BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0194.p (213 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774761.1| two component response regulator protein [He... 440 e-122 ref|ZP_03583791.1| C4-dicarboxylate transport transcriptional re... 251 7e-65 ref|YP_002907817.1| LuxR family two component transcriptional re... 250 1e-64 gb|EGD02782.1| two component LuxR family transcriptional regulat... 250 1e-64 ref|YP_001947837.1| LuxR family two component transcriptional re... 250 1e-64 ref|YP_837242.1| two component LuxR family transcriptional regul... 249 2e-64 ref|YP_373260.1| two component LuxR family transcriptional regul... 249 2e-64 ref|YP_001585050.1| two component LuxR family transcriptional re... 249 3e-64 ref|YP_001895791.1| LuxR family transcriptional regulator [Burkh... 247 8e-64 ref|ZP_02890886.1| two component transcriptional regulator, LuxR... 246 1e-63 >ref|YP_003774761.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62853.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 214 Score = 440 bits (1132), Expect = e-122, Method: Compositional matrix adjust. Identities = 213/213 (100%), Positives = 213/213 (100%) Query: 1 METNPPVVYIVDDDEAVRTSLAWLLSSVNIRTECFEGPEAFLKAYDANSLSCLILDVRMP 60 METNPPVVYIVDDDEAVRTSLAWLLSSVNIRTECFEGPEAFLKAYDANSLSCLILDVRMP Sbjct: 2 METNPPVVYIVDDDEAVRTSLAWLLSSVNIRTECFEGPEAFLKAYDANSLSCLILDVRMP 61 Query: 61 EISGFQLQDRLKEIGADIPVIFVSGHGDIPMSVRALHNGAVDFLEKPYNSQQMLERIQMT 120 EISGFQLQDRLKEIGADIPVIFVSGHGDIPMSVRALHNGAVDFLEKPYNSQQMLERIQMT Sbjct: 62 EISGFQLQDRLKEIGADIPVIFVSGHGDIPMSVRALHNGAVDFLEKPYNSQQMLERIQMT 121 Query: 121 LKHVAGNMQARTRRQQLKARLKTLTAREREILEKVIMGQSSKLIARELNISVKTVDVHRA 180 LKHVAGNMQARTRRQQLKARLKTLTAREREILEKVIMGQSSKLIARELNISVKTVDVHRA Sbjct: 122 LKHVAGNMQARTRRQQLKARLKTLTAREREILEKVIMGQSSKLIARELNISVKTVDVHRA 181 Query: 181 SVKDKLGCQSTATLVRDVLMDFGSDFLRLPKAA 213 SVKDKLGCQSTATLVRDVLMDFGSDFLRLPKAA Sbjct: 182 SVKDKLGCQSTATLVRDVLMDFGSDFLRLPKAA 214 >ref|ZP_03583791.1| C4-dicarboxylate transport transcriptional regulatory protein DctR [Burkholderia multivorans CGD1] gb|EEE02234.1| C4-dicarboxylate transport transcriptional regulatory protein DctR [Burkholderia multivorans CGD1] Length = 210 Score = 251 bits (640), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 123/205 (60%), Positives = 152/205 (74%) Query: 1 METNPPVVYIVDDDEAVRTSLAWLLSSVNIRTECFEGPEAFLKAYDANSLSCLILDVRMP 60 M + P+VYIVDDD +RTSLAWLL SV I +E F FL +DAN +CL+LDVRMP Sbjct: 1 MTSPAPIVYIVDDDGGMRTSLAWLLESVGIASEGFANAADFLARFDANLPACLVLDVRMP 60 Query: 61 EISGFQLQDRLKEIGADIPVIFVSGHGDIPMSVRALHNGAVDFLEKPYNSQQMLERIQMT 120 E SGF +Q L GA +PVIFVSGHGDIPMSVRAL NGA+DF+EKPYNSQQMLER+Q Sbjct: 61 EKSGFDVQAELNARGATLPVIFVSGHGDIPMSVRALQNGAIDFVEKPYNSQQMLERVQRA 120 Query: 121 LKHVAGNMQARTRRQQLKARLKTLTAREREILEKVIMGQSSKLIARELNISVKTVDVHRA 180 L+ A R ++L+ RL LTARE+E+L+ V+ G+ SK IA +L+ISVKTVDVHRA Sbjct: 121 LRLAQQRHAADQRHRELRERLAALTAREKEVLQGVVDGKGSKQIASDLSISVKTVDVHRA 180 Query: 181 SVKDKLGCQSTATLVRDVLMDFGSD 205 S+K+KLG S A LVRDV++ +G + Sbjct: 181 SIKEKLGATSIAALVRDVMVVWGDE 205 >ref|YP_002907817.1| LuxR family two component transcriptional regulator [Burkholderia glumae BGR1] gb|ACR30582.1| Two component transcriptional regulator, LuxR family [Burkholderia glumae BGR1] Length = 215 Score = 250 bits (638), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 121/204 (59%), Positives = 153/204 (75%) Query: 1 METNPPVVYIVDDDEAVRTSLAWLLSSVNIRTECFEGPEAFLKAYDANSLSCLILDVRMP 60 M + P++YIVDDD +RTSLAWLL SV +++E F FL+A+D + SCLILDVRMP Sbjct: 1 MMSPTPMIYIVDDDSGMRTSLAWLLESVGVKSEGFASAAEFLEAFDQSVPSCLILDVRMP 60 Query: 61 EISGFQLQDRLKEIGADIPVIFVSGHGDIPMSVRALHNGAVDFLEKPYNSQQMLERIQMT 120 E SGF +Q L GA +P+IFVSGHGDIPMSVRA+ NGA+DF+EKPYNSQQML+R+Q Sbjct: 61 ERSGFDVQTELNRRGATLPIIFVSGHGDIPMSVRAMQNGAIDFVEKPYNSQQMLDRVQNA 120 Query: 121 LKHVAGNMQARTRRQQLKARLKTLTAREREILEKVIMGQSSKLIARELNISVKTVDVHRA 180 +K RR +L+ R+++LTARERE+L VI G+ SK IA EL+ISVKTVDVHRA Sbjct: 121 MKLAMQRHAGDRRRLELRQRIESLTAREREVLRGVIDGKGSKKIASELSISVKTVDVHRA 180 Query: 181 SVKDKLGCQSTATLVRDVLMDFGS 204 S+K+KLG S A+LVRDV +G+ Sbjct: 181 SIKEKLGVASIASLVRDVTFVWGA 204 >gb|EGD02782.1| two component LuxR family transcriptional regulator [Burkholderia sp. TJI49] Length = 210 Score = 250 bits (638), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 123/205 (60%), Positives = 150/205 (73%) Query: 1 METNPPVVYIVDDDEAVRTSLAWLLSSVNIRTECFEGPEAFLKAYDANSLSCLILDVRMP 60 M + P+VYIVDDD +RTSLAWLL SV I +E F FL +DAN +CL+LDVRMP Sbjct: 1 MTSPAPIVYIVDDDSGMRTSLAWLLESVGIVSEGFANAADFLARFDANLPACLVLDVRMP 60 Query: 61 EISGFQLQDRLKEIGADIPVIFVSGHGDIPMSVRALHNGAVDFLEKPYNSQQMLERIQMT 120 E SGF +Q L GA +PVIFVSGHGDIPMSVRAL NGA+DF+EKPYNSQQMLER+Q Sbjct: 61 EKSGFDVQAELNARGATLPVIFVSGHGDIPMSVRALQNGAIDFVEKPYNSQQMLERVQRA 120 Query: 121 LKHVAGNMQARTRRQQLKARLKTLTAREREILEKVIMGQSSKLIARELNISVKTVDVHRA 180 L+ R ++L+ RL LTARE+E+L V+ G+ SK IA +L+ISVKTVDVHRA Sbjct: 121 LRLAQQRHAVDRRHRELRQRLDALTAREKEVLRGVVDGKGSKQIASDLSISVKTVDVHRA 180 Query: 181 SVKDKLGCQSTATLVRDVLMDFGSD 205 S+K+KLG S A LVRDV++ +G D Sbjct: 181 SIKEKLGATSIAALVRDVMVVWGGD 205 >ref|YP_001947837.1| LuxR family two component transcriptional regulator [Burkholderia multivorans ATCC 17616] dbj|BAG45301.1| LuxR family two component transcriptional regulator [Burkholderia multivorans ATCC 17616] Length = 210 Score = 250 bits (638), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 123/205 (60%), Positives = 152/205 (74%) Query: 1 METNPPVVYIVDDDEAVRTSLAWLLSSVNIRTECFEGPEAFLKAYDANSLSCLILDVRMP 60 M + P+VYIVDDD +RTSLAWLL SV I +E F FL +DAN +CL+LDVRMP Sbjct: 1 MTSPAPIVYIVDDDGGMRTSLAWLLESVGIASEGFANAADFLARFDANLPACLVLDVRMP 60 Query: 61 EISGFQLQDRLKEIGADIPVIFVSGHGDIPMSVRALHNGAVDFLEKPYNSQQMLERIQMT 120 E SGF +Q L GA +PVIFVSGHGDIPMSVRAL NGA+DF+EKPYNSQQMLER+Q Sbjct: 61 EKSGFDVQAELNARGATLPVIFVSGHGDIPMSVRALQNGAIDFVEKPYNSQQMLERVQRA 120 Query: 121 LKHVAGNMQARTRRQQLKARLKTLTAREREILEKVIMGQSSKLIARELNISVKTVDVHRA 180 L+ A R ++L+ RL LTARE+E+L+ V+ G+ SK IA +L+ISVKTVDVHRA Sbjct: 121 LRLAQQRHVADQRHRELRERLAALTAREKEVLQGVVDGKGSKQIASDLSISVKTVDVHRA 180 Query: 181 SVKDKLGCQSTATLVRDVLMDFGSD 205 S+K+KLG S A LVRDV++ +G + Sbjct: 181 SIKEKLGATSIAALVRDVMVVWGDE 205 >ref|YP_837242.1| two component LuxR family transcriptional regulator [Burkholderia cenocepacia HI2424] ref|YP_001777551.1| two component LuxR family transcriptional regulator [Burkholderia cenocepacia MC0-3] ref|YP_002233263.1| LuxR superfamily regulatory protein [Burkholderia cenocepacia J2315] ref|ZP_04942350.1| regulatory protein, LuxR [Burkholderia cenocepacia PC184] gb|ABK10349.1| two component transcriptional regulator, LuxR family [Burkholderia cenocepacia HI2424] gb|EAY65521.1| regulatory protein, LuxR [Burkholderia cenocepacia PC184] gb|ACA93061.1| two component transcriptional regulator, LuxR family [Burkholderia cenocepacia MC0-3] emb|CAR54498.1| LuxR superfamily regulatory protein [Burkholderia cenocepacia J2315] Length = 210 Score = 249 bits (635), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 122/205 (59%), Positives = 149/205 (72%) Query: 1 METNPPVVYIVDDDEAVRTSLAWLLSSVNIRTECFEGPEAFLKAYDANSLSCLILDVRMP 60 M + P+VYIVDDD +RTSLAWLL SV I +E F FL +D N +CL+LDVRMP Sbjct: 1 MTSPAPIVYIVDDDSGMRTSLAWLLESVGIASEGFANAADFLARFDVNLPACLVLDVRMP 60 Query: 61 EISGFQLQDRLKEIGADIPVIFVSGHGDIPMSVRALHNGAVDFLEKPYNSQQMLERIQMT 120 E SGF +Q L GA +PVIFVSGHGDIPMSVRAL NGA+DF+EKPYNSQQMLER+Q Sbjct: 61 EKSGFDVQAELNARGATLPVIFVSGHGDIPMSVRALQNGAIDFVEKPYNSQQMLERVQRA 120 Query: 121 LKHVAGNMQARTRRQQLKARLKTLTAREREILEKVIMGQSSKLIARELNISVKTVDVHRA 180 L+ R ++L+ RL LTARE+E+L V+ G+ SK IA +L+ISVKTVDVHRA Sbjct: 121 LRLAQQRHAVSQRHRELRQRLDALTAREKEVLRGVVDGKGSKQIASDLSISVKTVDVHRA 180 Query: 181 SVKDKLGCQSTATLVRDVLMDFGSD 205 S+K+KLG S A LVRDV++ +G D Sbjct: 181 SIKEKLGATSIAALVRDVMVVWGDD 205 >ref|YP_373260.1| two component LuxR family transcriptional regulator [Burkholderia sp. 383] gb|ABB12616.1| two component transcriptional regulator, LuxR family [Burkholderia sp. 383] Length = 210 Score = 249 bits (635), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 122/205 (59%), Positives = 149/205 (72%) Query: 1 METNPPVVYIVDDDEAVRTSLAWLLSSVNIRTECFEGPEAFLKAYDANSLSCLILDVRMP 60 M + P+VYIVDDD +RTSLAWLL SV I +E F FL +D N +CL+LDVRMP Sbjct: 1 MTSPAPIVYIVDDDNGMRTSLAWLLESVGIASEGFANATDFLARFDVNLPACLVLDVRMP 60 Query: 61 EISGFQLQDRLKEIGADIPVIFVSGHGDIPMSVRALHNGAVDFLEKPYNSQQMLERIQMT 120 E SGF +Q L GA +PVIFVSGHGDIPMSVRAL NGA+DF+EKPYNSQQMLER+Q Sbjct: 61 EKSGFDVQAELNARGATLPVIFVSGHGDIPMSVRALQNGAIDFVEKPYNSQQMLERVQRA 120 Query: 121 LKHVAGNMQARTRRQQLKARLKTLTAREREILEKVIMGQSSKLIARELNISVKTVDVHRA 180 L+ R ++L+ RL LTARE+E+L V+ G+ SK IA +L+ISVKTVDVHRA Sbjct: 121 LRLAQQRHAVSQRHRELRQRLDALTAREKEVLRGVVDGKGSKQIASDLSISVKTVDVHRA 180 Query: 181 SVKDKLGCQSTATLVRDVLMDFGSD 205 S+K+KLG S A LVRDV++ +G D Sbjct: 181 SIKEKLGATSIAALVRDVMVVWGDD 205 >ref|YP_001585050.1| two component LuxR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gb|ABX18758.1| two component transcriptional regulator, LuxR family [Burkholderia multivorans ATCC 17616] Length = 241 Score = 249 bits (635), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 123/205 (60%), Positives = 152/205 (74%) Query: 1 METNPPVVYIVDDDEAVRTSLAWLLSSVNIRTECFEGPEAFLKAYDANSLSCLILDVRMP 60 M + P+VYIVDDD +RTSLAWLL SV I +E F FL +DAN +CL+LDVRMP Sbjct: 32 MTSPAPIVYIVDDDGGMRTSLAWLLESVGIASEGFANAADFLARFDANLPACLVLDVRMP 91 Query: 61 EISGFQLQDRLKEIGADIPVIFVSGHGDIPMSVRALHNGAVDFLEKPYNSQQMLERIQMT 120 E SGF +Q L GA +PVIFVSGHGDIPMSVRAL NGA+DF+EKPYNSQQMLER+Q Sbjct: 92 EKSGFDVQAELNARGATLPVIFVSGHGDIPMSVRALQNGAIDFVEKPYNSQQMLERVQRA 151 Query: 121 LKHVAGNMQARTRRQQLKARLKTLTAREREILEKVIMGQSSKLIARELNISVKTVDVHRA 180 L+ A R ++L+ RL LTARE+E+L+ V+ G+ SK IA +L+ISVKTVDVHRA Sbjct: 152 LRLAQQRHVADQRHRELRERLAALTAREKEVLQGVVDGKGSKQIASDLSISVKTVDVHRA 211 Query: 181 SVKDKLGCQSTATLVRDVLMDFGSD 205 S+K+KLG S A LVRDV++ +G + Sbjct: 212 SIKEKLGATSIAALVRDVMVVWGDE 236 >ref|YP_001895791.1| LuxR family transcriptional regulator [Burkholderia phytofirmans PsJN] gb|ACD16567.1| two component transcriptional regulator, LuxR family [Burkholderia phytofirmans PsJN] Length = 220 Score = 247 bits (631), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 118/200 (59%), Positives = 152/200 (76%) Query: 6 PVVYIVDDDEAVRTSLAWLLSSVNIRTECFEGPEAFLKAYDANSLSCLILDVRMPEISGF 65 P+VYIVDDD +RTSLAWLL SV +++ F FL+A+DA+ +CL+LDVRMPE SGF Sbjct: 13 PIVYIVDDDSGMRTSLAWLLESVGVKSAGFANASEFLRAFDADVPACLVLDVRMPEQSGF 72 Query: 66 QLQDRLKEIGADIPVIFVSGHGDIPMSVRALHNGAVDFLEKPYNSQQMLERIQMTLKHVA 125 +Q L G +P+IFVSGHGDIPMSVRAL NGA+DF+EKPYNSQQML+R+Q LK A Sbjct: 73 DVQAELNRQGVTLPIIFVSGHGDIPMSVRALQNGAIDFVEKPYNSQQMLDRVQSALKLAA 132 Query: 126 GNMQARTRRQQLKARLKTLTAREREILEKVIMGQSSKLIARELNISVKTVDVHRASVKDK 185 A ++++L+ R+++LTARE+E+L VI G+ SK IA +L+ISVKTVDVHRAS+KDK Sbjct: 133 QRHVAGQKQRELRKRIESLTAREKEVLRGVIDGKGSKRIASDLSISVKTVDVHRASIKDK 192 Query: 186 LGCQSTATLVRDVLMDFGSD 205 LG S A LVR+V+ + D Sbjct: 193 LGAASIAMLVREVMAVWDQD 212 >ref|ZP_02890886.1| two component transcriptional regulator, LuxR family [Burkholderia ambifaria IOP40-10] gb|EDT03534.1| two component transcriptional regulator, LuxR family [Burkholderia ambifaria IOP40-10] Length = 210 Score = 246 bits (629), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 121/205 (59%), Positives = 148/205 (72%) Query: 1 METNPPVVYIVDDDEAVRTSLAWLLSSVNIRTECFEGPEAFLKAYDANSLSCLILDVRMP 60 M + P+VYIVDDD +RTSLAWLL SV I +E F FL +D N +CL+LDVRMP Sbjct: 1 MTSPAPIVYIVDDDSGMRTSLAWLLESVGIASEGFANAAEFLARFDVNLPACLVLDVRMP 60 Query: 61 EISGFQLQDRLKEIGADIPVIFVSGHGDIPMSVRALHNGAVDFLEKPYNSQQMLERIQMT 120 E SGF +Q L GA +PVIFVSGHGDIPMSVRAL NGA+DF+EKPYNSQQMLER+Q Sbjct: 61 EKSGFDVQAELNARGATLPVIFVSGHGDIPMSVRALQNGAIDFVEKPYNSQQMLERVQRA 120 Query: 121 LKHVAGNMQARTRRQQLKARLKTLTAREREILEKVIMGQSSKLIARELNISVKTVDVHRA 180 L+ ++L+ RL LTARE+E+L V+ G+ SK IA +L+ISVKTVDVHRA Sbjct: 121 LRLAQQRHAVDRHHRELRQRLDALTAREKEVLRGVVDGKGSKQIASDLSISVKTVDVHRA 180 Query: 181 SVKDKLGCQSTATLVRDVLMDFGSD 205 S+K+KLG S A LVRDV++ +G D Sbjct: 181 SIKEKLGATSIAALVRDVMVVWGGD 205