BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0209.p (160 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774746.1| isoquinoline 1-oxidoreductase subunit alpha ... 325 2e-87 ref|NP_746077.1| (2Fe-2S)-binding domain-containing protein [Pse... 222 1e-56 ref|YP_001669809.1| 2Fe-2S iron-sulfur cluster binding domain-co... 218 2e-55 ref|YP_001267222.1| 2Fe-2S iron-sulfur cluster binding domain-co... 218 2e-55 gb|ADR59523.1| 2Fe-2S iron-sulfur cluster binding domain-contain... 216 8e-55 ref|YP_725435.1| aerobic-type carbon monoxide dehydrogenase smal... 212 1e-53 ref|YP_004684714.1| isoquinoline 1-oxidoreductase subunit alpha ... 211 2e-53 ref|YP_004500705.1| isoquinoline 1-oxidoreductase [Serratia sp. ... 210 5e-53 ref|YP_001478543.1| 2Fe-2S iron-sulfur cluster binding domain-co... 210 6e-53 ref|ZP_06190014.1| 2Fe-2S iron-sulfur cluster binding domain-con... 210 7e-53 >ref|YP_003774746.1| isoquinoline 1-oxidoreductase subunit alpha oxidoreductase [Herbaspirillum seropedicae SmR1] gb|ADJ62838.1| isoquinoline 1-oxidoreductase (alpha subunit) oxidoreductase protein [Herbaspirillum seropedicae SmR1] Length = 160 Score = 325 bits (832), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 160/160 (100%), Positives = 160/160 (100%) Query: 1 MHKQEPITFHVNGVPVSLDIAADAPLLNVLRNDLCLNGPKFGCGLGECGACTVLVDGVAA 60 MHKQEPITFHVNGVPVSLDIAADAPLLNVLRNDLCLNGPKFGCGLGECGACTVLVDGVAA Sbjct: 1 MHKQEPITFHVNGVPVSLDIAADAPLLNVLRNDLCLNGPKFGCGLGECGACTVLVDGVAA 60 Query: 61 RSCVIPLAGVAARHVTTLDGLEQDGRLDPVQQAFIDEQGAQCGYCLNGMIMTIKALLLRS 120 RSCVIPLAGVAARHVTTLDGLEQDGRLDPVQQAFIDEQGAQCGYCLNGMIMTIKALLLRS Sbjct: 61 RSCVIPLAGVAARHVTTLDGLEQDGRLDPVQQAFIDEQGAQCGYCLNGMIMTIKALLLRS 120 Query: 121 PTPSEDEIRHELDFNLCRCGTHVEILRAALRAVELQRGRQ 160 PTPSEDEIRHELDFNLCRCGTHVEILRAALRAVELQRGRQ Sbjct: 121 PTPSEDEIRHELDFNLCRCGTHVEILRAALRAVELQRGRQ 160 >ref|NP_746077.1| (2Fe-2S)-binding domain-containing protein [Pseudomonas putida KT2440] gb|AAN69541.1|AE016587_7 isoquinoline 1-oxidoreductase, putative [Pseudomonas putida KT2440] gb|ACC64339.1| NdhS [Pseudomonas putida KT2440] Length = 157 Score = 222 bits (566), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 107/154 (69%), Positives = 122/154 (79%) Query: 4 QEPITFHVNGVPVSLDIAADAPLLNVLRNDLCLNGPKFGCGLGECGACTVLVDGVAARSC 63 Q I+ VNG PV + D PLL +LRNDLCLNGPK+GCGLGECGACTV++DGVAARSC Sbjct: 2 QTTISLQVNGQPVEVSAMPDTPLLLILRNDLCLNGPKYGCGLGECGACTVIIDGVAARSC 61 Query: 64 VIPLAGVAARHVTTLDGLEQDGRLDPVQQAFIDEQGAQCGYCLNGMIMTIKALLLRSPTP 123 VIPLAG A R++TTL+GL PVQQAFIDEQ AQCGYC+NGMIMT KALL R P P Sbjct: 62 VIPLAGAAGRNITTLEGLGSKAAPHPVQQAFIDEQAAQCGYCMNGMIMTAKALLDRIPEP 121 Query: 124 SEDEIRHELDFNLCRCGTHVEILRAALRAVELQR 157 S+++IR+EL NLCRCGTHVEILRA RA E +R Sbjct: 122 SDEQIRNELSANLCRCGTHVEILRAVRRAAETRR 155 >ref|YP_001669809.1| 2Fe-2S iron-sulfur cluster binding domain-containing protein [Pseudomonas putida GB-1] gb|ABY99473.1| (2Fe-2S)-binding domain protein [Pseudomonas putida GB-1] Length = 157 Score = 218 bits (556), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 105/154 (68%), Positives = 121/154 (78%) Query: 4 QEPITFHVNGVPVSLDIAADAPLLNVLRNDLCLNGPKFGCGLGECGACTVLVDGVAARSC 63 Q I+ +NG PV + D PLL +LRNDLCLNGPK+GCGLGECGACTV++DGVAARSC Sbjct: 2 QTTISLRINGQPVDVSAMPDTPLLLILRNDLCLNGPKYGCGLGECGACTVIIDGVAARSC 61 Query: 64 VIPLAGVAARHVTTLDGLEQDGRLDPVQQAFIDEQGAQCGYCLNGMIMTIKALLLRSPTP 123 VIPLAG A R +TTL+GL PVQQAFIDEQ AQCGYC+NGMIMT KALL R P P Sbjct: 62 VIPLAGAAGRDITTLEGLGNKAAPHPVQQAFIDEQAAQCGYCMNGMIMTAKALLDRIPDP 121 Query: 124 SEDEIRHELDFNLCRCGTHVEILRAALRAVELQR 157 ++++IR+EL NLCRCGTHVEILRA RA E +R Sbjct: 122 TDEQIRNELSGNLCRCGTHVEILRAVRRAAETRR 155 >ref|YP_001267222.1| 2Fe-2S iron-sulfur cluster binding domain-containing protein [Pseudomonas putida F1] gb|ABQ78038.1| (2Fe-2S)-binding domain protein [Pseudomonas putida F1] Length = 157 Score = 218 bits (555), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 106/154 (68%), Positives = 120/154 (77%) Query: 4 QEPITFHVNGVPVSLDIAADAPLLNVLRNDLCLNGPKFGCGLGECGACTVLVDGVAARSC 63 Q I+ VNG PV + D PLL +LRNDL LNGPK+GCGLGECGACTV++DGVAARSC Sbjct: 2 QTTISLQVNGQPVEVSAMPDTPLLLILRNDLSLNGPKYGCGLGECGACTVIIDGVAARSC 61 Query: 64 VIPLAGVAARHVTTLDGLEQDGRLDPVQQAFIDEQGAQCGYCLNGMIMTIKALLLRSPTP 123 VIPLAG A R +TTL+GL PVQQAFIDEQ AQCGYC+NGMIMT KALL R P P Sbjct: 62 VIPLAGAAGRDITTLEGLGSKAAPHPVQQAFIDEQAAQCGYCMNGMIMTAKALLDRIPEP 121 Query: 124 SEDEIRHELDFNLCRCGTHVEILRAALRAVELQR 157 S+++IR+EL NLCRCGTHVEILRA RA E +R Sbjct: 122 SDEQIRNELSGNLCRCGTHVEILRAVRRAAETRR 155 >gb|ADR59523.1| 2Fe-2S iron-sulfur cluster binding domain-containing protein [Pseudomonas putida BIRD-1] Length = 157 Score = 216 bits (550), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 106/154 (68%), Positives = 120/154 (77%) Query: 4 QEPITFHVNGVPVSLDIAADAPLLNVLRNDLCLNGPKFGCGLGECGACTVLVDGVAARSC 63 Q I+ VNG PV + D PLL +LRNDLCLNGPK+GCGLGECGACTV++DGVAARSC Sbjct: 2 QITISLQVNGQPVEVSAMPDTPLLLILRNDLCLNGPKYGCGLGECGACTVIIDGVAARSC 61 Query: 64 VIPLAGVAARHVTTLDGLEQDGRLDPVQQAFIDEQGAQCGYCLNGMIMTIKALLLRSPTP 123 VIPLAG A R +TTL+GL PVQQAFIDEQ AQCGYC+NGMIMT KALL R P Sbjct: 62 VIPLAGAAGRDITTLEGLGSKAAPHPVQQAFIDEQAAQCGYCMNGMIMTAKALLDRITDP 121 Query: 124 SEDEIRHELDFNLCRCGTHVEILRAALRAVELQR 157 S+++IR+EL NLCRCGTHVEILRA RA E +R Sbjct: 122 SDEQIRNELSGNLCRCGTHVEILRAVRRAAETRR 155 >ref|YP_725435.1| aerobic-type carbon monoxide dehydrogenase small subunit [Ralstonia eutropha H16] emb|CAJ92067.1| Aerobic-type carbon monoxide dehydrogenase homolog, small subunit [Ralstonia eutropha H16] Length = 176 Score = 212 bits (540), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 102/157 (64%), Positives = 119/157 (75%) Query: 1 MHKQEPITFHVNGVPVSLDIAADAPLLNVLRNDLCLNGPKFGCGLGECGACTVLVDGVAA 60 M+ P+T VN +L +A D PLL +LRNDLC NGPK+GCGLG+CGACTVLVDG+ A Sbjct: 12 MNTPRPLTLQVNHAEHTLSVAPDTPLLYILRNDLCCNGPKYGCGLGQCGACTVLVDGMPA 71 Query: 61 RSCVIPLAGVAARHVTTLDGLEQDGRLDPVQQAFIDEQGAQCGYCLNGMIMTIKALLLRS 120 R+CV+P+ V VTTL+GL D + DPVQQAFIDEQ AQCGYCLNGMIMT KALL ++ Sbjct: 72 RACVLPVRAVVGHAVTTLEGLGTDAQPDPVQQAFIDEQAAQCGYCLNGMIMTAKALLAQN 131 Query: 121 PTPSEDEIRHELDFNLCRCGTHVEILRAALRAVELQR 157 P P E +IR L FNLCRCGTHVEI+RA RA LQR Sbjct: 132 PDPDEAQIREALRFNLCRCGTHVEIVRAVQRAAMLQR 168 >ref|YP_004684714.1| isoquinoline 1-oxidoreductase subunit alpha [Cupriavidus necator N-1] gb|AEI76233.1| isoquinoline 1-oxidoreductase subunit alpha [Cupriavidus necator N-1] Length = 165 Score = 211 bits (538), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 102/157 (64%), Positives = 119/157 (75%) Query: 1 MHKQEPITFHVNGVPVSLDIAADAPLLNVLRNDLCLNGPKFGCGLGECGACTVLVDGVAA 60 M+ P+T VN +L +A D PLL +LRNDLC NGPK+GCGLG+CGACTVLVDG+ A Sbjct: 1 MNTPRPLTLQVNHAEHTLSVAPDTPLLYILRNDLCCNGPKYGCGLGQCGACTVLVDGMPA 60 Query: 61 RSCVIPLAGVAARHVTTLDGLEQDGRLDPVQQAFIDEQGAQCGYCLNGMIMTIKALLLRS 120 R+CV+P+ V VTTL+GL D + DPVQQAFIDEQ AQCGYCLNGMIMT KALL ++ Sbjct: 61 RACVLPVRAVVGHAVTTLEGLGTDAQPDPVQQAFIDEQAAQCGYCLNGMIMTAKALLAQN 120 Query: 121 PTPSEDEIRHELDFNLCRCGTHVEILRAALRAVELQR 157 P P E +IR L FNLCRCGTHVEI+RA RA LQR Sbjct: 121 PDPDEAQIREALRFNLCRCGTHVEIVRAVQRAAVLQR 157 >ref|YP_004500705.1| isoquinoline 1-oxidoreductase [Serratia sp. AS12] ref|YP_004505658.1| isoquinoline 1-oxidoreductase [Serratia sp. AS9] gb|AEF45397.1| Isoquinoline 1-oxidoreductase [Serratia sp. AS9] gb|AEF50348.1| Isoquinoline 1-oxidoreductase [Serratia sp. AS12] gb|AEG28055.1| Isoquinoline 1-oxidoreductase [Serratia sp. AS13] Length = 179 Score = 210 bits (535), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 104/160 (65%), Positives = 120/160 (75%) Query: 1 MHKQEPITFHVNGVPVSLDIAADAPLLNVLRNDLCLNGPKFGCGLGECGACTVLVDGVAA 60 M + P+ VNG + + D PLL VLRNDL LNGPK+GCGLGECGACTVLVDG+AA Sbjct: 16 MLTEHPLLLSVNGKSIHTQVMTDTPLLLVLRNDLALNGPKYGCGLGECGACTVLVDGIAA 75 Query: 61 RSCVIPLAGVAARHVTTLDGLEQDGRLDPVQQAFIDEQGAQCGYCLNGMIMTIKALLLRS 120 RSCVIP GVA R +TTL+GL L PVQ+AFI+EQ AQCGYCLNGMIMT KALL R+ Sbjct: 76 RSCVIPALGVADRAITTLEGLGDRDHLHPVQRAFIEEQAAQCGYCLNGMIMTTKALLDRN 135 Query: 121 PTPSEDEIRHELDFNLCRCGTHVEILRAALRAVELQRGRQ 160 P+PS+ EIR L NLCRCGTH+EILRA RA+ L R + Sbjct: 136 PSPSDGEIRQALSGNLCRCGTHIEILRAVQRAIILCRSEE 175 >ref|YP_001478543.1| 2Fe-2S iron-sulfur cluster binding domain-containing protein [Serratia proteamaculans 568] gb|ABV41415.1| (2Fe-2S)-binding domain protein [Serratia proteamaculans 568] Length = 180 Score = 210 bits (534), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 104/157 (66%), Positives = 120/157 (76%) Query: 4 QEPITFHVNGVPVSLDIAADAPLLNVLRNDLCLNGPKFGCGLGECGACTVLVDGVAARSC 63 + P+ VNG + + AD PLL VLRNDL LNGPK+GCGLGECGACTVLVDG+AARSC Sbjct: 19 EHPLMLSVNGENIHTRVMADTPLLLVLRNDLALNGPKYGCGLGECGACTVLVDGIAARSC 78 Query: 64 VIPLAGVAARHVTTLDGLEQDGRLDPVQQAFIDEQGAQCGYCLNGMIMTIKALLLRSPTP 123 VIP G+ R VTTL+GL RL PVQ+AFI+EQ AQCGYCLNGMIMT KALL R+P+P Sbjct: 79 VIPALGMTGRVVTTLEGLGDRDRLHPVQRAFIEEQAAQCGYCLNGMIMTTKALLDRNPSP 138 Query: 124 SEDEIRHELDFNLCRCGTHVEILRAALRAVELQRGRQ 160 S+ EIR L NLCRCGTH+EILRA RA+ L R + Sbjct: 139 SDREIRQALSGNLCRCGTHIEILRAVQRAIILCRSEE 175 >ref|ZP_06190014.1| 2Fe-2S iron-sulfur cluster binding domain-containing protein [Serratia odorifera 4Rx13] gb|EFA18316.1| 2Fe-2S iron-sulfur cluster binding domain-containing protein [Serratia odorifera 4Rx13] Length = 179 Score = 210 bits (534), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 102/157 (64%), Positives = 120/157 (76%) Query: 4 QEPITFHVNGVPVSLDIAADAPLLNVLRNDLCLNGPKFGCGLGECGACTVLVDGVAARSC 63 + P+ VNG + + D PLL VLRNDL LNGPK+GCGLGECGACTVL+DG+AARSC Sbjct: 19 EHPLLLSVNGKSIHTQVMTDTPLLLVLRNDLALNGPKYGCGLGECGACTVLIDGIAARSC 78 Query: 64 VIPLAGVAARHVTTLDGLEQDGRLDPVQQAFIDEQGAQCGYCLNGMIMTIKALLLRSPTP 123 VIP GVA R +TTL+GL + L PVQ+AFI+EQ AQCGYCLNGMIMT KALL R+P+P Sbjct: 79 VIPALGVADRAITTLEGLGERDHLHPVQRAFIEEQAAQCGYCLNGMIMTTKALLDRNPSP 138 Query: 124 SEDEIRHELDFNLCRCGTHVEILRAALRAVELQRGRQ 160 S+ EIR L NLCRCGTH+EILRA RA+ L R + Sbjct: 139 SDGEIRQALSGNLCRCGTHIEILRAVQRAIILCRNEE 175