BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0154.p (242 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775541.1| tRNA nucleotidyltransferase [Herbaspirillum ... 493 e-137 ref|YP_001353022.1| ribonuclease PH [Janthinobacterium sp. Marse... 410 e-113 ref|YP_004753102.1| ribonuclease PH [Collimonas fungivorans Ter3... 408 e-112 ref|YP_001100386.1| RNase PH [Herminiimonas arsenicoxydans] >gi|... 405 e-111 ref|ZP_08272970.1| Ribonuclease PH [Oxalobacteraceae bacterium I... 405 e-111 ref|YP_003605868.1| ribonuclease PH [Burkholderia sp. CCGE1002] ... 368 e-100 ref|ZP_04579081.1| ribonuclease PH [Oxalobacter formigenes OXCC1... 366 1e-99 ref|ZP_03267951.1| ribonuclease PH [Burkholderia sp. H160] >gi|2... 364 5e-99 ref|YP_004229189.1| ribonuclease PH [Burkholderia sp. CCGE1001] ... 362 3e-98 ref|ZP_04576353.1| ribonuclease PH/Ham1 protein [Oxalobacter for... 361 4e-98 >ref|YP_003775541.1| tRNA nucleotidyltransferase [Herbaspirillum seropedicae SmR1] emb|CAM32637.1| tRNA nucleotidyltransferase (ribonuclease PH) protein [Herbaspirillum seropedicae] gb|ADJ63633.1| tRNA nucleotidyltransferase (ribonuclease PH) protein [Herbaspirillum seropedicae SmR1] Length = 242 Score = 493 bits (1269), Expect = e-137, Method: Compositional matrix adjust. Identities = 242/242 (100%), Positives = 242/242 (100%) Query: 1 MTASHRPSGRSPEQLREVRLTRQYTKHAEGSVLVEFGDTRVLCTASIEEKVPGFLKGKGQ 60 MTASHRPSGRSPEQLREVRLTRQYTKHAEGSVLVEFGDTRVLCTASIEEKVPGFLKGKGQ Sbjct: 1 MTASHRPSGRSPEQLREVRLTRQYTKHAEGSVLVEFGDTRVLCTASIEEKVPGFLKGKGQ 60 Query: 61 GWLTAEYGMLPRSTHTRMDREAAKGKQSGRTQEIQRLIGRALRAAFDLEAFGERTLQLDC 120 GWLTAEYGMLPRSTHTRMDREAAKGKQSGRTQEIQRLIGRALRAAFDLEAFGERTLQLDC Sbjct: 61 GWLTAEYGMLPRSTHTRMDREAAKGKQSGRTQEIQRLIGRALRAAFDLEAFGERTLQLDC 120 Query: 121 DVLQADGGTRTAAITGAMVAAYDAFAGLKSQGLIEAIPVKHFVAAISVGVFKGVPVLDLD 180 DVLQADGGTRTAAITGAMVAAYDAFAGLKSQGLIEAIPVKHFVAAISVGVFKGVPVLDLD Sbjct: 121 DVLQADGGTRTAAITGAMVAAYDAFAGLKSQGLIEAIPVKHFVAAISVGVFKGVPVLDLD 180 Query: 181 YPEDSDCDTDMNVVMTDAGHFVEVQGTAEGAAFDRATLNALLDLAQQGIATLNGLQRQAL 240 YPEDSDCDTDMNVVMTDAGHFVEVQGTAEGAAFDRATLNALLDLAQQGIATLNGLQRQAL Sbjct: 181 YPEDSDCDTDMNVVMTDAGHFVEVQGTAEGAAFDRATLNALLDLAQQGIATLNGLQRQAL 240 Query: 241 GL 242 GL Sbjct: 241 GL 242 >ref|YP_001353022.1| ribonuclease PH [Janthinobacterium sp. Marseille] gb|ABR88326.1| ribonuclease PH [Janthinobacterium sp. Marseille] Length = 244 Score = 410 bits (1055), Expect = e-113, Method: Compositional matrix adjust. Identities = 194/242 (80%), Positives = 220/242 (90%) Query: 1 MTASHRPSGRSPEQLREVRLTRQYTKHAEGSVLVEFGDTRVLCTASIEEKVPGFLKGKGQ 60 M+ +RPSGR+ + LR ++LTR YTKHAEGSVL+E GDT+V+CTASIE++VPGFLKGKGQ Sbjct: 1 MSYENRPSGRAADALRAIKLTRNYTKHAEGSVLIECGDTKVICTASIEDRVPGFLKGKGQ 60 Query: 61 GWLTAEYGMLPRSTHTRMDREAAKGKQSGRTQEIQRLIGRALRAAFDLEAFGERTLQLDC 120 GWLTAEYGMLPRSTHTRMDREAA+GKQSGRTQEIQRLIGR+LRAAFDL+AFGERTL LDC Sbjct: 61 GWLTAEYGMLPRSTHTRMDREAARGKQSGRTQEIQRLIGRSLRAAFDLQAFGERTLHLDC 120 Query: 121 DVLQADGGTRTAAITGAMVAAYDAFAGLKSQGLIEAIPVKHFVAAISVGVFKGVPVLDLD 180 DV+QADGGTRTAAITG MVAAYDAF+ L +Q +I AIP+KHFVAAISVGV+KG PVLDLD Sbjct: 121 DVIQADGGTRTAAITGTMVAAYDAFSKLVAQNVIPAIPLKHFVAAISVGVYKGQPVLDLD 180 Query: 181 YPEDSDCDTDMNVVMTDAGHFVEVQGTAEGAAFDRATLNALLDLAQQGIATLNGLQRQAL 240 Y EDSDCDTDMN+VMTDAGHF+EVQGTAEGAAFDRAT++ LLDLAQ GI L LQ+QAL Sbjct: 181 YDEDSDCDTDMNIVMTDAGHFIEVQGTAEGAAFDRATMDKLLDLAQDGIRDLIVLQKQAL 240 Query: 241 GL 242 + Sbjct: 241 AI 242 >ref|YP_004753102.1| ribonuclease PH [Collimonas fungivorans Ter331] gb|AEK62279.1| Ribonuclease PH [Collimonas fungivorans Ter331] Length = 244 Score = 408 bits (1048), Expect = e-112, Method: Compositional matrix adjust. Identities = 198/242 (81%), Positives = 216/242 (89%) Query: 1 MTASHRPSGRSPEQLREVRLTRQYTKHAEGSVLVEFGDTRVLCTASIEEKVPGFLKGKGQ 60 M+ RPSGR+ + LR VRLTR YTKHAEGSVLVEFGDT+V+CTAS+EEKVPGFLKGKGQ Sbjct: 1 MSTITRPSGRAADALRTVRLTRNYTKHAEGSVLVEFGDTKVICTASLEEKVPGFLKGKGQ 60 Query: 61 GWLTAEYGMLPRSTHTRMDREAAKGKQSGRTQEIQRLIGRALRAAFDLEAFGERTLQLDC 120 GWLTAEYGMLPRST+TRMDREAA+GKQSGRTQEIQRLIGR+LRAAFDL+AFGERTL LDC Sbjct: 61 GWLTAEYGMLPRSTNTRMDREAARGKQSGRTQEIQRLIGRSLRAAFDLQAFGERTLHLDC 120 Query: 121 DVLQADGGTRTAAITGAMVAAYDAFAGLKSQGLIEAIPVKHFVAAISVGVFKGVPVLDLD 180 DV+QADGGTRTA+ITGAMVAAYDAFA L I AIP+KHFVAAISVGV++G PVLDLD Sbjct: 121 DVIQADGGTRTASITGAMVAAYDAFARLLESKAIAAIPLKHFVAAISVGVYQGTPVLDLD 180 Query: 181 YPEDSDCDTDMNVVMTDAGHFVEVQGTAEGAAFDRATLNALLDLAQQGIATLNGLQRQAL 240 Y EDS CDTDMNVVMTD GHF+EVQGTAEG AFDR TLN+LLDLAQ GI L LQ+QAL Sbjct: 181 YVEDSGCDTDMNVVMTDTGHFIEVQGTAEGVAFDRPTLNSLLDLAQGGIGELIQLQKQAL 240 Query: 241 GL 242 GL Sbjct: 241 GL 242 >ref|YP_001100386.1| RNase PH [Herminiimonas arsenicoxydans] emb|CAL62263.1| Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase) [Herminiimonas arsenicoxydans] Length = 244 Score = 405 bits (1042), Expect = e-111, Method: Compositional matrix adjust. Identities = 191/242 (78%), Positives = 218/242 (90%) Query: 1 MTASHRPSGRSPEQLREVRLTRQYTKHAEGSVLVEFGDTRVLCTASIEEKVPGFLKGKGQ 60 M+ +RPSGR+ + LR ++ R YTKHAEGSVL+E GDT+V+CTASIE++VPGFLKGKGQ Sbjct: 1 MSYENRPSGRAADALRAIKFIRNYTKHAEGSVLIECGDTKVICTASIEDRVPGFLKGKGQ 60 Query: 61 GWLTAEYGMLPRSTHTRMDREAAKGKQSGRTQEIQRLIGRALRAAFDLEAFGERTLQLDC 120 GWLTAEYGMLPRSTHTRMDREAA+GKQSGRTQEIQRLIGR+LRAAFDL+AFGERTL LDC Sbjct: 61 GWLTAEYGMLPRSTHTRMDREAARGKQSGRTQEIQRLIGRSLRAAFDLQAFGERTLHLDC 120 Query: 121 DVLQADGGTRTAAITGAMVAAYDAFAGLKSQGLIEAIPVKHFVAAISVGVFKGVPVLDLD 180 DV+QADGGTRTAAITG MVAAYDAF+ L +Q +I AIP+KHFVAAISVGV+KG PVLDLD Sbjct: 121 DVIQADGGTRTAAITGTMVAAYDAFSKLVAQNVIPAIPLKHFVAAISVGVYKGQPVLDLD 180 Query: 181 YPEDSDCDTDMNVVMTDAGHFVEVQGTAEGAAFDRATLNALLDLAQQGIATLNGLQRQAL 240 Y EDSDCDTDMN+VMTDAGHF+EVQGTAEGAAFDRAT++ LLDLAQ GI L +Q+QAL Sbjct: 181 YDEDSDCDTDMNIVMTDAGHFIEVQGTAEGAAFDRATMDRLLDLAQDGIRDLIVMQKQAL 240 Query: 241 GL 242 + Sbjct: 241 AI 242 >ref|ZP_08272970.1| Ribonuclease PH [Oxalobacteraceae bacterium IMCC9480] gb|EGF33592.1| Ribonuclease PH [Oxalobacteraceae bacterium IMCC9480] Length = 244 Score = 405 bits (1041), Expect = e-111, Method: Compositional matrix adjust. Identities = 195/242 (80%), Positives = 216/242 (89%) Query: 1 MTASHRPSGRSPEQLREVRLTRQYTKHAEGSVLVEFGDTRVLCTASIEEKVPGFLKGKGQ 60 M+ RPSGR+ + LR VRLTR YTKHAEGSVL+EFGDT+V+CTASIE+KVPGFLKGKGQ Sbjct: 1 MSVQLRPSGRTADALRPVRLTRHYTKHAEGSVLIEFGDTKVICTASIEDKVPGFLKGKGQ 60 Query: 61 GWLTAEYGMLPRSTHTRMDREAAKGKQSGRTQEIQRLIGRALRAAFDLEAFGERTLQLDC 120 GW+TAEYGMLPRSTHTRM REAAKGKQSGRTQEIQRLIGR+LRAAFDL AFGERTL LDC Sbjct: 61 GWMTAEYGMLPRSTHTRMAREAAKGKQSGRTQEIQRLIGRSLRAAFDLSAFGERTLHLDC 120 Query: 121 DVLQADGGTRTAAITGAMVAAYDAFAGLKSQGLIEAIPVKHFVAAISVGVFKGVPVLDLD 180 DV+QADGGTRTA+ITGAMVAA+DAF+ L G++ A+P+KHFVAAISVGVF+G PVLDLD Sbjct: 121 DVIQADGGTRTASITGAMVAAHDAFSKLVDTGVLSAMPLKHFVAAISVGVFQGTPVLDLD 180 Query: 181 YPEDSDCDTDMNVVMTDAGHFVEVQGTAEGAAFDRATLNALLDLAQQGIATLNGLQRQAL 240 Y EDS CDTDMNVVMTDAGHF+EVQGTAEGAAFDRAT+N LLDLA GI L LQR+ L Sbjct: 181 YDEDSTCDTDMNVVMTDAGHFIEVQGTAEGAAFDRATMNQLLDLADGGIRDLIALQRREL 240 Query: 241 GL 242 GL Sbjct: 241 GL 242 >ref|YP_003605868.1| ribonuclease PH [Burkholderia sp. CCGE1002] gb|ADG16357.1| ribonuclease PH [Burkholderia sp. CCGE1002] Length = 245 Score = 368 bits (945), Expect = e-100, Method: Compositional matrix adjust. Identities = 175/239 (73%), Positives = 202/239 (84%) Query: 4 SHRPSGRSPEQLREVRLTRQYTKHAEGSVLVEFGDTRVLCTASIEEKVPGFLKGKGQGWL 63 +HRPSGR P QLR+VR+TR YTKHAEGSVLVEFGDT+V+CTAS+ E VP FL+ +GQGWL Sbjct: 5 THRPSGRQPNQLRDVRITRHYTKHAEGSVLVEFGDTKVICTASVSESVPPFLRDRGQGWL 64 Query: 64 TAEYGMLPRSTHTRMDREAAKGKQSGRTQEIQRLIGRALRAAFDLEAFGERTLQLDCDVL 123 TAEYGMLPR+THTR DREAA+GKQ+GRTQEIQRLIGRALR+ FDLE G RT+ LDCDV+ Sbjct: 65 TAEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRSVFDLEKLGARTINLDCDVI 124 Query: 124 QADGGTRTAAITGAMVAAYDAFAGLKSQGLIEAIPVKHFVAAISVGVFKGVPVLDLDYPE 183 QADGGTRTA+ITGA VAA+DA A L + G IE+ P+ +VAAISVGV+ GVPVLDLDY E Sbjct: 125 QADGGTRTASITGAFVAAHDAVARLLATGRIESSPITDYVAAISVGVYDGVPVLDLDYDE 184 Query: 184 DSDCDTDMNVVMTDAGHFVEVQGTAEGAAFDRATLNALLDLAQQGIATLNGLQRQALGL 242 DS CDTDMNVVMT AG FVE+QGTAEG F R +NALLDLA GI+TL Q++ALG+ Sbjct: 185 DSQCDTDMNVVMTGAGGFVEIQGTAEGVPFSREEMNALLDLASDGISTLIAKQKEALGV 243 >ref|ZP_04579081.1| ribonuclease PH [Oxalobacter formigenes OXCC13] gb|EEO30054.1| ribonuclease PH [Oxalobacter formigenes OXCC13] Length = 247 Score = 366 bits (940), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 168/237 (70%), Positives = 207/237 (87%) Query: 6 RPSGRSPEQLREVRLTRQYTKHAEGSVLVEFGDTRVLCTASIEEKVPGFLKGKGQGWLTA 65 R +GR + +R + R YTK+AEGSVL FGDT+V+CTASIEE VP FL+G+G+GWLTA Sbjct: 8 RANGRPLDSMRSIEFIRNYTKYAEGSVLTVFGDTKVICTASIEESVPPFLRGRGRGWLTA 67 Query: 66 EYGMLPRSTHTRMDREAAKGKQSGRTQEIQRLIGRALRAAFDLEAFGERTLQLDCDVLQA 125 EYGMLPRSTHTRMDREAA+G+QSGRTQEIQRLIGR++RAAFDL+AFGERTL+LDCDV+QA Sbjct: 68 EYGMLPRSTHTRMDREAARGRQSGRTQEIQRLIGRSIRAAFDLDAFGERTLKLDCDVIQA 127 Query: 126 DGGTRTAAITGAMVAAYDAFAGLKSQGLIEAIPVKHFVAAISVGVFKGVPVLDLDYPEDS 185 DGGTRTA+I+G M+AAYDAF+ + +GLI+ +P++HFVAAISVGV +GVP+LDLDY EDS Sbjct: 128 DGGTRTASISGVMIAAYDAFSMMVEEGLIDKVPLRHFVAAISVGVNQGVPLLDLDYQEDS 187 Query: 186 DCDTDMNVVMTDAGHFVEVQGTAEGAAFDRATLNALLDLAQQGIATLNGLQRQALGL 242 CDTDMNVVMT+AG FVE+QGTAEG AF R TLN +L +A++GI+ L G+Q++ LGL Sbjct: 188 TCDTDMNVVMTEAGEFVEIQGTAEGGAFSRQTLNDMLGMAEKGISELIGMQKKVLGL 244 >ref|ZP_03267951.1| ribonuclease PH [Burkholderia sp. H160] gb|EEA00497.1| ribonuclease PH [Burkholderia sp. H160] Length = 245 Score = 364 bits (935), Expect = 5e-99, Method: Compositional matrix adjust. Identities = 175/239 (73%), Positives = 200/239 (83%) Query: 4 SHRPSGRSPEQLREVRLTRQYTKHAEGSVLVEFGDTRVLCTASIEEKVPGFLKGKGQGWL 63 + RPSGR P QLR+VR+TR YTKHAEGSVLVEFGDT+V+CTASI E VP FL+ +GQGWL Sbjct: 5 TQRPSGRQPNQLRDVRITRHYTKHAEGSVLVEFGDTKVICTASISESVPPFLRDRGQGWL 64 Query: 64 TAEYGMLPRSTHTRMDREAAKGKQSGRTQEIQRLIGRALRAAFDLEAFGERTLQLDCDVL 123 TAEYGMLPR+THTR DREAA+GKQ+GRTQEIQRLIGRALR+ FDLE G RTL LDCDV+ Sbjct: 65 TAEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRSVFDLEKLGARTLNLDCDVI 124 Query: 124 QADGGTRTAAITGAMVAAYDAFAGLKSQGLIEAIPVKHFVAAISVGVFKGVPVLDLDYPE 183 QADGGTRTA+ITGA VAA+DA A L + G IE+ P+ +VAAISVGV+ GVPVLDLDY E Sbjct: 125 QADGGTRTASITGAFVAAHDAVAKLLATGRIESSPINDYVAAISVGVYDGVPVLDLDYDE 184 Query: 184 DSDCDTDMNVVMTDAGHFVEVQGTAEGAAFDRATLNALLDLAQQGIATLNGLQRQALGL 242 DS CDTDMNVVMT AG FVE+QGTAEG F R ++ALLDLA GI+TL Q+ ALG+ Sbjct: 185 DSQCDTDMNVVMTGAGGFVEIQGTAEGVPFSRDEMSALLDLASDGISTLIAKQKAALGV 243 >ref|YP_004229189.1| ribonuclease PH [Burkholderia sp. CCGE1001] gb|ADX56129.1| ribonuclease PH [Burkholderia sp. CCGE1001] Length = 246 Score = 362 bits (929), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 174/237 (73%), Positives = 198/237 (83%) Query: 4 SHRPSGRSPEQLREVRLTRQYTKHAEGSVLVEFGDTRVLCTASIEEKVPGFLKGKGQGWL 63 + RPSGR +QLR+VR+TR YTKHAEGSVLVEFGDT+V+CTASI E VP FL+ +GQGWL Sbjct: 5 TQRPSGRLADQLRDVRITRHYTKHAEGSVLVEFGDTKVICTASIAETVPSFLRDRGQGWL 64 Query: 64 TAEYGMLPRSTHTRMDREAAKGKQSGRTQEIQRLIGRALRAAFDLEAFGERTLQLDCDVL 123 TAEYGMLPR+THTR DREAA+GKQ+GRTQEIQRLIGRALR+ FDLE G RTL +DCDV+ Sbjct: 65 TAEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRSVFDLEKLGARTLHIDCDVI 124 Query: 124 QADGGTRTAAITGAMVAAYDAFAGLKSQGLIEAIPVKHFVAAISVGVFKGVPVLDLDYPE 183 QADGGTRTA+ITGA VAA+DA + L + G IE+ P+ FVAAISVGV+ GVPVLDLDY E Sbjct: 125 QADGGTRTASITGAFVAAHDAVSKLLAAGRIESSPISDFVAAISVGVYDGVPVLDLDYDE 184 Query: 184 DSDCDTDMNVVMTDAGHFVEVQGTAEGAAFDRATLNALLDLAQQGIATLNGLQRQAL 240 DS CDTDMNVVMT AG FVE+QGTAEG F R +NALLDLA GIATL Q+ AL Sbjct: 185 DSQCDTDMNVVMTGAGGFVEIQGTAEGVPFSRDEMNALLDLASSGIATLTAKQKAAL 241 >ref|ZP_04576353.1| ribonuclease PH/Ham1 protein [Oxalobacter formigenes HOxBLS] gb|EEO27315.1| ribonuclease PH/Ham1 protein [Oxalobacter formigenes HOxBLS] Length = 248 Score = 361 bits (927), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 167/237 (70%), Positives = 203/237 (85%) Query: 6 RPSGRSPEQLREVRLTRQYTKHAEGSVLVEFGDTRVLCTASIEEKVPGFLKGKGQGWLTA 65 R +GR + +R + R YTK+AEGSVL FGDT+V+CTASIEE VP FL+G+G+GWLTA Sbjct: 10 RSNGRPLDAMRSIEFIRNYTKYAEGSVLTVFGDTQVICTASIEESVPPFLRGRGRGWLTA 69 Query: 66 EYGMLPRSTHTRMDREAAKGKQSGRTQEIQRLIGRALRAAFDLEAFGERTLQLDCDVLQA 125 EYGMLPRSTHTRM+REAA+G+QSGRTQEIQRLIGR++RAAFDL AFGERTL+LDCDV+QA Sbjct: 70 EYGMLPRSTHTRMEREAARGRQSGRTQEIQRLIGRSIRAAFDLNAFGERTLRLDCDVIQA 129 Query: 126 DGGTRTAAITGAMVAAYDAFAGLKSQGLIEAIPVKHFVAAISVGVFKGVPVLDLDYPEDS 185 DGGTRTA+I+G M+AAYDAF+ + +GLIE +P++HFVAAISVGV +GVP+LDLDY EDS Sbjct: 130 DGGTRTASISGVMIAAYDAFSLMVEEGLIEKVPLRHFVAAISVGVIQGVPMLDLDYQEDS 189 Query: 186 DCDTDMNVVMTDAGHFVEVQGTAEGAAFDRATLNALLDLAQQGIATLNGLQRQALGL 242 CDTDMNVVMT+AG FVE+QGTAEG AF + LN +L +AQQGI L +Q++ LGL Sbjct: 190 SCDTDMNVVMTEAGDFVEIQGTAEGGAFSHSLLNEMLGMAQQGIGELIHMQKRVLGL 246