BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0210.p (970 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774745.1| cytochrome protein [Herbaspirillum seropedic... 1769 0.0 ref|YP_725434.1| aerobic-type carbon monoxide dehydrogenase larg... 713 0.0 ref|YP_004684713.1| alcohol dehydrogenase cytochrome c subunit [... 710 0.0 ref|YP_296722.1| cytochrome c, class I [Ralstonia eutropha JMP13... 707 0.0 gb|ADR59522.1| NdhL [Pseudomonas putida BIRD-1] 703 0.0 ref|YP_001669810.1| aldehyde oxidase and xanthine dehydrogenase ... 703 0.0 ref|NP_746078.1| aldehyde dehydrogenase family protein, /cytochr... 701 0.0 ref|NP_888321.1| cytochrome [Bordetella bronchiseptica RB50] >gi... 700 0.0 ref|YP_001267221.1| aldehyde oxidase and xanthine dehydrogenase ... 697 0.0 ref|ZP_06640465.1| conserved hypothetical protein [Serratia odor... 696 0.0 >ref|YP_003774745.1| cytochrome protein [Herbaspirillum seropedicae SmR1] gb|ADJ62837.1| cytochrome protein [Herbaspirillum seropedicae SmR1] Length = 974 Score = 1769 bits (4581), Expect = 0.0, Method: Compositional matrix adjust. Identities = 948/969 (97%), Positives = 955/969 (98%) Query: 1 VDLQATATATPASLPSLRHARLALPPVLGWQSQRYTGARLQGVDVDAALGLPGVHRLVQQ 60 VDL+ATATATPASL SLRHARLALPPVLGWQSQRYTGARLQGVDVDAALGLPGVHRLVQQ Sbjct: 5 VDLRATATATPASLASLRHARLALPPVLGWQSQRYTGARLQGVDVDAALGLPGVHRLVQQ 64 Query: 61 RHLLAVIADSDAQARQACALLKPRWSTPADDDRALRPRQAHSLYQRGKEEEGLYDLTLEA 120 RHLLAVIADSDAQARQACALLKPRWSTPADDDRALRPRQAHSLYQRGKEEEGLYDLTLEA Sbjct: 65 RHLLAVIADSDAQARQACALLKPRWSTPADDDRALRPRQAHSLYQRGKEEEGLYDLTLEA 124 Query: 121 DYQWQDGEATLSSPDLVALAAPSGTGMRIDLPFGNPAAIALEVAGLLALPVAQIEVRSHR 180 DYQWQDGEATLSSPD+VALAAPSGTGMRIDLPFGNPAAIALEVAGLLALPVAQIEVRSHR Sbjct: 125 DYQWQDGEATLSSPDVVALAAPSGTGMRIDLPFGNPAAIALEVAGLLALPVAQIEVRSHR 184 Query: 181 APADAREYRAASDVAGVAALLCQQCGEAVSLALTPAEAPALSTSLHLRGEFDEDGALGNT 240 APADAREYRAASDVAGVAALLCQQCGEAVSLALTPAEAPALSTSLHLRGEFDEDGALGNT Sbjct: 185 APADAREYRAASDVAGVAALLCQQCGEAVSLALTPAEAPALSTSLHLRGEFDEDGALGNT 244 Query: 241 TLDITQDSPAPPLAWLLTETAYALQDAAAIDGAALAPPYDWRSVHVSAAQEASVPVAATC 300 TLDITQDSPAPPLAWLLTETAYALQDAAAIDGAALAPPYDWRSVHVSAA EASVPVAATC Sbjct: 245 TLDITQDSPAPPLAWLLTETAYALQDAAAIDGAALAPPYDWRSVHVSAALEASVPVAATC 304 Query: 301 FAQEVFLDEVAQRLGQDPVQYRLAHLPDSHGRDLIRSVAHGARWHPARQQGQRQGGRLRG 360 FAQEVFLDEVAQRLGQDPVQYRLAHLPDSHGRDLIRSVAHGARWHPARQQGQRQGGRLRG Sbjct: 305 FAQEVFLDEVAQRLGQDPVQYRLAHLPDSHGRDLIRSVAHGARWHPARQQGQRQGGRLRG 364 Query: 361 RGFAYASTIEQHAGQPVQSWSAWVAEVEYDEASGELSVTKVTAGHDVRAAGQTPAASPAL 420 RGFAYASTIEQHAGQPVQSWSAWVAEVEYDEASGELSVTKVTAGHDVRAAGQ PA SP L Sbjct: 365 RGFAYASTIEQHAGQPVQSWSAWVAEVEYDEASGELSVTKVTAGHDVRAAGQAPATSPVL 424 Query: 421 AQANADRLGQQARLALAHSMHGGRGFDAWSSEAGLPSTLPSSLGLPQSTALPTVELVGTP 480 AQANA+RL QQARLALA SMHGG+GFDAWSSEAGLPSTLPSSLGLPQ TALPTVELVGTP Sbjct: 425 AQANAERLDQQARLALAQSMHGGQGFDAWSSEAGLPSTLPSSLGLPQRTALPTVELVGTP 484 Query: 481 PALQNIQLNAGAAFTLPAAAAISNAVYAATGVRLRQAPFSGEQIRLALNASAPASGAQRW 540 ALQNIQLNAGAAFTLPAAAAISNAVYAATGVRLRQAPFSGEQIRLALNASAPASGAQRW Sbjct: 485 AALQNIQLNAGAAFTLPAAAAISNAVYAATGVRLRQAPFSGEQIRLALNASAPASGAQRW 544 Query: 541 RKYGWLGAAVAAVGATLTLAMPWRSEIAPIARPDPDLYSAATIERGRRVALAGDCAVCHT 600 RKYGWLGAAVAAVGATLTLAMPWRSEIAPIARPDPDLYSAATIERGRRVALAGDCAVCHT Sbjct: 545 RKYGWLGAAVAAVGATLTLAMPWRSEIAPIARPDPDLYSAATIERGRRVALAGDCAVCHT 604 Query: 601 APGGATNAGGHALQTPFGTVYSTNITPDEHTGIGNWSYAAFERAMREGIHRDGRHLYPAF 660 APGGATNAGGHALQTPFGTVYSTNITPDEHTGIGNWSYAAFERAMREGIHRDGRHLYPAF Sbjct: 605 APGGATNAGGHALQTPFGTVYSTNITPDEHTGIGNWSYAAFERAMREGIHRDGRHLYPAF 664 Query: 661 PYTAFAKISEADMQSLYAYLMAQPAVASTPPANDLRFPFNLRPLLAGWNTLFHDPQVFQP 720 PYTAFAKISEADMQSLYAYLMAQPAVASTPPANDLRFPFNLRPLLAGWNTLFHDPQVFQP Sbjct: 665 PYTAFAKISEADMQSLYAYLMAQPAVASTPPANDLRFPFNLRPLLAGWNTLFHDPQVFQP 724 Query: 721 DPARSDLWNRGAYLVDGAGHCAACHSPRNALGAEKGGRHYLGGGTVDGWEAPALTALSKS 780 DPARSDLWNRGAYLV+GAGHCAACHSPRNALGAEKGGRHYLGGG VDGWEAPALTALSKS Sbjct: 725 DPARSDLWNRGAYLVEGAGHCAACHSPRNALGAEKGGRHYLGGGMVDGWEAPALTALSKS 784 Query: 781 PTPWTEEELFAYLRRGFSARHGIAAGPMAPVVAELAQLPPGDVRAIAHYLASFQSDTTTS 840 PTPWTEEELFAYLR GFSARHGIAAGPMAPVVAELAQLPPGDVRAIAHYLASFQS +S Sbjct: 785 PTPWTEEELFAYLRTGFSARHGIAAGPMAPVVAELAQLPPGDVRAIAHYLASFQSGAASS 844 Query: 841 PAAPVPASAAQAPSPAELRSRANGQRLFAGACAACHQEGTGPTLFGVKPSLRVNTNLHSD 900 PAAPVPASAAQAPSPAELRSRANGQRLFAGACAACHQEGTGPTLFGVKPSLRVNTNLHSD Sbjct: 845 PAAPVPASAAQAPSPAELRSRANGQRLFAGACAACHQEGTGPTLFGVKPSLRVNTNLHSD 904 Query: 901 TPDNLVHVILHGIREPANPALGYMPGFANSFSDAQMVDLLAYLRSEFAAGKPAWQGVEAS 960 TPDNLVHVILHGIREPANPALGYMPGFANSFSDAQMVDLLAYLRSEFAAGKPAWQGVEA+ Sbjct: 905 TPDNLVHVILHGIREPANPALGYMPGFANSFSDAQMVDLLAYLRSEFAAGKPAWQGVEAA 964 Query: 961 IARSRAMPM 969 IARSRAMPM Sbjct: 965 IARSRAMPM 973 >ref|YP_725434.1| aerobic-type carbon monoxide dehydrogenase large subunit [Ralstonia eutropha H16] emb|CAJ92066.1| Aerobic-type carbon monoxide dehydrogenase homolog, large subunit [Ralstonia eutropha H16] Length = 975 Score = 713 bits (1841), Expect = 0.0, Method: Compositional matrix adjust. Identities = 491/1006 (48%), Positives = 588/1006 (58%), Gaps = 77/1006 (7%) Query: 4 QAT-ATATPASLP----SLRHARLALPPVLGWQSQRYTGARLQGVDVDAALGLPGVHRLV 58 QAT ATA S+P AR+ PP L W + ARL G +AAL LPGV +V Sbjct: 8 QATPATAVAGSMPPPAADCLVARVLTPPGLRWIDGKPLAARLLGAQHEAALALPGVRAVV 67 Query: 59 QQRHLLAVIADSDAQARQACALLKPRWSTPADDDRALRPRQAHSLYQRGKEEEGLY--DL 116 + + V A S AQA A L+ RWS P D A P H+L +RG + L D Sbjct: 68 IRNNFAGVAAASGAQAANAIQALQARWSAPPRADDA--PVTRHALARRGNADAVLAGADA 125 Query: 117 TLEADYQW----QDGEATLSSPDLVALAAPSGTGMRIDLPFGNPAAIALEVAGLLALPVA 172 YQW GEA + A+A + + LP P A+ E+A LL + Sbjct: 126 RHTQHYQWPLAGTRGEAYCT-----AVADWRDGKLTVWLPSTRPGALRAELAALLGIAPQ 180 Query: 173 QIEVRSHRAPAD-AREYRAASDVAGVAALLCQQCGEAVSLALTPAEAPALSTSLHLRGEF 231 Q+ + ++P D A A A AALL G V L A+ +L +R Sbjct: 181 QVVLACWQSPDDRADPALLAPHAAADAALLAHAAGLPVMRRLCAADVGLADAALDVR--- 237 Query: 232 DEDGALGNTTLDITQDS------PAPPLAWLLTETAYALQDAAAID--GAALAPPYDWRS 283 D AL T ++ + PA PLA LT TA + D D GA PPY Sbjct: 238 -VDTALAGTAIEAYAATLAGTAAPAVPLALWLTHTASPVADGIDADHAGATTMPPYRIPH 296 Query: 284 VHVSAAQEASVPVAAT-------CFAQEVFLDEVAQRLGQDPVQYRLAHLPDSHGRDLIR 336 V + A A+ AA FA+E LDE+A G DPV RLAHL D+ G L+R Sbjct: 297 VDLVATGNAAAFDAAPPAAARAQVFARESHLDELAAASGTDPVALRLAHLDDARGTALVR 356 Query: 337 SVAHGARWHPARQQGQRQGGRL-RGRGFAYASTIEQHAGQPVQSWSAWVAEVEYDEASGE 395 VA A W PA + G + RGRGFAYA TI+ AGQ +WSAWVAEVE D +GE Sbjct: 357 QVAERAAWTPAAPRANTAAGNVQRGRGFAYAHTIDHEAGQ---TWSAWVAEVEVDGTTGE 413 Query: 396 LSVTKVTAGHDVRAAGQTPAASPALAQANADRLGQQARLALAHS----MHGGRGFDAWSS 451 L+VT+VT GHD S +L +A A + LA+A + FD W + Sbjct: 414 LAVTRVTVGHD----------SESLPRAQAAPSARSLELAVADAALQLTSATPAFDTWPA 463 Query: 452 EAGLPSTLPSSLGLPQSTALPTVELVGTPPALQNIQLNAGAAFTLPAAAAISNAVYAATG 511 EA PS + +P S ALP V L GT + L A T+PAAAA++NA+Y ATG Sbjct: 464 EA--PSASQALPAVPGS-ALPEVRLAGT--LAPHDALAASPTGTMPAAAAVANAIYDATG 518 Query: 512 VRLRQAPFSGEQIRLALNASAPASGAQRWRKYGWLGAAVAAVGATLTLAMPWRSEIAPIA 571 VRLR PFS ++IRLAL + P G QR K GW+ AA AA MPWR+ IAP+A Sbjct: 519 VRLRAPPFSADRIRLALAEARP--GNQR-SKRGWIAAAAAAAAGVCATLMPWRAPIAPVA 575 Query: 572 RPDPDLYSAATIERGRRVALAGDCAVCHTAPGGATNAGGHALQTPFGTVYSTNITPDEHT 631 P+ YSAAT+ERGR VA AGDCAVCHTAPGGA NAGG L+TPFGTVYSTNITPD T Sbjct: 576 PPEAGFYSAATLERGRLVAAAGDCAVCHTAPGGAKNAGGLPLETPFGTVYSTNITPDVQT 635 Query: 632 GIGNWSYAAFERAMREGIHRDGRHLYPAFPYTAFAKISEADMQSLYAYLMAQPAVASTPP 691 GIGNWS+AAFERAMREGIHRDGR LYPAFPYTAFAKIS+ DMQ+LY YLM+ V + P Sbjct: 636 GIGNWSFAAFERAMREGIHRDGRRLYPAFPYTAFAKISDGDMQALYGYLMSAEPVKAEVP 695 Query: 692 ANDLRFPFNLRPLLAGWNTLFHDPQVFQPDPARSDLWNRGAYLVDGAGHCAACHSPRNAL 751 L FPFNLRPLLAGWN LFH + F PDP+RS WNRGAYL +G GHC+ACHSPRNAL Sbjct: 696 QTQLSFPFNLRPLLAGWNLLFHRNERFTPDPSRSAQWNRGAYLAEGLGHCSACHSPRNAL 755 Query: 752 GAEKGGRHYLGGGTVDGWEAPALTALSKSPTPWTEEELFAYLRRGFSARHGIAAGPMAPV 811 G EKGGR YL GG+ +GWEAP LTALS++P PWTE LF YLR G++ HG AAGPMAPV Sbjct: 756 GGEKGGRQYLTGGSAEGWEAPPLTALSQAPLPWTEAALFTYLRGGYAPHHGAAAGPMAPV 815 Query: 812 VAELAQLPPGDVRAIAHYLASFQSDTTTSPAAPVPASAAQAPSPAELRSR-------ANG 864 V ELAQLP DVRAIAHY+ASF + AP PA A + E RS G Sbjct: 816 VEELAQLPESDVRAIAHYVASFGTP------APSPAVLAAQAAQLEQRSAQAARTLGGPG 869 Query: 865 QRLFAGACAACHQEGTGPTLFGVKPSLRVNTNLHSDTPDNLVHVILHGIREPANPALGYM 924 +RL+ ACA CHQ G FGVKPSL +NTNLHS PDN++ V+L G+ P N LG M Sbjct: 870 ERLYQSACAVCHQSDQGIAQFGVKPSLALNTNLHSKLPDNVIQVLLQGMPAPPNSELGAM 929 Query: 925 PGFANSFSDAQMVDLLAYLRSEFAAGKPAWQGVEASIARSRAMPMH 970 P +A++ D Q+ L YLR+ FA KPAWQ +E ++AR RAMP H Sbjct: 930 PAYADTLDDQQIAQLTQYLRARFAPDKPAWQDLENTVARLRAMPAH 975 >ref|YP_004684713.1| alcohol dehydrogenase cytochrome c subunit [Cupriavidus necator N-1] gb|AEI76232.1| alcohol dehydrogenase cytochrome c subunit [Cupriavidus necator N-1] Length = 974 Score = 710 bits (1832), Expect = 0.0, Method: Compositional matrix adjust. Identities = 478/1004 (47%), Positives = 584/1004 (58%), Gaps = 74/1004 (7%) Query: 4 QATATATPASLP----SLRHARLALPPVLGWQSQRYTGARLQGVDVDAALGLPGVHRLVQ 59 QAT TA S+P AR+ PP L W + ARL G + +AAL LPGV +V Sbjct: 8 QATPTAVAGSMPPPAADCLVARVLTPPGLRWIDGKPLTARLLGAEREAALALPGVRAVVI 67 Query: 60 QRHLLAVIADSDAQARQACALLKPRWSTPADDDRALRPRQAHSLYQRGKEEEGLY--DLT 117 + + + S AQA A L+ RWS P D A P +L QRG + L D Sbjct: 68 RNNFAGMATASGAQATTATHALQARWSAPPRADDA--PVARLTLAQRGNADAVLAGADAR 125 Query: 118 LEADYQWQDGEATLSSPDLVALAAPSGTGMRIDLPFGNPAAIALEVAGLLALPVAQIEVR 177 YQW T + A+A + + LP P A+ E+A LL + Q+ + Sbjct: 126 HTQHYQWPLA-GTHAEAYCTAVADWRDGKLTVWLPSTRPGALRAELAALLGIAPQQVVLA 184 Query: 178 SHRAPAD-AREYRAASDVAGVAALLCQQCGEAVSLALTPAEAPALSTSLHLRGEFDEDGA 236 ++P D A A A AALL G V L A+ L +R D A Sbjct: 185 CWQSPDDRADPALLAPHAAADAALLAHAAGLPVMRRLCAADVGLADAVLDVR----VDTA 240 Query: 237 LGNTTLDITQDS------PAPPLAWLLTETAYALQD--AAAIDGAALAPPYDWRSVHVSA 288 L T ++ + PA PLA LT TA + + AA G PPY R HV Sbjct: 241 LAGTAVEAYAATLAGTAAPAVPLALWLTHTASPVANSIAAGHAGDTAMPPY--RIPHVDL 298 Query: 289 AQEASVPVAAT---------CFAQEVFLDEVAQRLGQDPVQYRLAHLPDSHGRDLIRSVA 339 S + FA+E LDE+A G DPV R+AHL D+ G L+R V+ Sbjct: 299 VSTGSAAASDAAPLAAARAQVFARESHLDELAADSGTDPVALRMAHLDDARGTALVRQVS 358 Query: 340 HGARWHPARQQGQRQGGRL-RGRGFAYASTIEQHAGQPVQSWSAWVAEVEYDEASGELSV 398 A W A + G + RGRGFAYA+T++ AGQ +WSAWVAEVE D +GEL+V Sbjct: 359 ERAGWTSAAPRANTAAGNVQRGRGFAYANTVDHEAGQ---TWSAWVAEVEVDGTTGELAV 415 Query: 399 TKVTAGHDVRAAGQTPAASPA--LAQANADRLGQQARLALAHSMHGGRGFDAWSSEAGLP 456 T+VT GHD + + AA A L QA AD A L L + FD W +EA Sbjct: 416 TRVTVGHDSESLPRAQAAPSARSLEQAVAD-----AALQLTSATPA---FDTWPAEAPPA 467 Query: 457 S-TLPSSLGLPQSTALPTVELVGTPPALQNIQLNAGAAFTLPAAAAISNAVYAATGVRLR 515 S TLP+ +P ST LP + L GT + L A T+PAAAA++NA+Y ATGVRLR Sbjct: 468 SQTLPA---VPGST-LPEIRLAGT--LATHDALAASPTDTMPAAAAVANAIYDATGVRLR 521 Query: 516 QAPFSGEQIRLALNASAPASGAQRWRKYGWLGAAVAAVGATLTLAMPWRSEIAPIARPDP 575 PFS ++IRLAL + P G QR K GW+ AA AA +PWR+ IAP+A P+ Sbjct: 522 APPFSADRIRLALAEARP--GNQR-SKRGWIAAAAAAAAGVCATLLPWRAPIAPVAPPEA 578 Query: 576 DLYSAATIERGRRVALAGDCAVCHTAPGGATNAGGHALQTPFGTVYSTNITPDEHTGIGN 635 YSAAT+ERGR VA AGDCAVCHTAPGG NAGG L+TPFGTVYSTNITPD TGIGN Sbjct: 579 GFYSAATLERGRLVAAAGDCAVCHTAPGGVKNAGGLPLETPFGTVYSTNITPDVQTGIGN 638 Query: 636 WSYAAFERAMREGIHRDGRHLYPAFPYTAFAKISEADMQSLYAYLMAQPAVASTPPANDL 695 WS+AAFERAMREGIHRDGR LYPAFPYTAFAKIS+ DMQ+LY YLM+ V S P L Sbjct: 639 WSFAAFERAMREGIHRDGRRLYPAFPYTAFAKISDGDMQALYGYLMSAEPVKSEVPQTQL 698 Query: 696 RFPFNLRPLLAGWNTLFHDPQVFQPDPARSDLWNRGAYLVDGAGHCAACHSPRNALGAEK 755 FPFN+RPLLAGWN +FH + F PDP+RS WNRGAYL +G GHC+ACHSPRNALGAE+ Sbjct: 699 AFPFNVRPLLAGWNLVFHRNERFTPDPSRSAQWNRGAYLAEGLGHCSACHSPRNALGAEQ 758 Query: 756 GGRHYLGGGTVDGWEAPALTALSKSPTPWTEEELFAYLRRGFSARHGIAAGPMAPVVAEL 815 GGR YL GG+ +GWEAP L+ALS +P PWTE LF YLR G++ HG AAGPMAPVV EL Sbjct: 759 GGRQYLTGGSAEGWEAPPLSALSHAPLPWTEAALFTYLRGGYAPHHGAAAGPMAPVVEEL 818 Query: 816 AQLPPGDVRAIAHYLASFQSDTTTSPAAPVPASAAQAPSPAELRSRAN---------GQR 866 AQLP DVRAIAHY+ASF + P P+ A A++ R+ G+R Sbjct: 819 AQLPESDVRAIAHYVASFGT--------PPPSPTVLAAQAAQIEQRSAQAARTLGGPGER 870 Query: 867 LFAGACAACHQEGTGPTLFGVKPSLRVNTNLHSDTPDNLVHVILHGIREPANPALGYMPG 926 L+ ACA CHQ G FGVKPSL +NTNLHS PDN++ V+L G+ P N LG MP Sbjct: 871 LYQSACAVCHQSDQGIAQFGVKPSLALNTNLHSKLPDNVIQVLLQGMPAPPNSELGAMPA 930 Query: 927 FANSFSDAQMVDLLAYLRSEFAAGKPAWQGVEASIARSRAMPMH 970 +A++ D Q+ L YLR+ FA KPAWQ +E ++AR RAMP H Sbjct: 931 YADTLDDQQITQLAQYLRARFAPDKPAWQDLENTVARLRAMPAH 974 >ref|YP_296722.1| cytochrome c, class I [Ralstonia eutropha JMP134] gb|AAZ61878.1| Cytochrome c, class I [Ralstonia eutropha JMP134] Length = 976 Score = 707 bits (1826), Expect = 0.0, Method: Compositional matrix adjust. Identities = 475/971 (48%), Positives = 572/971 (58%), Gaps = 53/971 (5%) Query: 25 PPVLGWQSQRYTGARLQGVDVDAALGLPGVHRLVQQRHLLAVIADSDAQARQACALLKPR 84 PP L W + ARL + DAA G+PGV +V + + A +ADS QA Q A L+ R Sbjct: 34 PPGLRWAGGQPLVARLLEANRDAAAGMPGVRAVVIRNNFAAAVADSAEQAAQGIAALQAR 93 Query: 85 WSTPADDDRALRPRQAHSLYQRGKEEEGLYDLTLEA--DYQWQDGEATLSSPDLVALAAP 142 W+ P + + P + +L QRG L YQW ++ A+A Sbjct: 94 WAAPPAAENS--PVRRETLAQRGNASAALEQSHARQAQHYQWPLAGMQATTATCTAIADW 151 Query: 143 SGTGMRIDLPFGNPAAIALEVAGLLALPVAQIEVRSHRAPAD-AREYRAASDVAGVAALL 201 +R+ LP P + E+A LL + QI + + D A A A AALL Sbjct: 152 RDGALRVWLPSTRPGGLRAELAALLGITEQQITLVCWQDADDTADAGLLAHHAAADAALL 211 Query: 202 CQQCGEAVSLALTPAEAPALSTSLHLRGEFDEDGALGNTTLDITQDS------PAPPLAW 255 G V +T + LH + D A G +D + P+ PLA Sbjct: 212 AHATGACVRRTITADDVGLADAMLH----WQIDSARGGANIDAYAATLGGTIAPSVPLAL 267 Query: 256 LLTETAYALQDAAAIDGAA--LAPPYDWRSVHVSAAQEASVPVA-----ATCFAQEVFLD 308 LT TA + D AA AA + PPY ++ + AA + + A FA+E LD Sbjct: 268 WLTRTAAPVADVAADTEAADHVLPPYRIPNIDIGAAGPYAAGASLADARAQVFARESHLD 327 Query: 309 EVAQRLGQDPVQYRLAHLPDSHGRDLIRSVAHGARWHPAR--QQGQRQGGRLRGRGFAYA 366 E+A DPV RL HL D+ G L+R VA A W P+ + R G RGRGFAYA Sbjct: 328 EIAASASTDPVALRLGHLDDARGAALVREVADRAGWVPSAPGARTSRGGNVRRGRGFAYA 387 Query: 367 STIEQHAGQPVQSWSAWVAEVEYDEASGELSVTKVTAGHDVRAAGQTPAASPALAQANAD 426 T E Q SWSAWVAEVE D +GEL+VT+VT GHD AA PA S ++ A Sbjct: 388 QTAESDTAQ---SWSAWVAEVEVDGNTGELAVTRVTVGHDSEAA--VPARSTPVSPALEA 442 Query: 427 RLGQQARLALAHSMHGGRGFDAWSSEAGLPSTLPSSLGLPQSTALPTVELVGTPPALQNI 486 + Q AR A S FDAW +E LP T S+L +P + + GT A+ N Sbjct: 443 MVAQTARQLTAQSPD----FDAWPAE--LPETSDSALPAVTGINVPEIRVAGTL-AMGNT 495 Query: 487 QLNAGAAFTLPAAAAISNAVYAATGVRLRQAPFSGEQIRLALNASAPASGAQRWRKYGWL 546 L AG A TLPAAAA++NA+Y ATGVRLR+ PFS ++IR AL+A P +R K GW Sbjct: 496 -LAAGPAATLPAAAAVANAIYDATGVRLREPPFSADRIRRALDAQQPE---KRRSKRGWF 551 Query: 547 GAAVAAVGATLTLAMPWRSEIAPIARPDPDLYSAATIERGRRVALAGDCAVCHTAPGGAT 606 AA AA +PWR+ IAP+ +P YSAAT+ERGR VA AGDCAVCHTAPGG Sbjct: 552 AAAAAAAAGLCATVLPWRAPIAPVTPQEPGFYSAATLERGRLVAAAGDCAVCHTAPGGVK 611 Query: 607 NAGGHALQTPFGTVYSTNITPDEHTGIGNWSYAAFERAMREGIHRDGRHLYPAFPYTAFA 666 NAGG AL+TPFGTVYSTNITPD TGIGNWS+AAFERAMREGIHRDGR LYPAFPYTAFA Sbjct: 612 NAGGLALETPFGTVYSTNITPDVETGIGNWSFAAFERAMREGIHRDGRRLYPAFPYTAFA 671 Query: 667 KISEADMQSLYAYLMAQPAVASTPPANDLRFPFNLRPLLAGWNTLFHDPQVFQPDPARSD 726 KIS+ADMQSLYAYLM+ V + P +L FPFN+RPLLAGWN LFH + FQPD ARS Sbjct: 672 KISDADMQSLYAYLMSSEPVKADVPRTELAFPFNIRPLLAGWNLLFHRNEQFQPDAARSA 731 Query: 727 LWNRGAYLVDGAGHCAACHSPRNALGAEKGGRHYLGGGTVDGWEAPALTALSKSPTPWTE 786 WNRGAYL +G GHC+ACHSPRN LG EKGGRHYL GGT +GWEAPALTALS++P PWTE Sbjct: 732 QWNRGAYLAEGLGHCSACHSPRNPLGGEKGGRHYLTGGTAEGWEAPALTALSRAPVPWTE 791 Query: 787 EELFAYLRRGFSARHGIAAGPMAPVVAELAQLPPGDVRAIAHYLASFQSDTTTSPAAPVP 846 + LF YLR G++ HG AAGPMAPVV ELA LP DVRAIAHY+ASF S P P Sbjct: 792 DALFTYLRGGYAVHHGAAAGPMAPVVEELALLPESDVRAIAHYVASF------SAPPPAP 845 Query: 847 ASAAQAPSPAELRSRANGQ-------RLFAGACAACHQEGTGPTLFGVKPSLRVNTNLHS 899 A E RS RL+ ACA CHQ G FGVKPSL +NTNLHS Sbjct: 846 AEITAQAMQYERRSAEAATTLGGPAARLYQSACAVCHQSDQGMRQFGVKPSLALNTNLHS 905 Query: 900 DTPDNLVHVILHGIREPANPALGYMPGFANSFSDAQMVDLLAYLRSEFAAGKPAWQGVEA 959 D PDN++ V+L G+ P N LG MP +++S D Q+V L YLR+ FA KPAWQ VEA Sbjct: 906 DRPDNVIQVLLQGMPAPPNSTLGAMPSYSDSLDDQQIVALTQYLRARFAPDKPAWQDVEA 965 Query: 960 SIARSRAMPMH 970 ++AR RA P H Sbjct: 966 TVARLRAAPAH 976 >gb|ADR59522.1| NdhL [Pseudomonas putida BIRD-1] Length = 1187 Score = 703 bits (1815), Expect = 0.0, Method: Compositional matrix adjust. Identities = 436/993 (43%), Positives = 567/993 (57%), Gaps = 61/993 (6%) Query: 14 LPSLRHARLALPPVLGWQSQRYTGARLQGVDVDAALGLPGVHRLVQQRHLLAVIADSDAQ 73 LP++ H R+ PP G S + G L VD + LPGV +V R + V+A+ + Q Sbjct: 215 LPNMLHGRVIRPPYAGHDSGDFVGNSLLAVDESSIAHLPGVVAVVVIRDFVGVVAEREEQ 274 Query: 74 ARQACALLKPRWS-------TPADDDRALR--PRQAHSLYQRGKEEEGLYDLT--LEADY 122 A +A LK W +D +A+R PR ++ +G + G+ + + L Y Sbjct: 275 AIRAAHELKVSWKPFTGKLPDLSDVAQAIRDNPRVQRTVLDQGDVDGGIANASQRLSRSY 334 Query: 123 QWQDGEATLSSPDLVALAAPSGTGMRIDLPFGNPAAIALEVAGLLALPVAQIEVRSHRAP 182 W P ALA + +R+ NP + ++A LLA A+IE+ A Sbjct: 335 LWPYQLHASIGPS-CALADFTAGQIRVWSGTQNPHLLRADLAWLLACDEARIEIIRMEA- 392 Query: 183 ADAREYRAASDVAGVAALLCQQCGEAVSLALTPA-----EAPALSTSLHLRGEFDEDGAL 237 A A DV A LL + V + LT E + + + G + DG++ Sbjct: 393 AGCYGRNCADDVCADAVLLSRAVQRPVRVQLTREQEHVWEPKGTAQLMEIDGGLNADGSV 452 Query: 238 GNTTLDITQDSP-APPLAWLLTETAYALQDAAAIDGAALAPPYDWRSVHVS--------- 287 + S AP LA LLT T + + PPYD++ + V+ Sbjct: 453 AAYDFQTSYPSNGAPTLALLLTGTVEPVPALFEMGDRTSIPPYDYQHMRVTINDMTPLVR 512 Query: 288 AAQEASVPVAATCFAQEVFLDEVAQRLGQDPVQYRLAHLPDSHGRDLIRSVAHGARWHPA 347 A+ V FA E ++DE+A G DPV+YRL HL D DL+++ A A+W P Sbjct: 513 ASWMRGVSAMPNSFAHESYIDELAFAAGVDPVEYRLKHLSDPRAIDLVKATAERAQWQPH 572 Query: 348 RQ--QGQRQGGRLRGRGFAYASTIEQHAGQPVQSWSAWVAEVEYDEASGELSVTKVTAGH 405 + Q Q +G LRGRGFAYA I +W+AWVA+V D +GE++VT+V GH Sbjct: 573 TRPMQTQAEGDVLRGRGFAYARYIHSKFPGFGAAWAAWVADVAVDRRTGEVAVTRVVIGH 632 Query: 406 DVRAAGQTPAASPALAQANADRLGQQARLALAHSMHGGRGFDAWSSEAGLPSTLPSSLGL 465 D AG Q + + + +R+ L + A G P L Sbjct: 633 D---AGMMVNPEGVRHQIHGNVIQSTSRV-LKEQVCFEESTVASKEWGGYPI-----LTF 683 Query: 466 PQSTALPTVELVGTPPALQNIQLNAGAAFTLPAAAAISNAVYAATGVRLRQAPFSGEQIR 525 P+ A+ + L P + +G + ++P+AAAI+NA++ ATG+R R+ P + E++R Sbjct: 684 PEVPAIDVMML----PRQHEPPMGSGESASVPSAAAIANAIFDATGIRFRELPITAERVR 739 Query: 526 LAL-------NASAPASGAQRWRKYGWLGAAVAAVGATLTL---AMPWRSEIAPIARPDP 575 AL +A APA + + K+ W G+ GA L + A+PWR+EIAP+ P Sbjct: 740 AALGGEGQGPDAPAPAQPSTKRSKW-WFGSLAGVFGAALGMLATALPWRAEIAPVTPPGV 798 Query: 576 DLYSAATIERGRRVALAGDCAVCHTAPGGATNAGGHALQTPFGTVYSTNITPDEHTGIGN 635 +SAA +ERGR+VA AGDCAVCHT GG NAGG A+ TPFGT+YSTNITPD TGIG Sbjct: 799 GSWSAAMLERGRQVAAAGDCAVCHTVGGGKANAGGLAMDTPFGTLYSTNITPDPETGIGR 858 Query: 636 WSYAAFERAMREGIHRDGRHLYPAFPYTAFAKISEADMQSLYAYLMAQPAVASTPPANDL 695 WS+AAFERAMREGI RDGRHLYPAFPYT+F I++ADMQ+LYAYLM+Q V PAN + Sbjct: 859 WSFAAFERAMREGISRDGRHLYPAFPYTSFRNINDADMQALYAYLMSQTPVRQEAPANQM 918 Query: 696 RFPFNLRPLLAGWNTLFHDPQVFQPDPARSDLWNRGAYLVDGAGHCAACHSPRNALGAEK 755 RFPFN RPL+AGWN LF +QPDP R+ WNRGAYLVDG GHC ACHSPRN LGAEK Sbjct: 919 RFPFNQRPLMAGWNALFLQRGEYQPDPQRNAQWNRGAYLVDGLGHCTACHSPRNLLGAEK 978 Query: 756 GGRHYLGGGTVDGWEAPALTALSKSPTPWTEEELFAYLRRGFSARHGIAAGPMAPVVAEL 815 GG YL GG VDGWEAPAL AL KS TPW+E+ELF YL GFS +HG+AAGPM PVV+EL Sbjct: 979 GGSSYLAGGMVDGWEAPALNALGKSSTPWSEDELFNYLSTGFSEKHGVAAGPMGPVVSEL 1038 Query: 816 AQLPPGDVRAIAHYLASFQSDTTTSPAAPVPASAAQAPSPAELRSRANGQRLFAGACAAC 875 A LP DVRAIAHYL+S + P + AP S +NG+R+F GAC AC Sbjct: 1039 ATLPTSDVRAIAHYLSSLDGE-------PQTLATNAAPQVDSHVSLSNGERVFKGACLAC 1091 Query: 876 HQEGTGPTLFGVKPSLRVNTNLHSDTPDNLVHVILHGIREPANPALGYMPGFANSFSDAQ 935 H +G GP LFGV PS+ VN+N+HSD PDNL+ V+LHGI PA LGYMPGF +S SD Q Sbjct: 1092 HSDGLGPKLFGVSPSMAVNSNVHSDLPDNLLRVVLHGIPTPATRDLGYMPGFKDSLSDRQ 1151 Query: 936 MVDLLAYLRSEFAAGKPAWQGVEASIARSRAMP 968 + DL AYLR FAA KPAWQG+ + A+ RA P Sbjct: 1152 VADLAAYLRHRFAADKPAWQGLASKAAQVRANP 1184 >ref|YP_001669810.1| aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein [Pseudomonas putida GB-1] gb|ABY99474.1| aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein [Pseudomonas putida GB-1] Length = 1187 Score = 703 bits (1815), Expect = 0.0, Method: Compositional matrix adjust. Identities = 436/993 (43%), Positives = 564/993 (56%), Gaps = 61/993 (6%) Query: 14 LPSLRHARLALPPVLGWQSQRYTGARLQGVDVDAALGLPGVHRLVQQRHLLAVIADSDAQ 73 LP + H R+ PP G S + G L VD + +PGV +V R + V+A+ + Q Sbjct: 215 LPGMLHGRVIRPPYAGHDSGDFVGNSLLAVDESSIAHIPGVVAVVVIRDFVGVVAEREEQ 274 Query: 74 ARQACALLKPRWS-------TPADDDRALR--PRQAHSLYQRGKEEEGLYDLT--LEADY 122 A +A LK W +D +A+R PR ++ +G + GL + + L Y Sbjct: 275 AIRAAHELKISWKPFTGKLPDLSDIAQAIRDNPRVQRTVLDQGDVDGGLANASQRLSRSY 334 Query: 123 QWQDGEATLSSPDLVALAAPSGTGMRIDLPFGNPAAIALEVAGLLALPVAQIEVRSHRAP 182 W P ALA + +R+ NP + ++A LLA A+IE+ A Sbjct: 335 LWPYQLHASIGPS-CALADFTEGPIRVWSGTQNPHLLRADLAWLLACDEARIEIIRMEA- 392 Query: 183 ADAREYRAASDVAGVAALLCQQCGEAVSLALTPA-----EAPALSTSLHLRGEFDEDGAL 237 A A DV A LL + V + LT E + + + G + DG++ Sbjct: 393 AGCYGRNCADDVCADAVLLSRAVQRPVRVQLTREQEHVWEPKGTAQLMEIDGGLNADGSV 452 Query: 238 GNTTLDITQDSP-APPLAWLLTETAYALQDAAAIDGAALAPPYDWRSVHVS--------- 287 + S AP LA LLT + + PPYD+ + V+ Sbjct: 453 AAYDFQTSYPSNGAPTLALLLTGAVEPVPALFEMGDRTSIPPYDYEHMRVTINDMTPLVR 512 Query: 288 AAQEASVPVAATCFAQEVFLDEVAQRLGQDPVQYRLAHLPDSHGRDLIRSVAHGARWHPA 347 A+ V FA E ++DE+A DPV+YRL HL D DL+++ A A+W P Sbjct: 513 ASWMRGVSAMPNSFAHESYIDELAFAAAVDPVEYRLKHLSDPRAIDLVKATAERAQWQPH 572 Query: 348 RQ--QGQRQGGRLRGRGFAYASTIEQHAGQPVQSWSAWVAEVEYDEASGELSVTKVTAGH 405 Q Q Q G LRGRGFAYA I +W+AWVA+V D +GE++VT+V GH Sbjct: 573 TQPRQAQADGDVLRGRGFAYARYIHSKFPGFGAAWAAWVADVAVDRRTGEVAVTRVVIGH 632 Query: 406 DVRAAGQTPAASPALAQANADRLGQQARLALAHSMHGGRGFDAWSSEAGLPSTLPSSLGL 465 D AG Q + + + +R+ L + A G P L Sbjct: 633 D---AGMMVNPEGVRHQIHGNVIQSTSRV-LKEQVSFEESTVASKEWGGYPI-----LTF 683 Query: 466 PQSTALPTVELVGTPPALQNIQLNAGAAFTLPAAAAISNAVYAATGVRLRQAPFSGEQIR 525 P+ A+ + L P + +G + ++P+AAAI+NA++ ATG+R R+ P + E++R Sbjct: 684 PELPAIDVMML----PRQHEPPMGSGESASVPSAAAIANAIFDATGIRFRELPITAERVR 739 Query: 526 LAL-------NASAPASGAQRWRKYGWLGAAVAAVGATLTL---AMPWRSEIAPIARPDP 575 AL + APA + K+ W G+ GA L + A+PWR+EIAP+ P Sbjct: 740 AALGGEGQGPDVPAPAQPTTKRSKW-WFGSLAGVFGAALGMLATALPWRAEIAPVTPPGA 798 Query: 576 DLYSAATIERGRRVALAGDCAVCHTAPGGATNAGGHALQTPFGTVYSTNITPDEHTGIGN 635 +SAA +ERGR+VA AGDCAVCHT GG N GG A+ TPFGT+YSTNITPD TGIG Sbjct: 799 GSWSAAMLERGRQVAAAGDCAVCHTVSGGKVNTGGLAMDTPFGTLYSTNITPDPETGIGR 858 Query: 636 WSYAAFERAMREGIHRDGRHLYPAFPYTAFAKISEADMQSLYAYLMAQPAVASTPPANDL 695 WS+AAFERAMREGI RDGRHLYPAFPYT+F I++ADMQ+LYAYLM+Q V PAN + Sbjct: 859 WSFAAFERAMREGISRDGRHLYPAFPYTSFRNINDADMQALYAYLMSQTPVRQAAPANQM 918 Query: 696 RFPFNLRPLLAGWNTLFHDPQVFQPDPARSDLWNRGAYLVDGAGHCAACHSPRNALGAEK 755 RFPFN RPL+AGWN LF +QPDP RS+ WNRGAYLVDG GHC ACHSPRN +GAEK Sbjct: 919 RFPFNQRPLMAGWNALFLQRGEYQPDPQRSEQWNRGAYLVDGLGHCTACHSPRNLMGAEK 978 Query: 756 GGRHYLGGGTVDGWEAPALTALSKSPTPWTEEELFAYLRRGFSARHGIAAGPMAPVVAEL 815 G YL GG VDGWEAPAL AL KS TPW+E+ELF+YL GFS +HG+AAGPM PVV+EL Sbjct: 979 AGSSYLAGGMVDGWEAPALNALGKSATPWSEDELFSYLSTGFSEKHGVAAGPMGPVVSEL 1038 Query: 816 AQLPPGDVRAIAHYLASFQSDTTTSPAAPVPASAAQAPSPAELRSRANGQRLFAGACAAC 875 A LP DVRAIAHYL+S + P A V +A QA + L +NG+R+F GAC AC Sbjct: 1039 ATLPKSDVRAIAHYLSSLDGE----PQAQVAKAAPQADTQVSL---SNGERVFKGACMAC 1091 Query: 876 HQEGTGPTLFGVKPSLRVNTNLHSDTPDNLVHVILHGIREPANPALGYMPGFANSFSDAQ 935 H +G GP LFGV PS+ VN+N+HSD PDNL+ V+LHGI PA LGYMPGF +S SD Q Sbjct: 1092 HSDGLGPKLFGVSPSMAVNSNVHSDLPDNLLRVVLHGIATPATRDLGYMPGFKDSLSDRQ 1151 Query: 936 MVDLLAYLRSEFAAGKPAWQGVEASIARSRAMP 968 + DL AYLR FAA KPAWQG+ A A+ RA P Sbjct: 1152 VADLAAYLRQRFAADKPAWQGLAAKAAQIRANP 1184 >ref|NP_746078.1| aldehyde dehydrogenase family protein, /cytochrome c family protein [Pseudomonas putida KT2440] gb|AAN69542.1|AE016587_8 aldehyde dehydrogenase family protein, putative/cytochrome c family protein, putative [Pseudomonas putida KT2440] gb|ACC64340.1| NdhL [Pseudomonas putida KT2440] Length = 1187 Score = 701 bits (1808), Expect = 0.0, Method: Compositional matrix adjust. Identities = 434/993 (43%), Positives = 565/993 (56%), Gaps = 61/993 (6%) Query: 14 LPSLRHARLALPPVLGWQSQRYTGARLQGVDVDAALGLPGVHRLVQQRHLLAVIADSDAQ 73 LP++ H R+ PP G S + G L VD + LPGV +V R + V+A+ + Q Sbjct: 215 LPNMLHGRVIRPPYAGHDSGDFVGNSLLAVDESSIAHLPGVVAVVVIRDFVGVVAEREEQ 274 Query: 74 ARQACALLKPRWS-------TPADDDRALR--PRQAHSLYQRGKEEEGLYDLT--LEADY 122 A +A LK W +D +A+R PR ++ +G + G+ + + L Y Sbjct: 275 AIRAAHELKVSWKPFTGKLPDLSDVAQAIRDNPRVQRTVLDQGDVDGGIANASQRLSRSY 334 Query: 123 QWQDGEATLSSPDLVALAAPSGTGMRIDLPFGNPAAIALEVAGLLALPVAQIEVRSHRAP 182 W P ALA + +R+ NP + ++A LLA A+IE+ A Sbjct: 335 LWPYQLHASIGPS-CALADFTAGQIRVWSGTQNPHLLRADLAWLLACDEARIEIIRMEA- 392 Query: 183 ADAREYRAASDVAGVAALLCQQCGEAVSLALTPA-----EAPALSTSLHLRGEFDEDGAL 237 A A DV A LL + V + LT E + + + G + DG++ Sbjct: 393 AGCYGRNCADDVCADAVLLSRAVQRPVRVQLTREQEHVWEPKGTAQLMEIDGGLNADGSV 452 Query: 238 GNTTLDITQDSP-APPLAWLLTETAYALQDAAAIDGAALAPPYDWRSVHVS--------- 287 + S AP LA LLT + + PPYD+ + V+ Sbjct: 453 AAYDFQTSYPSNGAPTLALLLTGAVEPVPALFEMGDRTSIPPYDYEHMRVTINDMTPLVR 512 Query: 288 AAQEASVPVAATCFAQEVFLDEVAQRLGQDPVQYRLAHLPDSHGRDLIRSVAHGARWHPA 347 A+ V FA E ++DE+A G DPV+YRL HL D DL+++ A A+W P Sbjct: 513 ASWMRGVSAMPNSFAHESYIDELAFAAGVDPVEYRLKHLSDPRAIDLVKATAERAQWQPH 572 Query: 348 RQ--QGQRQGGRLRGRGFAYASTIEQHAGQPVQSWSAWVAEVEYDEASGELSVTKVTAGH 405 + Q Q +G LRGRGFAYA I +W+AWVA+V D +GE++VT+V GH Sbjct: 573 TRPMQTQAEGDVLRGRGFAYARYIHSKFPGFGAAWAAWVADVAVDRRTGEVAVTRVVIGH 632 Query: 406 DVRAAGQTPAASPALAQANADRLGQQARLALAHSMHGGRGFDAWSSEAGLPSTLPSSLGL 465 D AG Q + + + +R+ L + A G P L Sbjct: 633 D---AGMMVNPEGVRHQIHGNVIQSTSRV-LKEQVSFEESTVASKEWGGYPI-----LTF 683 Query: 466 PQSTALPTVELVGTPPALQNIQLNAGAAFTLPAAAAISNAVYAATGVRLRQAPFSGEQIR 525 P+ A+ + L P + +G + ++P+AAAI+NA++ ATG+R R+ P + E++R Sbjct: 684 PELPAIDVMML----PRQHEPPMGSGESASVPSAAAIANAIFDATGIRFRELPITAERVR 739 Query: 526 LAL-------NASAPASGAQRWRKYGWLGAAVAAVGATLTL---AMPWRSEIAPIARPDP 575 AL +A APA + + K+ W G+ GA L + A+PWR+EIAP+ P Sbjct: 740 AALGGEGQGPDAPAPAQPSTKRSKW-WFGSLAGVFGAALGMLATALPWRAEIAPVTPPGV 798 Query: 576 DLYSAATIERGRRVALAGDCAVCHTAPGGATNAGGHALQTPFGTVYSTNITPDEHTGIGN 635 +SAA +ERGR+VA AGDCAVCHT GG NAGG A+ TPFGT+YSTNITPD TGIG Sbjct: 799 GSWSAAMLERGRQVAAAGDCAVCHTVSGGKANAGGLAMDTPFGTLYSTNITPDPETGIGR 858 Query: 636 WSYAAFERAMREGIHRDGRHLYPAFPYTAFAKISEADMQSLYAYLMAQPAVASTPPANDL 695 WS+AAFERAMREGI RDGRHLYPAFPYT+F I++ADMQ+LYAYLM+Q V PAN + Sbjct: 859 WSFAAFERAMREGISRDGRHLYPAFPYTSFRNINDADMQALYAYLMSQTPVRQEAPANQM 918 Query: 696 RFPFNLRPLLAGWNTLFHDPQVFQPDPARSDLWNRGAYLVDGAGHCAACHSPRNALGAEK 755 RFPFN RPL+AGWN F +QPDP RS WNRGAYLVDG GHC ACHSPRN +GAEK Sbjct: 919 RFPFNQRPLMAGWNARFLQRGEYQPDPQRSAQWNRGAYLVDGLGHCTACHSPRNLMGAEK 978 Query: 756 GGRHYLGGGTVDGWEAPALTALSKSPTPWTEEELFAYLRRGFSARHGIAAGPMAPVVAEL 815 GG YL GG VDGWEAPAL AL KS TPW+E+ELF YL GFS +HG+AAGPM PVV+EL Sbjct: 979 GGSSYLAGGMVDGWEAPALNALGKSSTPWSEDELFNYLSTGFSEKHGVAAGPMGPVVSEL 1038 Query: 816 AQLPPGDVRAIAHYLASFQSDTTTSPAAPVPASAAQAPSPAELRSRANGQRLFAGACAAC 875 A LP DVRAIAHYL+S + + P +A AP S +NG+R+F GAC C Sbjct: 1039 ATLPKSDVRAIAHYLSSLEGE-------PQALAANAAPQVDTHVSLSNGERVFKGACLGC 1091 Query: 876 HQEGTGPTLFGVKPSLRVNTNLHSDTPDNLVHVILHGIREPANPALGYMPGFANSFSDAQ 935 H +G GP LFGV PS+ VN+N+HSD PDNL+ V+LHGI PA LGYMPGF +S SD Q Sbjct: 1092 HSDGLGPKLFGVSPSMAVNSNVHSDLPDNLLRVVLHGIPTPATRDLGYMPGFKDSLSDRQ 1151 Query: 936 MVDLLAYLRSEFAAGKPAWQGVEASIARSRAMP 968 + DL AYLR FAA KPAWQG+ + A+ RA P Sbjct: 1152 VADLAAYLRHRFAADKPAWQGLASKAAQVRANP 1184 >ref|NP_888321.1| cytochrome [Bordetella bronchiseptica RB50] emb|CAE32273.1| putative cytochrome [Bordetella bronchiseptica RB50] Length = 946 Score = 700 bits (1806), Expect = 0.0, Method: Compositional matrix adjust. Identities = 460/952 (48%), Positives = 573/952 (60%), Gaps = 60/952 (6%) Query: 25 PPVLGWQSQRYTGARLQGVDVDAALGLPGVHRLVQQRHLLAVIADSDAQARQACALLKPR 84 PP W +RYTG R VD +A GLPG+ R++ R + ++A A+QA A L + Sbjct: 37 PPRASWNGERYTGPRAAHVDDNALQGLPGIVRVLVARDFVGIVATRPELAQQAAARLPVQ 96 Query: 85 W-STPADDDRALRPRQAHSLYQRGKEEEGLYDLTLEADYQWQDGEATLSSPDLVALAAPS 143 W + P D AH L+Q G + + LE Y+W ++ S ALA Sbjct: 97 WRAAPPGAD-------AHPLWQHGPADADA-PMALEQRYRWPAADSHGMS--TWALAWWR 146 Query: 144 GTGMRIDLPFGNPAAIALEVAGLLALPVAQIEVRSHRAPADAREYRAASDVAGVAALLCQ 203 + + PA + E+A LL LP + V ++ P AA D A AALL + Sbjct: 147 EGALTVWTAAAAPA-LRRELAALLDLPPDAVRVLAYGVPPGQAADLAALDTAADAALLSR 205 Query: 204 QCGEAVSLALTPAEAPA-LSTSLHLRGEFDEDGALGNTTLDITQDSPAPPLAWLLTETAY 262 G+ V +A +P PA S ++ L +FD G G L I D A L + Sbjct: 206 AVGQPVRVAGSPIAWPAPASGAIRLGADFDAQG--GVAALRIRHDG-----AGLARPSLA 258 Query: 263 ALQDAAAIDGAALAPPYDWRSVHVSAAQEASVP---------VAATCFAQEVFLDEVAQR 313 L A A APPY + +V ++A + ++P AA FA E FLDE A R Sbjct: 259 RLLAGGAGAAPADAPPYRFGAVRLAADSQGTLPPGAARLPGQRAAQVFALESFLDEAAIR 318 Query: 314 LGQDPVQYRLAHLPDSHGRDLIRSVAHGARWHPARQQGQRQGGRLRGRGFAYASTIEQHA 373 G DPV+YRL HL D+ G LIR VA A W Q +GGR GFAYAS I+ Sbjct: 319 AGVDPVEYRLRHLDDARGAALIRQVAQQAGW-----QASGRGGR----GFAYASVIDDSV 369 Query: 374 GQPVQSWSAWVAEVEYDEASGELSVTKVTAGHDVRAAGQTPAASPALAQANADRLGQQAR 433 P++SWSAWVA+V D SG +++T+V GHD+ AA A+P +A R+ Q R Sbjct: 370 DPPLRSWSAWVADVSVDPDSGSVALTRVVVGHDLEAA-----AAPG---QDAPRIEQHLR 421 Query: 434 LALAHSMHGGRGFDAWSSEAGLPSTLPSSLGLPQSTALPTVELVGTPPALQN-IQLNAGA 492 + +D WS A P + LPT E+V AL L Sbjct: 422 DTAGRLLGPPAAYDDWSIPAA-----------PIAGQLPTPEVVRPARALATPAALAWSD 470 Query: 493 AFTLPAAAAISNAVYAATGVRLRQAPFSGEQIRLALNASAPASGAQRWRKYGWLGAAVAA 552 +LPAAAA++NA++ ATG+RLR+ PF+G Q R AL+A+APA R Y WLG AA Sbjct: 471 TASLPAAAAVANAIFDATGIRLREPPFNGAQARRALSAAAPARRGNR-GAYAWLGGIAAA 529 Query: 553 VGATLTLAMPWRSEIAPIARPDPDLYSAATIERGRRVALAGDCAVCHTAPGGATNAGGHA 612 + A PWR IAPIA P+P LYSAA IERGR VA AGDC VCHTAPGGA NAGG A Sbjct: 530 AAGLVVAAWPWRPAIAPIAGPEPGLYSAAAIERGRLVAAAGDCVVCHTAPGGAPNAGGLA 589 Query: 613 LQTPFGTVYSTNITPDEHTGIGNWSYAAFERAMREGIHRDGRHLYPAFPYTAFAKISEAD 672 L TPFG +Y+TNITPD TGIG WSYAAFERAMR+GIHRDGR LYPAFPYT+FAK+SEAD Sbjct: 590 LDTPFGAIYTTNITPDVATGIGQWSYAAFERAMRQGIHRDGRQLYPAFPYTSFAKLSEAD 649 Query: 673 MQSLYAYLMAQPAVASTPPANDLRFPFNLRPLLAGWNTLFHDPQVFQPDPARSDLWNRGA 732 MQ+LYAYLMAQP VA+TPP L FP+NLRPL+AGWN LFHD + +QPDP RS LWNRGA Sbjct: 650 MQALYAYLMAQPPVAATPPPTRLPFPYNLRPLMAGWNALFHDARPYQPDPERSTLWNRGA 709 Query: 733 YLVDGAGHCAACHSPRNALGAEKGG-RHYLGGGTVDGWEAPALTALSKSPTPWTEEELFA 791 YLV GAGHC ACH+PRN+LGAE+GG RH+LGGG +GW+APAL ALS++P PWTE++L+A Sbjct: 710 YLVQGAGHCGACHTPRNSLGAERGGERHFLGGGVAEGWDAPALNALSRAPVPWTEQDLYA 769 Query: 792 YLRRGFSARHGIAAGPMAPVVAELAQLPPGDVRAIAHYLASFQSDTTTSPAAPVPASAAQ 851 YLR GFSARHG+AAGPMAPVV +AQLP DVRA+AHYL+S ++ + + Sbjct: 770 YLRTGFSARHGVAAGPMAPVVQSMAQLPDADVRAMAHYLSSLGPAADSAGVEATVQALER 829 Query: 852 APSPAELRSRANGQRLFAGACAACHQEGTGPTLFGVKPSLRVNTNLHSDTPDNLVHVILH 911 A P NG+RLF GACA CH+ FGV+PSL +NTNLHS PDNL+ VILH Sbjct: 830 ASEPGARLLPPNGERLFQGACAVCHETRHTAPQFGVRPSLALNTNLHSARPDNLIQVILH 889 Query: 912 GIREPANPALGYMPGFANSFSDAQMVDLLAYLRSEFAAGKPAWQGVEASIAR 963 GI EPAN LGYMP F S Q+ +L+ Y+R+ FA G+PAWQ V + + Sbjct: 890 GIVEPANGQLGYMPAFGASLDAGQIAELVQYMRARFAPGEPAWQDVAQRVRK 941 >ref|YP_001267221.1| aldehyde oxidase and xanthine dehydrogenase molybdopterin-binding protein [Pseudomonas putida F1] gb|ABQ78037.1| aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding protein [Pseudomonas putida F1] Length = 1187 Score = 697 bits (1800), Expect = 0.0, Method: Compositional matrix adjust. Identities = 434/992 (43%), Positives = 560/992 (56%), Gaps = 59/992 (5%) Query: 14 LPSLRHARLALPPVLGWQSQRYTGARLQGVDVDAALGLPGVHRLVQQRHLLAVIADSDAQ 73 LP + H R+ PP G S + G L VD + LPGV +V R + V+A+ + Q Sbjct: 215 LPDMLHGRVIRPPYAGHDSGDFVGNSLLAVDESSIAHLPGVVAVVVIRDFVGVVAEREEQ 274 Query: 74 ARQACALLKPRWS-------TPADDDRALR--PRQAHSLYQRGKEEEGLYDLT--LEADY 122 A +A LK W +D +A+R PR ++ +G + G+ + + L Y Sbjct: 275 AIRAAHELKISWKPFTGKLPDLSDVAQAIRDNPRVQRTVLDQGDVDGGIANASQRLSRSY 334 Query: 123 QWQDGEATLSSPDLVALAAPSGTGMRIDLPFGNPAAIALEVAGLLALPVAQIEVRSHRAP 182 W P ALA + +R+ NP + ++A LLA A+IE+ A Sbjct: 335 LWPYQLHASIGPS-CALADFTAGQIRVWSGTQNPHLLRADLAWLLACDEARIEIIRMEA- 392 Query: 183 ADAREYRAASDVAGVAALLCQQCGEAVSLALTPA-----EAPALSTSLHLRGEFDEDGAL 237 A A DV A LL + V + LT E + + + G + DG++ Sbjct: 393 AGCYGRNCADDVCADAVLLSRAVQRPVRVQLTREQEHVWEPKGTAQLMEIDGGLNADGSV 452 Query: 238 GNTTLDITQDSP-APPLAWLLTETAYALQDAAAIDGAALAPPYDWRSVHVS--------- 287 + S AP LA LLT + + PPYD+ + V+ Sbjct: 453 AAYDFQTSYPSNGAPTLALLLTGAVEPVPALFEMGDRTSIPPYDYEHMRVTINDMTPLVR 512 Query: 288 AAQEASVPVAATCFAQEVFLDEVAQRLGQDPVQYRLAHLPDSHGRDLIRSVAHGARWHPA 347 A+ V FA E ++DE+A G DPV+YRL HL D DL+++ A A+W P Sbjct: 513 ASWMRGVSAMPNSFAHESYIDELAFAAGVDPVEYRLKHLSDPRAIDLVKATAERAQWQPH 572 Query: 348 RQ--QGQRQGGRLRGRGFAYASTIEQHAGQPVQSWSAWVAEVEYDEASGELSVTKVTAGH 405 + Q Q +G LRGRGFAYA I +W+AWVA+V D +GE++VT+V GH Sbjct: 573 TRPMQTQAEGDVLRGRGFAYARYIHSKFPGFGAAWAAWVADVAVDRRTGEVAVTRVVIGH 632 Query: 406 DVRAAGQTPAASPALAQANADRLGQQARLALAHSMHGGRGFDAWSSEAGLPSTLPSSLGL 465 D AG Q + + + +R+ L + A G P L Sbjct: 633 D---AGMMVNPEGVRHQIHGNVIQSTSRV-LKEQVSFEESTVASKEWGGYPI-----LTF 683 Query: 466 PQSTALPTVELVGTPPALQNIQLNAGAAFTLPAAAAISNAVYAATGVRLRQAPFSGEQIR 525 P+ A+ + L P + +G + ++P+AAAI+NA++ ATG+R R+ P + E++R Sbjct: 684 PEVPAIDVMML----PRQHEPPMGSGESASVPSAAAIANAIFDATGIRFRELPITAERVR 739 Query: 526 LALNASAPASGAQRW------RKYGWLGAAVAAVGATLTL---AMPWRSEIAPIARPDPD 576 AL A R W G+ GA L + A+PWR+EIAP+ P Sbjct: 740 AALGGEGQGPDAPAPAQPPTKRSKWWFGSLAGVFGAALGMLATALPWRAEIAPVTPPGVG 799 Query: 577 LYSAATIERGRRVALAGDCAVCHTAPGGATNAGGHALQTPFGTVYSTNITPDEHTGIGNW 636 +SAA +ERGR+VA AGDCAVCHT GG NAGG A+ TPFGT+YSTNITPD TGIG W Sbjct: 800 SWSAAMLERGRQVAAAGDCAVCHTVGGGKVNAGGLAMGTPFGTLYSTNITPDPETGIGRW 859 Query: 637 SYAAFERAMREGIHRDGRHLYPAFPYTAFAKISEADMQSLYAYLMAQPAVASTPPANDLR 696 S+AAFERAMREGI RDGRHLYPAFPYT+F I++ADMQ+LYAYLM+Q V PAN +R Sbjct: 860 SFAAFERAMREGISRDGRHLYPAFPYTSFRNINDADMQALYAYLMSQTPVRQEAPANQMR 919 Query: 697 FPFNLRPLLAGWNTLFHDPQVFQPDPARSDLWNRGAYLVDGAGHCAACHSPRNALGAEKG 756 FPFN R L+AGWN LF +QPDP RS WNRGAYLVDG GHC ACHSPRN +GAEKG Sbjct: 920 FPFNQRALMAGWNALFLQRGEYQPDPQRSAQWNRGAYLVDGLGHCTACHSPRNLMGAEKG 979 Query: 757 GRHYLGGGTVDGWEAPALTALSKSPTPWTEEELFAYLRRGFSARHGIAAGPMAPVVAELA 816 G YL GG VDGWEAPAL AL+KS TPW+E+ELF YL GFS +HG+AAGPM PVV+ELA Sbjct: 980 GSSYLAGGMVDGWEAPALNALAKSSTPWSEDELFNYLSTGFSEKHGVAAGPMGPVVSELA 1039 Query: 817 QLPPGDVRAIAHYLASFQSDTTTSPAAPVPASAAQAPSPAELRSRANGQRLFAGACAACH 876 LP DVRAIAHYL+S + P A +A Q SP L +NG+R+F GAC ACH Sbjct: 1040 TLPKSDVRAIAHYLSSLDGE----PQALAANAAPQVDSPVSL---SNGERVFKGACLACH 1092 Query: 877 QEGTGPTLFGVKPSLRVNTNLHSDTPDNLVHVILHGIREPANPALGYMPGFANSFSDAQM 936 +G GP LFGV PS+ VN+N+HSD PDNL+ V+LHGI PA LGYMPGF +S SD Q+ Sbjct: 1093 SDGLGPKLFGVSPSMAVNSNVHSDLPDNLLRVVLHGIPTPATRDLGYMPGFKDSLSDRQV 1152 Query: 937 VDLLAYLRSEFAAGKPAWQGVEASIARSRAMP 968 DL AYLR FAA KPAWQG+ + A+ RA P Sbjct: 1153 ADLAAYLRHRFAADKPAWQGLASKAAQVRANP 1184 >ref|ZP_06640465.1| conserved hypothetical protein [Serratia odorifera DSM 4582] gb|EFE94567.1| conserved hypothetical protein [Serratia odorifera DSM 4582] Length = 1187 Score = 696 bits (1796), Expect = 0.0, Method: Compositional matrix adjust. Identities = 437/1015 (43%), Positives = 577/1015 (56%), Gaps = 73/1015 (7%) Query: 1 VDLQATATATPA-----SLPSLRHARLALPPVLGWQSQRYTGARLQGVDVDAALGLPGVH 55 VD+ A AT LP++ H R+ PP G+ S + G L VD + +PG+ Sbjct: 196 VDIPAKATGETTFVHDMRLPNMLHGRVVRPPYAGYDSGEFVGTSLLAVDERSIAHIPGIV 255 Query: 56 RLVQQRHLLAVIADSDAQARQACALLKPRWS-------TPADDDRAL--RPRQAHSLYQR 106 +LV + ++A+ + QA +A L+ W D +AL P ++ Sbjct: 256 KLVVIEDFIGIVAEREDQAMKAAQALQVSWKDWRRNLPQMTDLTQALHDNPHSTRVVHDT 315 Query: 107 GKEEEGL--YDLTLEADYQWQDGEATLSSPDLVALAAPSGTGMRIDLPFGNPAAIALEVA 164 G + L D Y W P ALA +R+ NP + ++A Sbjct: 316 GNVDAALAALDQRFTRRYLWPYQLHASIGPS-CALADYQPERLRVWSGSQNPHLLRADLA 374 Query: 165 GLLALPVAQIEVRSHRAPADAREYRAASDVAGVAALLCQQCGEAVSLALTPA-----EAP 219 LL P QI++ A A A DV AALL + G V + LT E Sbjct: 375 WLLEYPEQQIDIIRMEA-AGCYGRNCADDVCADAALLSRAVGRPVRVQLTREQEHLWEPK 433 Query: 220 ALSTSLHLRGEFDEDGALGNTTLDITQDSP-APPLAWLLT------ETAYALQDAAAIDG 272 + + + G D DG LG S AP LA LLT AY + D +I Sbjct: 434 GTAQLMEVDGGLDADGQLGAYDFRTYYPSNGAPTLALLLTGRVEPVPVAYEMGDRTSI-- 491 Query: 273 AALAPPYDWRSVHVSAAQEASVPVAA---------TCFAQEVFLDEVAQRLGQDPVQYRL 323 PPYD+ ++ +S A + A+ FA E ++DE+A G DP++YRL Sbjct: 492 ----PPYDYPAMRISIEDMAPIVRASWLRGVSAMPNTFAHESYIDELAVAAGVDPLEYRL 547 Query: 324 AHLPDSHGRDLIRSVAHGARWHP--ARQQGQRQGGRLRGRGFAYASTIEQHAGQPVQSWS 381 ++ D +L+R+ A A W P Q + G LRGRGFAYA I +W+ Sbjct: 548 RYIKDPRAIELMRNTAERAGWQPHTVPMQTAAEDGVLRGRGFAYARYIHSKFPGFGAAWA 607 Query: 382 AWVAEVEYDEASGELSVTKVTAGHDVRAAGQTPAASPALAQANADRLGQQARLALAHSMH 441 AWVA+V D+ SGE++VT++ GHD AG Q + + + +R+ L + Sbjct: 608 AWVADVAIDKTSGEVAVTRIVVGHD---AGMMVNPDGVRHQIHGNVIQSTSRV-LKERVT 663 Query: 442 GGRGFDAWSSEAGLPSTLPSSLGLPQSTALPTVELVGTPPALQNIQLNAGAAFTLPAAAA 501 + + G P L P+ +P VE+V P Q L AG + ++P+AAA Sbjct: 664 FEQSTVSSKEWGGYPI-----LTFPE---VPDVEVVMMPRQ-QEPPLGAGESASVPSAAA 714 Query: 502 ISNAVYAATGVRLRQAPFSGEQIRLALNAS----APASGAQRWRKYGWLGAAVAAVGATL 557 I+NAV+ ATG+R R+ P + +++R ALN APA +Q+ RK+ W G A +GA L Sbjct: 715 IANAVFDATGIRFRELPITADRLREALNGPDRPPAPAKASQKRRKW-WFGGAAGVIGALL 773 Query: 558 TLA---MPWRSEIAPIARPDPDLYSAATIERGRRVALAGDCAVCHTAPGGATNAGGHALQ 614 +A +PWR+EIAP++ P +SAAT+ERGR++A AGDCAVCHTA G TNAGG A++ Sbjct: 774 GVASSALPWRAEIAPVSAPGAGTWSAATLERGRQLAAAGDCAVCHTAADGVTNAGGLAME 833 Query: 615 TPFGTVYSTNITPDEHTGIGNWSYAAFERAMREGIHRDGRHLYPAFPYTAFAKISEADMQ 674 TPFGT+YSTNITPD TGIGNWS+ AF+RAMR+GI RDGRHLYPAFPYTAF+K++E DMQ Sbjct: 834 TPFGTLYSTNITPDVTTGIGNWSFTAFDRAMRQGISRDGRHLYPAFPYTAFSKMTEGDMQ 893 Query: 675 SLYAYLMAQPAVASTPPANDLRFPFNLRPLLAGWNTLFHDPQVFQPDPARSDLWNRGAYL 734 +LYAY+M+QPAV+ T AND+RFPF++RPLLAGWN LF F+PD ++ WNRG+YL Sbjct: 894 ALYAYMMSQPAVSQTNQANDMRFPFSVRPLLAGWNALFLRQGEFKPDVTQTAQWNRGSYL 953 Query: 735 VDGAGHCAACHSPRNALGAEKGGRHYLGGGTVDGWEAPALTALSKSPTPWTEEELFAYLR 794 V+G GHCAACHSPRN LGAEKGG +L G VDGW+APAL L+ + PW+EE+LF YL Sbjct: 954 VNGLGHCAACHSPRNLLGAEKGGTSFLAGAMVDGWQAPALNNLANADKPWSEEQLFQYLS 1013 Query: 795 RGFSARHGIAAGPMAPVVAELAQLPPGDVRAIAHYLASFQSDTTTSPAAPVPASAAQAPS 854 G SA HG+AAGPM PVV+ELA LP D+RA+A+YL S + V A AA AP Sbjct: 1014 SGHSAEHGVAAGPMGPVVSELATLPQSDLRAMANYLISLSEPARLNTQPQVSALAAAAPQ 1073 Query: 855 PAELRSRANGQRLFAGACAACHQEGT-GPTLFGVKPSLRVNTNLHSDTPDNLVHVILHGI 913 S+ G+RLF GAC ACH + GP LFGV P L NTN+ SD PDNL+ VIL GI Sbjct: 1074 ----VSQQAGERLFQGACQACHSASSGGPQLFGVSPDLANNTNIFSDRPDNLIKVILQGI 1129 Query: 914 REPANPALGYMPGFANSFSDAQMVDLLAYLRSEFAAGKPAWQGVEASIARSRAMP 968 +PA LGYMPGF +SFSD Q+ DL+ YLR +A KPAWQ VEA +AR RA P Sbjct: 1130 AQPATTELGYMPGFKDSFSDRQVADLVNYLRQRYAGQKPAWQEVEAQVARLRANP 1184