVEAVAAVKAFGIDDSLCLGHPNYPGDLLRPD 265 >ref|NP_522631.1| putative transmembrane protein [Ralstonia solanacearum GMI1000] emb|CAD18221.1| putative transmembrane protein [Ralstonia solanacearum GMI1000] Length = 305 Score = 156 bits (394), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 86/168 (51%), Positives = 110/168 (65%), Gaps = 16/168 (9%) Query: 1 LLGLALALEVCDDEWERLIALIGAEGEDMLIDSIIATRKPQRIVGKRLLHAKPYARLRAA 60 L+GLALA+ + DD+W RLIALIG EGED+L+D IIA+R+ R +G++L H KPY RL A Sbjct: 115 LVGLALAINIPDDQWGRLIALIGNEGEDVLLDRIIASRQSGRRIGEKLCHPKPYQRLLDA 174 Query: 61 IEAPSPAQGELLRDFVSHWYDELER---KGDAEL-------WWYVFGDAAKHPLKLGSYF 110 + AP QG+ L FV WY EL+R KG +E +W+ +GD + G+YF Sbjct: 175 VNAPKTEQGKALFAFVEKWYVELDRPPKKGLSEQTAMYDRPYWHRYGD---QNFEGGAYF 231 Query: 111 GRWCLEAVAAVKAFGLDDRLCLSLQHYPADLVH---PETTTEARAPAG 155 GRWC+EAVAAVKAFG+DD LCL +YP DL+H P T AP G Sbjct: 232 GRWCVEAVAAVKAFGIDDSLCLGHPNYPGDLLHADAPTTHPSRPAPEG 279 >ref|YP_003750063.1| transmembrane protein [Ralstonia solanacearum PSI07] emb|CBJ35440.1| putative transmembrane protein [Ralstonia solanacearum PSI07] Length = 304 Score = 151 bits (381), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 80/158 (50%), Positives = 105/158 (66%), Gaps = 13/158 (8%) Query: 1 LLGLALALEVCDDEWERLIALIGAEGEDMLIDSIIATRKPQRIVGKRLLHAKPYARLRAA 60 L+GLALAL++ DD+W+RL+ALIG EGED+L+D IIA+R+ R +G +L H KPY RL A Sbjct: 114 LVGLALALDIPDDQWKRLVALIGNEGEDVLLDRIIASRQAGRRIGGKLCHPKPYQRLLDA 173 Query: 61 IEAPSPAQGELLRDFVSHWYDELER---KGDAEL-------WWYVFGDAAKHPLKLGSYF 110 + AP Q + L FV WY L+R KG +E +W+ +GD + G+YF Sbjct: 174 VNAPQAEQAKSLLVFVESWYAGLDRPAKKGLSEQTAMYDRPYWHRYGD---QNFEGGAYF 230 Query: 111 GRWCLEAVAAVKAFGLDDRLCLSLQHYPADLVHPETTT 148 GRWC+EAVAAVKAFG+D LCL +YP DL+HP T Sbjct: 231 GRWCVEAVAAVKAFGIDGSLCLGHPNYPGDLLHPNGPT 268 >ref|YP_003748380.1| hypothetical protein RCFBP_mp20567 [Ralstonia solanacearum CFBP2957] emb|CBJ53993.1| conserved protein of unknown function [Ralstonia solanacearum CFBP2957] Length = 304 Score = 146 bits (369), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 75/155 (48%), Positives = 102/155 (65%), Gaps = 13/155 (8%) Query: 1 LLGLALALEVCDDEWERLIALIGAEGEDMLIDSIIATRKPQRIVGKRLLHAKPYARLRAA 60 L+GLALAL++ +D+W+RLI L+G EGED+L+D IIA+RK R + +L + KPY RL A Sbjct: 115 LVGLALALDIPNDQWKRLIDLVGNEGEDILLDGIIASRKKDRKINAKLCYPKPYQRLLDA 174 Query: 61 IEAPSPAQGELLRDFVSHWYDELERKGDAEL----------WWYVFGDAAKHPLKLGSYF 110 + AP G+ L FV +WY EL+R L +W+ +GD + G+YF Sbjct: 175 VNAPKAEHGKSLLVFVENWYAELDRPPKKGLSDQTAMYDRPYWHRYGD---QNFEGGAYF 231 Query: 111 GRWCLEAVAAVKAFGLDDRLCLSLQHYPADLVHPE 145 GRWC+EAVAAVKAFG+DD LCL +YP DL+ P+ Sbjct: 232 GRWCVEAVAAVKAFGIDDSLCLGHPNYPGDLLRPD 266 >ref|YP_003778058.1| transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ66150.1| transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 322 Score = 128 bits (321), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 66/159 (41%), Positives = 94/159 (59%), Gaps = 14/159 (8%) Query: 1 LLGLALALEVCDDEWERLIALIGAEGEDMLIDSIIATRKPQRIVGKRLLHAKPYARLRAA 60 + GLAL + +D W+RLIAL+G EG+D L+D+I+A+R+ R++G L H KPY +L Sbjct: 114 ITGLALCSPLGEDGWKRLIALMGNEGKDRLLDTILASRQQNRVIGTTLCHPKPYQQLLDV 173 Query: 61 IEAPSPAQGELLRDFVSHWYDELER-------KGDAELW----WYVFGDAAKHPLKLGSY 109 + Q L+ FVS WY +L+R D L+ WY +G+ H + G+Y Sbjct: 174 VTCDPEQQAHALQRFVSTWYADLDRPPANKKLSSDTALYNRPFWYKYGE---HNRQGGAY 230 Query: 110 FGRWCLEAVAAVKAFGLDDRLCLSLQHYPADLVHPETTT 148 FG+WC+EAVA K FG+DD LC+ YP DL+ P T Sbjct: 231 FGQWCVEAVAVAKLFGIDDSLCVGHPQYPGDLLRPGVVT 269 >ref|NP_522628.1| hypothetical protein RS06033 [Ralstonia solanacearum GMI1000] emb|CAD18218.1| conserved hypothetical protein [Ralstonia solanacearum GMI1000] Length = 186 Score = 90.9 bits (224), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 44/84 (52%), Positives = 60/84 (71%) Query: 1 LLGLALALEVCDDEWERLIALIGAEGEDMLIDSIIATRKPQRIVGKRLLHAKPYARLRAA 60 L+GLALAL++ DD+W RL+ LIG EGED L+D +IA+R+ R +G RL + +PY RL A Sbjct: 60 LVGLALALDIPDDQWNRLLQLIGNEGEDELLDRVIASRQAGRQIGTRLCYPRPYRRLLEA 119 Query: 61 IEAPSPAQGELLRDFVSHWYDELE 84 + AP Q E L FV++WY EL+ Sbjct: 120 VNAPRDEQAEPLFAFVNNWYVELD 143