BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0140.p (130 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775554.1| uracil-DNA glycosylase [Herbaspirillum serop... 260 5e-68 ref|YP_004753078.1| DNA polymerase, bacteriophage-type [Collimon... 174 4e-42 ref|YP_001353212.1| DNA polymerase bacteriophage-type [Janthinob... 164 3e-39 ref|YP_001100043.1| putative DNA polymerase-related protein, bac... 162 2e-38 ref|ZP_02363273.1| putative phage-related DNA polymerase [Burkho... 142 2e-32 ref|ZP_02356133.1| putative phage-related DNA polymerase [Burkho... 140 5e-32 ref|YP_296146.1| Phage SPO1 DNA polymerase-related protein [Rals... 140 9e-32 ref|YP_004685863.1| DNA polymerase bacteriophage-type,uracil-DNA... 138 3e-31 ref|YP_001059495.1| uracil-DNA glycosylase [Burkholderia pseudom... 137 4e-31 ref|ZP_01763966.1| uracil-DNA glycosylase, family 4 [Burkholderi... 137 5e-31 >ref|YP_003775554.1| uracil-DNA glycosylase [Herbaspirillum seropedicae SmR1] gb|ADJ63646.1| uracil-DNA glycosylase protein [Herbaspirillum seropedicae SmR1] Length = 340 Score = 260 bits (664), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 124/125 (99%), Positives = 124/125 (99%) Query: 1 MDFAASLEPVLIPEGEDDEPMPAVDPVIARIKQMDWPQLKEQVADCRRCGLCQGRKKTVF 60 MDFAASLEPVLIPEGEDDEPMPAVDPVIARIKQMDWPQLKEQVADCRRCGLCQGRKKTVF Sbjct: 117 MDFAASLEPVLIPEGEDDEPMPAVDPVIARIKQMDWPQLKEQVADCRRCGLCQGRKKTVF 176 Query: 61 GVGDEKAKWLFIGEGPGRNEDIQGEPFVGPAGKLLDNMLVSMGVKRGDNAYIANIVKCRP 120 GVGDEKAKWLFIGEGPGRNEDIQGEPFVGPAGKLLDNMLVSMGVKRGDNAYIANIVKCRP Sbjct: 177 GVGDEKAKWLFIGEGPGRNEDIQGEPFVGPAGKLLDNMLVSMGVKRGDNAYIANIVKCRP 236 Query: 121 TDETG 125 TDE G Sbjct: 237 TDENG 241 >ref|YP_004753078.1| DNA polymerase, bacteriophage-type [Collimonas fungivorans Ter331] gb|AEK62255.1| DNA polymerase, bacteriophage-type [Collimonas fungivorans Ter331] Length = 282 Score = 174 bits (441), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 83/112 (74%), Positives = 91/112 (81%), Gaps = 3/112 (2%) Query: 17 DDEPMPAVDPVIARIKQ---MDWPQLKEQVADCRRCGLCQGRKKTVFGVGDEKAKWLFIG 73 DDEP+ A + + MDW QL+ VA C CGLCQGRK TVFGVGD KAKWLFIG Sbjct: 72 DDEPISAPSAAVHAAQSPAAMDWTQLQAAVAGCTACGLCQGRKNTVFGVGDSKAKWLFIG 131 Query: 74 EGPGRNEDIQGEPFVGPAGKLLDNMLVSMGVKRGDNAYIANIVKCRPTDETG 125 EGPGRNEDIQGEPFVGPAGKLLDN+L++MG+KRGDNAYIANIVKCRPTD TG Sbjct: 132 EGPGRNEDIQGEPFVGPAGKLLDNILLAMGLKRGDNAYIANIVKCRPTDGTG 183 >ref|YP_001353212.1| DNA polymerase bacteriophage-type [Janthinobacterium sp. Marseille] gb|ABR88341.1| DNA polymerase bacteriophage-type [Janthinobacterium sp. Marseille] Length = 286 Score = 164 bits (416), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 72/93 (77%), Positives = 82/93 (88%) Query: 31 IKQMDWPQLKEQVADCRRCGLCQGRKKTVFGVGDEKAKWLFIGEGPGRNEDIQGEPFVGP 90 I M W QLKE V++C CGLC+GR +TVFGVGD+KAKWLF+GEGPGRNED QGEPFVGP Sbjct: 92 IASMGWEQLKEVVSNCTECGLCKGRTQTVFGVGDQKAKWLFVGEGPGRNEDFQGEPFVGP 151 Query: 91 AGKLLDNMLVSMGVKRGDNAYIANIVKCRPTDE 123 AGKLLDNM ++MG+KRG+N YIANIVKCRPTDE Sbjct: 152 AGKLLDNMFIAMGLKRGENTYIANIVKCRPTDE 184 >ref|YP_001100043.1| putative DNA polymerase-related protein, bacteriophage-type [Herminiimonas arsenicoxydans] emb|CAL61918.1| Putative phage SPO1 DNA polymerase-related protein, uracil-DNA glycosylase family [Herminiimonas arsenicoxydans] Length = 283 Score = 162 bits (409), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 72/100 (72%), Positives = 81/100 (81%) Query: 23 AVDPVIARIKQMDWPQLKEQVADCRRCGLCQGRKKTVFGVGDEKAKWLFIGEGPGRNEDI 82 A A I QMDW QLK VA C +CGLC+ R +TVFGVGD+KA+WLF+GEGPGRNED Sbjct: 81 ATSTSFADIVQMDWAQLKSVVASCTQCGLCKSRTQTVFGVGDQKARWLFVGEGPGRNEDF 140 Query: 83 QGEPFVGPAGKLLDNMLVSMGVKRGDNAYIANIVKCRPTD 122 QGEPFVGPAGKLLDNM +MG+KRG+N YIANIVKCRP D Sbjct: 141 QGEPFVGPAGKLLDNMFGAMGLKRGENTYIANIVKCRPID 180 >ref|ZP_02363273.1| putative phage-related DNA polymerase [Burkholderia oklahomensis C6786] Length = 311 Score = 142 bits (357), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 68/116 (58%), Positives = 85/116 (73%), Gaps = 5/116 (4%) Query: 7 LEPVLIPEGED--DEPMPAVDPVIARIKQMDWPQLKEQVADCRRCGLCQGRKKTVFGVGD 64 LEPV P D +P A +P +A ++ W +L+ +VADCRRC LC+ R TVFGVGD Sbjct: 96 LEPVFEPALPDVAAKPAAASEPSVA---ELGWDELRARVADCRRCRLCEKRTNTVFGVGD 152 Query: 65 EKAKWLFIGEGPGRNEDIQGEPFVGPAGKLLDNMLVSMGVKRGDNAYIANIVKCRP 120 E+A W+ IGE PG NED QGEPFVG AGKLLDNML ++ +KRG+N YIAN++KCRP Sbjct: 153 ERADWMLIGEAPGENEDKQGEPFVGQAGKLLDNMLRALALKRGENVYIANVIKCRP 208 >ref|ZP_02356133.1| putative phage-related DNA polymerase [Burkholderia oklahomensis EO147] Length = 253 Score = 140 bits (354), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 68/116 (58%), Positives = 85/116 (73%), Gaps = 5/116 (4%) Query: 7 LEPVLIPEGED--DEPMPAVDPVIARIKQMDWPQLKEQVADCRRCGLCQGRKKTVFGVGD 64 LEPV P D +P A +P +A ++ W +L+ +VADCRRC LC+ R TVFGVGD Sbjct: 38 LEPVFEPALPDVAAKPAAASEPSVA---ELGWDELRARVADCRRCRLCEKRTNTVFGVGD 94 Query: 65 EKAKWLFIGEGPGRNEDIQGEPFVGPAGKLLDNMLVSMGVKRGDNAYIANIVKCRP 120 E+A W+ IGE PG NED QGEPFVG AGKLLDNML ++ +KRG+N YIAN++KCRP Sbjct: 95 ERADWMLIGEAPGENEDKQGEPFVGQAGKLLDNMLRALALKRGENVYIANVIKCRP 150 >ref|YP_296146.1| Phage SPO1 DNA polymerase-related protein [Ralstonia eutropha JMP134] gb|AAZ61302.1| Phage SPO1 DNA polymerase-related protein [Ralstonia eutropha JMP134] Length = 285 Score = 140 bits (352), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 63/103 (61%), Positives = 75/103 (72%), Gaps = 3/103 (2%) Query: 21 MPAVDPV---IARIKQMDWPQLKEQVADCRRCGLCQGRKKTVFGVGDEKAKWLFIGEGPG 77 +P + PV A I MDWP L VA C CGLC R TVFGVGD +A+W+ IGE PG Sbjct: 83 LPVIAPVSDRAAAIAAMDWPTLDAAVAACEACGLCSTRTNTVFGVGDREAEWMLIGEAPG 142 Query: 78 RNEDIQGEPFVGPAGKLLDNMLVSMGVKRGDNAYIANIVKCRP 120 NED+QGEPFVG AGKLLDNML S+G++RG N +IAN++KCRP Sbjct: 143 ENEDLQGEPFVGQAGKLLDNMLASLGLRRGRNVFIANVLKCRP 185 >ref|YP_004685863.1| DNA polymerase bacteriophage-type,uracil-DNA glycosylase superfamily [Cupriavidus necator N-1] gb|AEI77382.1| DNA polymerase bacteriophage-type,uracil-DNA glycosylase superfamily [Cupriavidus necator N-1] Length = 285 Score = 138 bits (347), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 66/114 (57%), Positives = 79/114 (69%), Gaps = 2/114 (1%) Query: 7 LEPVLIPEGEDDEPMPAVDPVIARIKQMDWPQLKEQVADCRRCGLCQGRKKTVFGVGDEK 66 + P L+P G EP A A I M+WP L VA C CGLCQ R TVFGVGD + Sbjct: 74 VAPALVPAG--PEPGSAQAGREAAIASMEWPALDAAVASCTACGLCQNRTNTVFGVGDRQ 131 Query: 67 AKWLFIGEGPGRNEDIQGEPFVGPAGKLLDNMLVSMGVKRGDNAYIANIVKCRP 120 A+W+ +GE PG NED+QGEPFVG AGKLLDNML S+G+ RG N +IAN++KCRP Sbjct: 132 AEWMLVGEAPGENEDLQGEPFVGQAGKLLDNMLGSLGLARGRNVFIANVLKCRP 185 >ref|YP_001059495.1| uracil-DNA glycosylase [Burkholderia pseudomallei 668] gb|ABN81635.1| uracil-DNA glycosylase, family 4 [Burkholderia pseudomallei 668] Length = 455 Score = 137 bits (346), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 64/114 (56%), Positives = 79/114 (69%), Gaps = 2/114 (1%) Query: 7 LEPVLIPEGEDDEPMPAVDPVIARIKQMDWPQLKEQVADCRRCGLCQGRKKTVFGVGDEK 66 LEPV P D PA + ++ W +L+ +VADC RC LC+ R TVFGVGDE Sbjct: 241 LEPVHEPALPDVAARPAA--TTPSVAELGWDELRARVADCARCRLCEKRTNTVFGVGDEH 298 Query: 67 AKWLFIGEGPGRNEDIQGEPFVGPAGKLLDNMLVSMGVKRGDNAYIANIVKCRP 120 A W+ +GE PG NED QGEPFVG AGKLLDNML ++ +KRG+N YIAN++KCRP Sbjct: 299 ADWMLVGEAPGENEDKQGEPFVGQAGKLLDNMLRALALKRGENVYIANVIKCRP 352 >ref|ZP_01763966.1| uracil-DNA glycosylase, family 4 [Burkholderia pseudomallei 305] gb|EBA50980.1| uracil-DNA glycosylase, family 4 [Burkholderia pseudomallei 305] Length = 453 Score = 137 bits (346), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 64/114 (56%), Positives = 79/114 (69%), Gaps = 2/114 (1%) Query: 7 LEPVLIPEGEDDEPMPAVDPVIARIKQMDWPQLKEQVADCRRCGLCQGRKKTVFGVGDEK 66 LEPV P D PA + ++ W +L+ +VADC RC LC+ R TVFGVGDE Sbjct: 239 LEPVHEPALPDVAARPAA--TTPSVAELGWDELRARVADCARCRLCEKRTNTVFGVGDEH 296 Query: 67 AKWLFIGEGPGRNEDIQGEPFVGPAGKLLDNMLVSMGVKRGDNAYIANIVKCRP 120 A W+ +GE PG NED QGEPFVG AGKLLDNML ++ +KRG+N YIAN++KCRP Sbjct: 297 ADWMLVGEAPGENEDKQGEPFVGQAGKLLDNMLRALALKRGENVYIANVIKCRP 350