BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0200.p (346 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774755.1| outer membrane porin, OmpC family protein [H... 686 0.0 ref|YP_552978.1| OmpC family outer membrane porin [Burkholderia ... 322 8e-86 ref|ZP_06844426.1| porin Gram-negative type [Burkholderia sp. Ch... 320 2e-85 ref|ZP_03263996.1| outer membrane porin, OmpC family [Burkholder... 246 3e-63 ref|YP_001565451.1| porin [Delftia acidovorans SPH-1] >gi|160365... 214 2e-53 ref|YP_004487744.1| porin [Delftia sp. Cs1-4] >gi|333744212|gb|A... 214 2e-53 ref|ZP_02379922.1| porin, Gram-negative type [Burkholderia ubone... 208 1e-51 ref|YP_004350043.1| outer membrane porin, OmpC family protein [B... 206 4e-51 ref|YP_368624.1| outer membrane protein, (porin) [Burkholderia s... 204 2e-50 ref|YP_004349341.1| Porin, Gram-negative type [Burkholderia glad... 202 7e-50 >ref|YP_003774755.1| outer membrane porin, OmpC family protein [Herbaspirillum seropedicae SmR1] gb|ADJ62847.1| outer membrane porin, OmpC family protein [Herbaspirillum seropedicae SmR1] Length = 346 Score = 686 bits (1769), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/346 (99%), Positives = 345/346 (99%) Query: 1 MKKAWAVGVAGLLCAGGALAQSNVTLYGVIDTYMGYTNATGKGSVASLDSGGYQASRVGF 60 MKKAWAVGVA LLCAGGALAQSNVTLYGVIDTYMGYTNATGKGSVASLDSGGYQASRVGF Sbjct: 1 MKKAWAVGVASLLCAGGALAQSNVTLYGVIDTYMGYTNATGKGSVASLDSGGYQASRVGF 60 Query: 61 KGSEDLGGGLRANFQMENGFASDSGAMHDSTRLFNRQSWVGLGNELGELRLGRQNSPGFL 120 KGSEDLGGGLRANFQMENGFASDSGAMHDSTRLFNRQSWVGLGNELGELRLGRQNSPGFL Sbjct: 61 KGSEDLGGGLRANFQMENGFASDSGAMHDSTRLFNRQSWVGLGNELGELRLGRQNSPGFL 120 Query: 121 MIARLDAFAGATYASFLNNVSAYTPRYDNVIGYLSPVMRGFRVQAYYGLGEQTAPRNGLS 180 MIARLDAFAGATYASFLNNVSAYTPRYDNVIGYLSPVMRGFRVQAYYGLGEQTAPRNGLS Sbjct: 121 MIARLDAFAGATYASFLNNVSAYTPRYDNVIGYLSPVMRGFRVQAYYGLGEQTAPRNGLS 180 Query: 181 TAMLAGEYESGPLYLGVSSSAQNSANDNITIRSTFAGGAYDYGSGKVFLGYYRGNNLGAA 240 TAMLAGEYESGPLYLGVSSSAQNSANDNITIRSTFAGGAYDYGSGKVFLGYYRGNNLGAA Sbjct: 181 TAMLAGEYESGPLYLGVSSSAQNSANDNITIRSTFAGGAYDYGSGKVFLGYYRGNNLGAA 240 Query: 241 ASANTPGSYYSAYSLSANYRLTGQATLGAGYGWAKDSTGAGRNARQFSLIGTYDLSRRTM 300 ASANTPGSYYSAYSLSANYRLTGQATLGAGYGWAKDSTGAGRNARQFSLIGTYDLSRRTM Sbjct: 241 ASANTPGSYYSAYSLSANYRLTGQATLGAGYGWAKDSTGAGRNARQFSLIGTYDLSRRTM 300 Query: 301 LYATYAHLANNNGASFSLAGAAPITKNAPVSGGTVNGVQVGIRHLF 346 LYATYAHLANNNGASFSLAGAAPITKNAPVSGGTVNGVQVGIRHLF Sbjct: 301 LYATYAHLANNNGASFSLAGAAPITKNAPVSGGTVNGVQVGIRHLF 346 >ref|YP_552978.1| OmpC family outer membrane porin [Burkholderia xenovorans LB400] gb|ABE33628.1| outer membrane porin, OmpC family [Burkholderia xenovorans LB400] Length = 349 Score = 322 bits (824), Expect = 8e-86, Method: Compositional matrix adjust. Identities = 174/350 (49%), Positives = 228/350 (65%), Gaps = 5/350 (1%) Query: 1 MKKAWAVGVAGLLCAGGAL----AQSNVTLYGVIDTYMGYTNATGKGSVASLDSGGYQAS 56 M+K A+ + L A G + A++ VTLYG++DTY+GYTNA GKG+ ++ SGG AS Sbjct: 1 MRK-MALACSAALVALGTVTVTPARAEVTLYGILDTYLGYTNAGGKGAQTAMQSGGLSAS 59 Query: 57 RVGFKGSEDLGGGLRANFQMENGFASDSGAMHDSTRLFNRQSWVGLGNELGELRLGRQNS 116 RVG +GSEDLGGGLRA F +ENG ++SGA DST F+R +WVGLG GE R GRQNS Sbjct: 60 RVGIRGSEDLGGGLRATFDLENGILTNSGAATDSTLAFSRSAWVGLGTPYGEFRFGRQNS 119 Query: 117 PGFLMIARLDAFAGATYASFLNNVSAYTPRYDNVIGYLSPVMRGFRVQAYYGLGEQTAPR 176 LM ++ DAF+G TY SFL+N S + RYDN+I Y SP + GF A LG QT+P Sbjct: 120 VLLLMHSKFDAFSGGTYGSFLHNASTFVFRYDNMITYWSPNIAGFTFSAGASLGGQTSPH 179 Query: 177 NGLSTAMLAGEYESGPLYLGVSSSAQNSANDNITIRSTFAGGAYDYGSGKVFLGYYRGNN 236 + L+ + + +Y+ GPLYLGVS + QN AN I ++TFAGG+Y +GS + GYYRGNN Sbjct: 180 DALNAYVGSIDYQRGPLYLGVSHAEQNGANGKINTKTTFAGGSYQFGSLTGYFGYYRGNN 239 Query: 237 LGAAASANTPGSYYSAYSLSANYRLTGQATLGAGYGWAKDSTGAGRNARQFSLIGTYDLS 296 LG+ S N G Y+S YSLS Y +T L AG G+A+DS+G NA + S+ Y S Sbjct: 240 LGSNISTNVEGKYHSVYSLSTTYSVTPALRLAAGVGYAQDSSGQHNNAGEVSVGAFYSFS 299 Query: 297 RRTMLYATYAHLANNNGASFSLAGAAPITKNAPVSGGTVNGVQVGIRHLF 346 +RT++Y T L N +GA+++L PIT N P G V G Q+GI H F Sbjct: 300 KRTLVYGTLERLVNRHGATYALIANGPITPNTPTRGEGVTGAQLGILHSF 349 >ref|ZP_06844426.1| porin Gram-negative type [Burkholderia sp. Ch1-1] gb|EFG67913.1| porin Gram-negative type [Burkholderia sp. Ch1-1] Length = 349 Score = 320 bits (820), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 173/350 (49%), Positives = 229/350 (65%), Gaps = 5/350 (1%) Query: 1 MKKAWAVGVAGLLCAGGAL----AQSNVTLYGVIDTYMGYTNATGKGSVASLDSGGYQAS 56 M+K A+ + L A G + A++ VTLYG++DTY+GYTNA GKG+ ++ SGG AS Sbjct: 1 MRK-MALACSAALVALGTVTVTPARAEVTLYGILDTYLGYTNAGGKGAQTAMQSGGLSAS 59 Query: 57 RVGFKGSEDLGGGLRANFQMENGFASDSGAMHDSTRLFNRQSWVGLGNELGELRLGRQNS 116 RVG +GSEDLGGGLRA F +ENG ++SGA DST F+R +WVGLG GE R GRQNS Sbjct: 60 RVGIRGSEDLGGGLRATFDLENGILTNSGAATDSTLAFSRSAWVGLGTPYGEFRFGRQNS 119 Query: 117 PGFLMIARLDAFAGATYASFLNNVSAYTPRYDNVIGYLSPVMRGFRVQAYYGLGEQTAPR 176 LM ++ DAF+G TY SFL+N S ++ RYDN+I Y SP + GF A LG QT+P Sbjct: 120 VLLLMHSKFDAFSGGTYGSFLHNASTFSFRYDNMITYWSPNIAGFTFSAGASLGGQTSPH 179 Query: 177 NGLSTAMLAGEYESGPLYLGVSSSAQNSANDNITIRSTFAGGAYDYGSGKVFLGYYRGNN 236 + L+ + + +Y+ GPLYLGVS + QN AN ++TFAGG+Y +GS + GYYRGNN Sbjct: 180 DALNAYVGSIDYQRGPLYLGVSHAEQNGANGKNITKTTFAGGSYQFGSLTGYFGYYRGNN 239 Query: 237 LGAAASANTPGSYYSAYSLSANYRLTGQATLGAGYGWAKDSTGAGRNARQFSLIGTYDLS 296 LG+ S N G Y+S YSLS Y +T L AG G+A+DS+G NA + S+ Y S Sbjct: 240 LGSNISTNVQGKYHSVYSLSTTYNVTPALRLAAGVGYAQDSSGQDNNAGEVSVGAFYSFS 299 Query: 297 RRTMLYATYAHLANNNGASFSLAGAAPITKNAPVSGGTVNGVQVGIRHLF 346 +RT++Y T+ L N +GA+++L PIT N P G V G Q+GI H F Sbjct: 300 KRTLVYGTFERLVNRHGATYALIANGPITPNTPTRGEGVTGAQLGILHSF 349 >ref|ZP_03263996.1| outer membrane porin, OmpC family [Burkholderia sp. H160] gb|EEA04370.1| outer membrane porin, OmpC family [Burkholderia sp. H160] Length = 374 Score = 246 bits (629), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 146/361 (40%), Positives = 205/361 (56%), Gaps = 23/361 (6%) Query: 9 VAGLLCAGGALAQSNVTLYGVIDTYMGYTNATGKG---SVASLDSGGYQASRVGFKGSED 65 A ++ + A+AQS+VTLYGV+D + GY N G ++A L + G SR G +G+ED Sbjct: 14 CAAIIVSAPAMAQSSVTLYGVLDVFAGYQNTKVSGKTTTLAVLGNNGEMTSRWGLRGTED 73 Query: 66 LGGGLRANFQMENGFASDSGAMHDSTRLFNRQSWVGLGNELGELRLGRQNSPGFLMIARL 125 LGGG NF +ENGF +G + +S R F+RQ+WVG+ GELRLGRQNSP F + Sbjct: 74 LGGGYHVNFALENGFDPGTGKVQNSFRFFDRQAWVGVSGGFGELRLGRQNSPMFAYSGNM 133 Query: 126 DAFAGATYASFLNNVSAYTPRYDNVIGYLSPVMRGFRVQAYYGLGEQTAPRNGLSTAMLA 185 DAF+ ATYAS NN S + R DN I ++SP G +V+ +Y +G Q G + Sbjct: 134 DAFSAATYASGFNNFSNWQARVDNDIAWISPKFAGTQVELHYSVGGQPGTLAGNAVYQAG 193 Query: 186 GEYESGPLYLGVSSSAQNSANDNITIRSTFAGGAYDYGSGKVFLGYYRGNNLGAAAS--- 242 + GP+Y ++ +A + ++ AGG DYG G+++LGY+R N + +A + Sbjct: 194 VQTAQGPVYFALAYLNAANATVSNRVQEFMAGGNVDYGWGRIYLGYFRANAVISATTGNA 253 Query: 243 ---------------ANTPGSYYSAYSLSANYRLTGQATLGAGYGWAKDSTGAGRNARQF 287 NTPG ++S YSLSA+YR + ++GAG + KDST G +A Q+ Sbjct: 254 LSNPAGKYDPAVGPVGNTPGDWHSTYSLSADYRFSPFFSVGAGAAYTKDSTHLGNDAFQY 313 Query: 288 SLIGTYDLSRRTMLYATYAHLANNNGASFSLAGAAPITKN--APVSGGTVNGVQVGIRHL 345 I YDLS+ T LY T + L N A F +AGA+ T + P G + GVQ GIRHL Sbjct: 314 GAIANYDLSKATRLYGTISELKNYGTAQFKMAGASITTGSFLTPGPGQSQFGVQFGIRHL 373 Query: 346 F 346 F Sbjct: 374 F 374 >ref|YP_001565451.1| porin [Delftia acidovorans SPH-1] gb|ABX37066.1| porin Gram-negative type [Delftia acidovorans SPH-1] Length = 383 Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 143/357 (40%), Positives = 198/357 (55%), Gaps = 32/357 (8%) Query: 17 GALAQSNVTLYGVIDTYMGYTNATGKGSVASLDSGGYQASRVGFKGSEDLGGGLRANFQM 76 GA AQS+VT+YG +D Y+ + ++ S+ +L+ G SR+GF+G EDLGGGL A FQ+ Sbjct: 32 GAHAQSSVTIYGSVDQYINHMRSSSGASMTTLEDGALLRSRLGFRGHEDLGGGLYAKFQL 91 Query: 77 ENGFASDSGAMHDSTRLFNRQSWVGLGNELGELRLGRQNSPGFLMIARLDAFAGATYASF 136 E G +D+G DSTR F+RQSWVGLG GE+RLGRQN+ F +D F T S Sbjct: 92 EMGINADNGTQADSTRGFDRQSWVGLGGGWGEVRLGRQNTVIFGRGDYID-FTSRTLGSM 150 Query: 137 LNNVSAYTPRYDNVIGYLSPVMRGFRVQAYYGLGEQTAPRNGLSTAMLAGEYESGPLYLG 196 +NN R+DN I Y SP M GF +A+Y + E AP + L +Y +GP +G Sbjct: 151 VNNFGV-PSRFDNDISYTSPRMAGFLFEAHYAMAETGAPAR-QAIYQLGLDYLNGPYRVG 208 Query: 197 ----VSSSAQNSA-NDNITIRSTFAGGAYDYGSGKVFLGYYRGNNLGAAASANTPGS--- 248 + + QN+A D + + +A YDYG GKV L + R NN A ++ N G+ Sbjct: 209 YAGLYARAPQNAAYTDAVRYDNLYAN--YDYGKGKVQLAFVRSNNSTAGSAGNNTGTVLG 266 Query: 249 ---------------YYSAYSLSANYRLTGQATLGAGYGWAKDSTGAGRNARQFSLIGTY 293 +Y + LSA+YR+T Q +GA +G +D + +GR A ++ Y Sbjct: 267 NVGGLVAGTNADVRRFYRVWQLSADYRVTPQLRVGALWGRIQDGSDSGRGASGGAVAAYY 326 Query: 294 DLSRRTMLYATYAHLANNNGASFSLA---GAAP-ITKNAPVSGGTVNGVQVGIRHLF 346 DLS+RTMLYA L N+ A F LA G P T V+G T+ GVQ+G+ H F Sbjct: 327 DLSKRTMLYAVAEQLKNDRNAGFRLAASGGMKPNFTSADDVNGRTIKGVQLGVLHRF 383 >ref|YP_004487744.1| porin [Delftia sp. Cs1-4] gb|AEF89389.1| porin Gram-negative type [Delftia sp. Cs1-4] Length = 383 Score = 214 bits (544), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 142/355 (40%), Positives = 193/355 (54%), Gaps = 28/355 (7%) Query: 17 GALAQSNVTLYGVIDTYMGYTNATGKGSVASLDSGGYQASRVGFKGSEDLGGGLRANFQM 76 GA AQS+VT+YG +D Y+ + ++ S+ +L+ G SR+GF+G EDLGGGL A FQ+ Sbjct: 32 GAQAQSSVTIYGSVDQYINHMRSSSGASMTTLEDGALLRSRLGFRGQEDLGGGLYAKFQL 91 Query: 77 ENGFASDSGAMHDSTRLFNRQSWVGLGNELGELRLGRQNSPGFLMIARLDAFAGATYASF 136 E G +D+G DSTR F+RQSWVGLG GE+RLGRQN+ F +D F T S Sbjct: 92 EMGINADNGTQADSTRGFDRQSWVGLGGGWGEVRLGRQNTVIFGRGDYID-FTSRTLGSM 150 Query: 137 LNNVSAYTPRYDNVIGYLSPVMRGFRVQAYYGLGEQTAPRNGLSTAMLAGEYESGPL--- 193 +NN R+DN I Y SP M GF +A+Y + E AP + L +Y + P Sbjct: 151 VNNFGV-PSRFDNDISYTSPRMAGFLFEAHYAMAETGAPAR-QAIYQLGLDYLNAPYRVG 208 Query: 194 YLGVSSSAQNSANDNITIRSTFAGGAYDYGSGKVFLGYYRGNNLGAAASANTPGS----- 248 Y G+ + A SA +R YDYG GKV L + R NN A ++ N G+ Sbjct: 209 YAGLYARAPQSAAYTDAVRYDNLYANYDYGKGKVQLAFVRSNNSTAGSAGNNTGTVLGNV 268 Query: 249 -------------YYSAYSLSANYRLTGQATLGAGYGWAKDSTGAGRNARQFSLIGTYDL 295 +Y + LSA+YR+T Q +GA +G +D + +GR A ++ YDL Sbjct: 269 GGLVAGTNADVRRFYRVWQLSADYRVTPQLRVGALWGRIQDGSDSGRGASGGAVAAYYDL 328 Query: 296 SRRTMLYATYAHLANNNGASFSLA---GAAP-ITKNAPVSGGTVNGVQVGIRHLF 346 S+RTMLYA L N+ A F LA G P T V+G T+ GVQ+G+ H F Sbjct: 329 SKRTMLYAVAEQLKNDRNAGFRLAASGGMKPNFTSADDVNGRTIKGVQLGVLHRF 383 >ref|ZP_02379922.1| porin, Gram-negative type [Burkholderia ubonensis Bu] Length = 356 Score = 208 bits (529), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 129/332 (38%), Positives = 176/332 (53%), Gaps = 8/332 (2%) Query: 15 AGGALAQSNVTLYGVIDTYMGYTNATGKGSVASLDSGGYQASRVGFKGSEDLGGGLRANF 74 +G ALA VTLYGVID + Y N TG G A++ SGG SR G KG+ED+GGG F Sbjct: 33 SGAALAGDGVTLYGVIDEFAQYVN-TGNGYTAAIGSGGQWGSRFGVKGAEDIGGGQTIEF 91 Query: 75 QMENGFASDSGAMHDSTRLFNRQSWVGLGNELGELRLGRQNSPGFLMIARLDAFAGATYA 134 +ENGF ++G + DS R+FNRQ+WVG+ + G+LR GRQNSP F DAF G T A Sbjct: 92 DLENGFNPNNGTLADSGRMFNRQAWVGVAGQWGKLRAGRQNSPLFNDQGGQDAFGGVTQA 151 Query: 135 SFLNNVSAYTPRYDNVIGYLSPVMRGFRVQAYYGLGEQTAPRNGLSTAMLAGEYESGPLY 194 S ++N++ + R N + Y SP + GF+ Y+G G+ R+ S+ YE GP Sbjct: 152 SGMDNLTVFAFRTSNTVSYRSPEIAGFQAGVYFGFGDAGGVRSAGSSRQFDVTYEHGPFA 211 Query: 195 LGVSSSAQNSANDNITIRSTFAGGAYDYGSGKVFLGYYRGNNLGAAASANTPGSYYSAYS 254 V+ +A T R+ AG +Y G V+ G+ +A + G Y Sbjct: 212 AFVAGQWLRNATAATTDRTIMAGASYAIGKATVYGGF-------SAVKWDAIGIDSRVYG 264 Query: 255 LSANYRLTGQATLGAGYGWAKDSTGAGRNARQFSLIGTYDLSRRTMLYATYAHLANNNGA 314 LS Y+L + GY + D + G NA Q L+ YDLS+RT Y ++L N N A Sbjct: 265 LSVKYQLNPANVVALGYAYLHDQSSQGNNADQVGLMYEYDLSKRTSFYGALSYLRNRNQA 324 Query: 315 SFSLAGAAPITKNAPVSGGTVNGVQVGIRHLF 346 ++LAGAA G GVQ+G+ H F Sbjct: 325 GYTLAGAANPGLPLAYPGANARGVQLGVVHRF 356 >ref|YP_004350043.1| outer membrane porin, OmpC family protein [Burkholderia gladioli BSR3] gb|AEA64531.1| outer membrane porin, OmpC family protein [Burkholderia gladioli BSR3] Length = 386 Score = 206 bits (525), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 140/357 (39%), Positives = 206/357 (57%), Gaps = 27/357 (7%) Query: 6 AVGVAGLLCAGGALAQSNVTLYGVIDTYMGYTNATGKGSVASLDSGGYQASRVGFKGSED 65 AV +A ++ AG A AQS+VTLYGVIDT++ +A+GK SV +DS G ASR G +G+E+ Sbjct: 41 AVAMACVVPAG-ARAQSSVTLYGVIDTFVTNIHASGKPSVTRMDSSGLWASRWGVRGTEE 99 Query: 66 LGGGLRANFQMENGFASDSGAMHDSTRLFNRQSWVGLGNE-LGELRLGRQNSPGFLMIAR 124 LGGG + F +ENGF S+ G+ D+ R NRQ+WVG+ ++ GE+RLGRQNSP ++M R Sbjct: 100 LGGGYKTTFALENGFNSNDGSQADANRFLNRQAWVGIASDRYGEIRLGRQNSPQWVMNGR 159 Query: 125 LDAFAGATYASFLNNVSAYTPRYDNVIGYLSPVMRGFRVQAYYGL-------GEQTAPRN 177 +DAF AT AS NN + R DN IGYLSPV+ GF+ +YGL G P++ Sbjct: 160 IDAFYAATQASGWNNFYGGSVRVDNAIGYLSPVVDGFK---FYGLYARGAVSGGSILPQD 216 Query: 178 -GLSTAMLAGEYESGPLYLGVSSSAQNSANDNITIRSTFAGGAYDYGSG-KVFLGYYRGN 235 G ++ EYE GPLY+G + + T++ GG+Y +G +V+L Sbjct: 217 QGNQNYHVSLEYERGPLYIGTNYENIRNETLKFTMKRATLGGSYKFGDHWQVYLA----- 271 Query: 236 NLGAAASANTPGSYYSAYSLSANYRLTGQATLGAGYGWAKDS-TGAGR-NARQFSLIGTY 293 A+ ++ + + S Y + + GY + +D +G+G NA Q + +Y Sbjct: 272 --ADDEKASDDSTHTNLLAASFAYSFSVASRFALGYAYLRDHVSGSGHGNASQIGAMYSY 329 Query: 294 DLSRRTMLYATYAHLANNNGAS-FSLAGAAPITKNAPVS---GGTVNGVQVGIRHLF 346 LS+ T +YATYA+L S L+GAA + A ++ GG++NGV +G+ H F Sbjct: 330 ALSKATTIYATYAYLDQQGTRSNLVLSGAAVVESAARIASTPGGSINGVALGLVHFF 386 >ref|YP_368624.1| outer membrane protein, (porin) [Burkholderia sp. 383] gb|ABB07980.1| outer membrane protein, (porin) [Burkholderia sp. 383] Length = 356 Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 129/340 (37%), Positives = 177/340 (52%), Gaps = 8/340 (2%) Query: 7 VGVAGLLCAGGALAQSNVTLYGVIDTYMGYTNATGKGSVASLDSGGYQASRVGFKGSEDL 66 V VA + G A AQ VTLYGVID + Y N TG G A+++SGG SR G KG ED+ Sbjct: 25 VAVACVAGPGAAFAQDGVTLYGVIDEFAQYVN-TGNGYTAAINSGGQWGSRFGLKGGEDI 83 Query: 67 GGGLRANFQMENGFASDSGAMHDSTRLFNRQSWVGLGNELGELRLGRQNSPGFLMIARLD 126 GGG + F +ENGF + G++ S LFNRQ+WVG+ + G++R GRQNSP F D Sbjct: 84 GGGQKIEFALENGFNPNDGSLASSGSLFNRQAWVGIAGQWGKVRAGRQNSPLFNDQGGQD 143 Query: 127 AFAGATYASFLNNVSAYTPRYDNVIGYLSPVMRGFRVQAYYGLGEQTAPRNGLSTAMLAG 186 AF G T AS ++N++ + R N + Y SP + GF+ Y+G G+ R+ S+ Sbjct: 144 AFGGVTQASGMDNLTVFAFRTSNTLSYQSPEIAGFQGGLYFGFGDAGGVRSAGSSQQFDL 203 Query: 187 EYESGPLYLGVSSSAQNSANDNITIRSTFAGGAYDYGSGKVFLGYYRGNNLGAAASANTP 246 YE GP V+ +A T R+ AG +Y+ G V+ G+ +A Sbjct: 204 TYEHGPFGAFVAGQWLKNATATTTDRTIMAGASYEIGKATVYGGF-------SAVKWADL 256 Query: 247 GSYYSAYSLSANYRLTGQATLGAGYGWAKDSTGAGRNARQFSLIGTYDLSRRTMLYATYA 306 G Y LS Y+ + GY + D + G +A Q L+ YDLS+RT Y + Sbjct: 257 GIDSRVYGLSVKYQFNPANYVALGYAYLHDQSSQGNHADQLGLMYEYDLSKRTSFYGALS 316 Query: 307 HLANNNGASFSLAGAAPITKNAPVSGGTVNGVQVGIRHLF 346 +L N N A ++LAGAA G GVQ+GI H F Sbjct: 317 YLRNRNQAGYTLAGAANPGLPLAYPGANARGVQLGIVHRF 356 >ref|YP_004349341.1| Porin, Gram-negative type [Burkholderia gladioli BSR3] gb|AEA63829.1| Porin, Gram-negative type [Burkholderia gladioli BSR3] Length = 359 Score = 202 bits (514), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 131/330 (39%), Positives = 176/330 (53%), Gaps = 12/330 (3%) Query: 19 LAQSNVTLYGVIDTYMGYTNATGKGSVASLDSGGYQASRVGFKGSEDLGGGLRANFQMEN 78 AQ +VTLYGVIDT + TN G G V LDSG Y+ SR+G +G+E +GGG R F +E+ Sbjct: 40 FAQGSVTLYGVIDTSIELTNP-GSGWVPRLDSGAYRGSRIGLRGAEPIGGGTRILFDLES 98 Query: 79 GFASDSGAMHDSTRLFNRQSWVGLGNELGELRLGRQNSPGFLMIA-RLDAFAGATYASFL 137 GF S+ G + + LFNRQ+WVGLG GE+R+GRQ SP ++ ++DAF T AS L Sbjct: 99 GFGSNDGTLSSAGTLFNRQAWVGLGAPWGEIRVGRQYSPIYIPFKGQIDAFGAGTIASGL 158 Query: 138 NNVSAYTPRYDNVIGYLSPVMRGFRVQAYYGLGEQTA-PRNGLSTAMLAGEYESGPLYLG 196 NN+S TP N I YLSP GF + + +A NGL + Y GP + Sbjct: 159 NNLSKITPYESNAITYLSPDFHGFSSTLMVSMRDPSAGGANGLGGTIATVAYRRGPFRIA 218 Query: 197 VSSSAQNSANDNITIRSTFAGGAYDYGSGKVFLGYYRGNNLGAAASANTPGSYYSAYSLS 256 A ND+ +RS G +Y G F+ + G+ G TP + ++S Sbjct: 219 F---AHQQTNDSGALRSNLGGVSYTLGRVTGFVSVFNGDGGG------TPRYHDDGAAVS 269 Query: 257 ANYRLTGQATLGAGYGWAKDSTGAGRNARQFSLIGTYDLSRRTMLYATYAHLANNNGASF 316 Y T + GY + +D +GAG +A QFS +G YDLSRR +LYA+ L N A F Sbjct: 270 LRYAATSRLRAMLGYAYLRDRSGAGNDADQFSAMGEYDLSRRLLLYASAGWLRNRGKARF 329 Query: 317 SLAGAAPITKNAPVSGGTVNGVQVGIRHLF 346 +L G G TV GVQ+G+ F Sbjct: 330 TLRGVNVTGLPPAYPGATVKGVQIGMIERF 359