BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0175.p (201 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774780.1| transcription regulator protein [Herbaspiril... 399 e-109 ref|ZP_08178806.1| transcriptional regulator [Xanthomonas vesica... 191 7e-47 ref|ZP_08183598.1| transcriptional regulator [Xanthomonas gardne... 188 4e-46 ref|ZP_06486233.1| transcriptional regulator [Xanthomonas campes... 183 1e-44 ref|NP_638032.1| transcriptional regulator [Xanthomonas campestr... 180 1e-43 ref|YP_001902884.1| transcriptional regulator, TetR family [Xant... 178 4e-43 ref|ZP_08189258.1| transcriptional regulator [Xanthomonas perfor... 173 1e-41 ref|YP_364736.1| TetR family transcriptional regulator [Xanthomo... 173 1e-41 ref|NP_643154.1| transcriptional regulator [Xanthomonas axonopod... 173 2e-41 ref|ZP_06703197.1| transcriptional regulator, TetR family [Xanth... 172 2e-41 >ref|YP_003774780.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62872.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 201 Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust. Identities = 197/199 (98%), Positives = 199/199 (100%) Query: 1 MRVKTAERRDAILAAAAEVFLEEGFEGASMAGISARIGGSKGTLYSYFKSKEELFVAVTH 60 MRVKTAERRDAILAAAAEVFLEEGFEGASMAGISARIGGSKGTLYSYFKSKEELFVAVTH Sbjct: 1 MRVKTAERRDAILAAAAEVFLEEGFEGASMAGISARIGGSKGTLYSYFKSKEELFVAVTH 60 Query: 61 EQAKKQMEPALAALEKDTGDLQKTLQVFGEKAVSFLCQESTLQTHRMIVAESGRSDIGRR 120 EQAKKQMEPALAALEKDTGDLQKTLQVFGEKAVSFLCQESTLQTHRMIVAESGRSDIGRR Sbjct: 61 EQAKKQMEPALAALEKDTGDLQKTLQVFGEKAVSFLCQESTLQTHRMIVAESGRSDIGRR 120 Query: 121 FHESGPKMGMERLAAFLSRQMQAGRLKQADPMLATLQLCALLDCETVKPMMLGLESAISR 180 FHESGPK+GMER+AAFLSRQMQAGRLKQADPMLATLQLCALLDCETVKPMMLGLESAISR Sbjct: 121 FHESGPKLGMERIAAFLSRQMQAGRLKQADPMLATLQLCALLDCETVKPMMLGLESAISR 180 Query: 181 PRMKRMVGRAVETFLAAYA 199 PRMKRMVGRAVETFLAAYA Sbjct: 181 PRMKRMVGRAVETFLAAYA 199 >ref|ZP_08178806.1| transcriptional regulator [Xanthomonas vesicatoria ATCC 35937] gb|EGD08943.1| transcriptional regulator [Xanthomonas vesicatoria ATCC 35937] Length = 206 Score = 191 bits (484), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 98/199 (49%), Positives = 132/199 (66%) Query: 1 MRVKTAERRDAILAAAAEVFLEEGFEGASMAGISARIGGSKGTLYSYFKSKEELFVAVTH 60 MRV+T +RDAI+ AA+EVFLE GFEGASM+ I+AR+GGSK TLY YF SKEELFVAV Sbjct: 1 MRVRTEAKRDAIIEAASEVFLEMGFEGASMSQIAARVGGSKRTLYGYFPSKEELFVAVAT 60 Query: 61 EQAKKQMEPALAALEKDTGDLQKTLQVFGEKAVSFLCQESTLQTHRMIVAESGRSDIGRR 120 A +EP + ALE +++ L FG ++FLC +++ + I+ SGRS++G Sbjct: 61 AMADSYIEPLIVALESTDAPVEQALHTFGRDILTFLCAPTSITIWQTIIGVSGRSEVGAL 120 Query: 121 FHESGPKMGMERLAAFLSRQMQAGRLKQADPMLATLQLCALLDCETVKPMMLGLESAISR 180 F+ SGP+ GM R+A +LSRQM+ G L++ADP+ A+ Q LL +T+ P + G S Sbjct: 121 FYNSGPEEGMRRVAEYLSRQMEQGVLRRADPIDASRQFGGLLQADTMMPCLFGALKDPSP 180 Query: 181 PRMKRMVGRAVETFLAAYA 199 + V RAVE FLAAYA Sbjct: 181 EYLHGAVQRAVELFLAAYA 199 >ref|ZP_08183598.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865] gb|EGD18771.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865] Length = 206 Score = 188 bits (478), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 95/199 (47%), Positives = 132/199 (66%) Query: 1 MRVKTAERRDAILAAAAEVFLEEGFEGASMAGISARIGGSKGTLYSYFKSKEELFVAVTH 60 MRV+T E+RDAI+ AA+EVFLE GFEGASM+ I+AR+GGSK TLY YF SKEELF+A Sbjct: 1 MRVRTEEKRDAIVQAASEVFLELGFEGASMSQIAARVGGSKRTLYGYFPSKEELFIAFAQ 60 Query: 61 EQAKKQMEPALAALEKDTGDLQKTLQVFGEKAVSFLCQESTLQTHRMIVAESGRSDIGRR 120 + + ++P L AL + +G + +TLQ FGE + FLC S++ + I+ SGRSD+G Sbjct: 61 DTSDSYIDPMLDALTRSSGPVSQTLQRFGEDLLGFLCAPSSITIWQTIIGVSGRSDVGAL 120 Query: 121 FHESGPKMGMERLAAFLSRQMQAGRLKQADPMLATLQLCALLDCETVKPMMLGLESAISR 180 F +GP+ GM+R+A +L +QM G +++ D LA QL ALL+ +T+ P + G S Sbjct: 121 FFNAGPEEGMQRMAEYLQQQMDLGLMRRGDATLAAKQLGALLEAQTLMPCLFGALKDPSP 180 Query: 181 PRMKRMVGRAVETFLAAYA 199 ++ RAVE FLA Y Sbjct: 181 EYLRDATQRAVELFLAGYG 199 >ref|ZP_06486233.1| transcriptional regulator [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 213 Score = 183 bits (465), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 91/199 (45%), Positives = 134/199 (67%) Query: 1 MRVKTAERRDAILAAAAEVFLEEGFEGASMAGISARIGGSKGTLYSYFKSKEELFVAVTH 60 MRV+T E+R+AI+ AA+EVFLE GFEGASM+ I+AR+GGSK TLY YF SKEELFVA Sbjct: 5 MRVRTEEKREAIVQAASEVFLELGFEGASMSQIAARVGGSKRTLYGYFPSKEELFVAFAK 64 Query: 61 EQAKKQMEPALAALEKDTGDLQKTLQVFGEKAVSFLCQESTLQTHRMIVAESGRSDIGRR 120 + + + ++P L AL + +G +++TLQ FGE ++FLC S++ + I+ SGRSD+G Sbjct: 65 DMSDRYIDPLLDALSQSSGPIEETLQRFGEDILTFLCAPSSITIWQTIIGVSGRSDVGAL 124 Query: 121 FHESGPKMGMERLAAFLSRQMQAGRLKQADPMLATLQLCALLDCETVKPMMLGLESAISR 180 F +GP+ G++R+ +L QM+ G ++ D ++A+ QL LL ET+ P + G S Sbjct: 125 FFNAGPEEGVQRVTDYLQTQMERGVIRCPDALIASKQLSGLLHAETLMPCLFGALQDPSP 184 Query: 181 PRMKRMVGRAVETFLAAYA 199 +++ RAV+ FLA Y Sbjct: 185 AYLRQATRRAVDMFLAGYG 203 >ref|NP_638032.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. ATCC 33913] ref|YP_242519.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. 8004] gb|AAM41956.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. ATCC 33913] gb|AAY48499.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. 8004] gb|AEL07906.1| transcriptional regulator [Xanthomonas campestris pv. raphani 756C] Length = 205 Score = 180 bits (456), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 92/199 (46%), Positives = 127/199 (63%) Query: 1 MRVKTAERRDAILAAAAEVFLEEGFEGASMAGISARIGGSKGTLYSYFKSKEELFVAVTH 60 MRV+T E+RD I+ AA+EVFLE GFEGASM+ I+AR+GGSK TLY YF SKEELFVAV Sbjct: 1 MRVRTEEKRDTIVQAASEVFLELGFEGASMSQIAARVGGSKRTLYGYFGSKEELFVAVAK 60 Query: 61 EQAKKQMEPALAALEKDTGDLQKTLQVFGEKAVSFLCQESTLQTHRMIVAESGRSDIGRR 120 + + + +P L AL + +G + LQ FGE ++FLC + + + I+ SGRSD+G Sbjct: 61 DMSDRYFDPLLDALSRSSGPIADALQRFGEDVLTFLCAPPNITSWQTIIGVSGRSDVGAL 120 Query: 121 FHESGPKMGMERLAAFLSRQMQAGRLKQADPMLATLQLCALLDCETVKPMMLGLESAISR 180 F +G + G++R A +L Q+ G+L+ D MLA Q AL++ ET+ P + G S Sbjct: 121 FFSAGQEEGLKRFAEYLQTQVDCGQLRCDDTMLAAQQFAALVEAETLMPCLFGALKNPSP 180 Query: 181 PRMKRMVGRAVETFLAAYA 199 ++ RAVE FL YA Sbjct: 181 EYLRDATRRAVELFLVGYA 199 >ref|YP_001902884.1| transcriptional regulator, TetR family [Xanthomonas campestris pv. campestris str. B100] emb|CAP50828.1| transcriptional regulator, TetR family [Xanthomonas campestris pv. campestris] Length = 205 Score = 178 bits (452), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 91/199 (45%), Positives = 127/199 (63%) Query: 1 MRVKTAERRDAILAAAAEVFLEEGFEGASMAGISARIGGSKGTLYSYFKSKEELFVAVTH 60 MRV+T E+RD I+ AA+EVFL+ GFEGASM+ I+AR+GGSK TLY YF SKEELFVAV Sbjct: 1 MRVRTEEKRDTIVQAASEVFLKLGFEGASMSQIAARVGGSKRTLYGYFGSKEELFVAVAK 60 Query: 61 EQAKKQMEPALAALEKDTGDLQKTLQVFGEKAVSFLCQESTLQTHRMIVAESGRSDIGRR 120 + + + +P L AL + +G + LQ FGE ++FLC + + + I+ SGRSD+G Sbjct: 61 DMSDRYFDPLLDALSRSSGPIADALQRFGEDVLTFLCAPPNITSWQTIIGVSGRSDVGAL 120 Query: 121 FHESGPKMGMERLAAFLSRQMQAGRLKQADPMLATLQLCALLDCETVKPMMLGLESAISR 180 F +G + G++R A +L Q+ G+L+ D MLA Q AL++ ET+ P + G S Sbjct: 121 FFSAGQEEGLKRFAEYLQTQVDCGQLRCDDTMLAAQQFAALVEAETLMPCLFGALKNPSP 180 Query: 181 PRMKRMVGRAVETFLAAYA 199 ++ RAVE FL YA Sbjct: 181 EYLRDATRRAVELFLVGYA 199 >ref|ZP_08189258.1| transcriptional regulator [Xanthomonas perforans 91-118] gb|EGD13072.1| transcriptional regulator [Xanthomonas perforans 91-118] Length = 213 Score = 173 bits (439), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 90/198 (45%), Positives = 128/198 (64%) Query: 1 MRVKTAERRDAILAAAAEVFLEEGFEGASMAGISARIGGSKGTLYSYFKSKEELFVAVTH 60 MRV+T E+R+AI+ AA+EVFLE GFEGASM+ I+AR+GGSK TLY YF SKEELFVAV Sbjct: 8 MRVRTEEKREAIVQAASEVFLELGFEGASMSQIAARVGGSKRTLYGYFPSKEELFVAVAK 67 Query: 61 EQAKKQMEPALAALEKDTGDLQKTLQVFGEKAVSFLCQESTLQTHRMIVAESGRSDIGRR 120 + + + +P L AL + +G + + LQ FGE ++FLC + + + I+ SGRS +G Sbjct: 68 DMSDRYFDPLLHALSQSSGPVDEALQRFGEDVLTFLCAPPNITSWQTIIGVSGRSAVGAL 127 Query: 121 FHESGPKMGMERLAAFLSRQMQAGRLKQADPMLATLQLCALLDCETVKPMMLGLESAISR 180 + +G + G++R A +L Q+ G L D +LA Q ALL+ ET+ P + G + Sbjct: 128 YFSAGQEEGIQRFAEYLQAQVDCGLLHCQDTLLAAHQYAALLESETLMPCLFGALKDPTP 187 Query: 181 PRMKRMVGRAVETFLAAY 198 ++ RAV+TFLAAY Sbjct: 188 EFLRDATRRAVQTFLAAY 205 >ref|YP_364736.1| TetR family transcriptional regulator [Xanthomonas campestris pv. vesicatoria str. 85-10] ref|YP_004852343.1| transcriptional regulator [Xanthomonas axonopodis pv. citrumelo F1] emb|CAJ24705.1| transcriptional regulator, TetR family [Xanthomonas campestris pv. vesicatoria str. 85-10] gb|AEO43045.1| transcriptional regulator [Xanthomonas axonopodis pv. citrumelo F1] Length = 206 Score = 173 bits (438), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 90/198 (45%), Positives = 128/198 (64%) Query: 1 MRVKTAERRDAILAAAAEVFLEEGFEGASMAGISARIGGSKGTLYSYFKSKEELFVAVTH 60 MRV+T E+R+AI+ AA+EVFLE GFEGASM+ I+AR+GGSK TLY YF SKEELFVAV Sbjct: 1 MRVRTEEKREAIVQAASEVFLELGFEGASMSQIAARVGGSKRTLYGYFPSKEELFVAVAK 60 Query: 61 EQAKKQMEPALAALEKDTGDLQKTLQVFGEKAVSFLCQESTLQTHRMIVAESGRSDIGRR 120 + + + +P L AL + +G + + LQ FGE ++FLC + + + I+ SGRS +G Sbjct: 61 DMSDRYFDPLLHALSQSSGPVDEALQRFGEDVLTFLCAPPNITSWQTIIGVSGRSAVGAL 120 Query: 121 FHESGPKMGMERLAAFLSRQMQAGRLKQADPMLATLQLCALLDCETVKPMMLGLESAISR 180 + +G + G++R A +L Q+ G L D +LA Q ALL+ ET+ P + G + Sbjct: 121 YFSAGQEEGIQRFAEYLQAQVDCGLLHCQDTLLAAHQYAALLESETLMPCLFGALKDPTP 180 Query: 181 PRMKRMVGRAVETFLAAY 198 ++ RAV+TFLAAY Sbjct: 181 EFLRDATRRAVQTFLAAY 198 >ref|NP_643154.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str. 306] gb|AAM37690.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str. 306] Length = 206 Score = 173 bits (438), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 89/198 (44%), Positives = 128/198 (64%) Query: 1 MRVKTAERRDAILAAAAEVFLEEGFEGASMAGISARIGGSKGTLYSYFKSKEELFVAVTH 60 MRV+T E+R+AI+ AA+EVFLE GFEGASM+ I+AR+GGSK TLY YF SKEELFVAV + Sbjct: 1 MRVRTEEKREAIVQAASEVFLELGFEGASMSQIAARVGGSKRTLYGYFPSKEELFVAVAN 60 Query: 61 EQAKKQMEPALAALEKDTGDLQKTLQVFGEKAVSFLCQESTLQTHRMIVAESGRSDIGRR 120 + + + +P L AL + +G + + LQ FGE ++FLC + + + I+ SGRS +G Sbjct: 61 DMSDRYFDPLLHALSQSSGPVDEALQRFGEDVLTFLCAPPNITSWQTIIGVSGRSAVGAL 120 Query: 121 FHESGPKMGMERLAAFLSRQMQAGRLKQADPMLATLQLCALLDCETVKPMMLGLESAISR 180 + +G + G++R A +L Q+ G L D +LA Q LL+ ET+ P + G + Sbjct: 121 YFSAGQEEGIQRFAEYLQAQVDCGLLHCEDTLLAAHQYAGLLESETLMPCLFGALKDPTP 180 Query: 181 PRMKRMVGRAVETFLAAY 198 ++ RAV+TFLAAY Sbjct: 181 EFLREATRRAVQTFLAAY 198 >ref|ZP_06703197.1| transcriptional regulator, TetR family [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gb|EFF45230.1| transcriptional regulator, TetR family [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 207 Score = 172 bits (436), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 90/198 (45%), Positives = 127/198 (64%) Query: 1 MRVKTAERRDAILAAAAEVFLEEGFEGASMAGISARIGGSKGTLYSYFKSKEELFVAVTH 60 MRV+T E+R+AI+ AA+EVFLE GFEGASM+ I+ R+GGSK TLY YF SKEELFVAVT Sbjct: 1 MRVRTEEKREAIVQAASEVFLELGFEGASMSQIATRVGGSKRTLYGYFPSKEELFVAVTK 60 Query: 61 EQAKKQMEPALAALEKDTGDLQKTLQVFGEKAVSFLCQESTLQTHRMIVAESGRSDIGRR 120 + + + +P L AL + G + + LQ FGE ++FLC + + + + I+ SGRS +G + Sbjct: 61 DMSDRYFDPLLKALSQRGGPIAEALQRFGEDVLTFLCAQPNIISWQTIIGVSGRSAVGAQ 120 Query: 121 FHESGPKMGMERLAAFLSRQMQAGRLKQADPMLATLQLCALLDCETVKPMMLGLESAISR 180 + + + GM+ A +L Q+ G L+ D +LA Q ALL+ ET+ P + G S Sbjct: 121 YFSASRQEGMQHFAGYLQAQVDCGLLRCDDTLLAAHQFAALLEAETLMPCLFGALKDPSP 180 Query: 181 PRMKRMVGRAVETFLAAY 198 ++ RAVE FLAAY Sbjct: 181 EYLREATRRAVEMFLAAY 198