BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0135.p (461 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775558.1| ATP-dependent serine protease [Herbaspirillu... 931 0.0 ref|YP_004753073.1| DNA repair protein [Collimonas fungivorans T... 830 0.0 ref|YP_001353216.1| DNA repair protein RadA [Janthinobacterium s... 808 0.0 ref|ZP_08273285.1| DNA repair protein RadA [Oxalobacteraceae bac... 808 0.0 ref|YP_001100039.1| DNA repair protein RadA [Herminiimonas arsen... 798 0.0 ref|ZP_04576553.1| RadA DNA repair protein [Oxalobacter formigen... 763 0.0 ref|ZP_04578964.1| RadA DNA repair protein [Oxalobacter formigen... 748 0.0 ref|YP_004228662.1| DNA repair protein RadA [Burkholderia sp. CC... 722 0.0 ref|ZP_02887623.1| DNA repair protein RadA [Burkholderia gramini... 719 0.0 ref|ZP_06841755.1| DNA repair protein RadA [Burkholderia sp. Ch1... 719 0.0 >ref|YP_003775558.1| ATP-dependent serine protease [Herbaspirillum seropedicae SmR1] gb|ADJ63650.1| ATP-dependent serine protease protein [Herbaspirillum seropedicae SmR1] Length = 461 Score = 931 bits (2407), Expect = 0.0, Method: Compositional matrix adjust. Identities = 461/461 (100%), Positives = 461/461 (100%) Query: 1 MAKVKTNYTCTECGGVSNKWAGQCPACGQWNTLVETLVEPAGGNRYSNSPQSLAQTAPVL 60 MAKVKTNYTCTECGGVSNKWAGQCPACGQWNTLVETLVEPAGGNRYSNSPQSLAQTAPVL Sbjct: 1 MAKVKTNYTCTECGGVSNKWAGQCPACGQWNTLVETLVEPAGGNRYSNSPQSLAQTAPVL 60 Query: 61 SLADIEAIDVPRFGTGIEEFDRVLGGGLVPGGVALIGGDPGIGKSTLLLQALANISRLKK 120 SLADIEAIDVPRFGTGIEEFDRVLGGGLVPGGVALIGGDPGIGKSTLLLQALANISRLKK Sbjct: 61 SLADIEAIDVPRFGTGIEEFDRVLGGGLVPGGVALIGGDPGIGKSTLLLQALANISRLKK 120 Query: 121 VLYVSGEESGAQIALRAKRLAVDARELQLQAEIQLEKILATLAEHKPEVAVIDSIQTLYS 180 VLYVSGEESGAQIALRAKRLAVDARELQLQAEIQLEKILATLAEHKPEVAVIDSIQTLYS Sbjct: 121 VLYVSGEESGAQIALRAKRLAVDARELQLQAEIQLEKILATLAEHKPEVAVIDSIQTLYS 180 Query: 181 DALTSAPGSVAQVRECAAQLTRVAKTSGITIIMVGHVTKEGALAGPRVLEHIVDTVLYFE 240 DALTSAPGSVAQVRECAAQLTRVAKTSGITIIMVGHVTKEGALAGPRVLEHIVDTVLYFE Sbjct: 181 DALTSAPGSVAQVRECAAQLTRVAKTSGITIIMVGHVTKEGALAGPRVLEHIVDTVLYFE 240 Query: 241 GDTHSSFRLVRAFKNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQHENQVPGSCVMVTQ 300 GDTHSSFRLVRAFKNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQHENQVPGSCVMVTQ Sbjct: 241 GDTHSSFRLVRAFKNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQHENQVPGSCVMVTQ 300 Query: 301 EGTRPLLVEIQALVDSSHVPNARRLSVGLEQNRLAMLLAVLHRHAGVAAFDQDVFINAVG 360 EGTRPLLVEIQALVDSSHVPNARRLSVGLEQNRLAMLLAVLHRHAGVAAFDQDVFINAVG Sbjct: 301 EGTRPLLVEIQALVDSSHVPNARRLSVGLEQNRLAMLLAVLHRHAGVAAFDQDVFINAVG 360 Query: 361 GVKITEPAADLAVLLAINSSMRNKPLPRGLVVFGEVGLAGEIRPAPRGQERLREAAKLGF 420 GVKITEPAADLAVLLAINSSMRNKPLPRGLVVFGEVGLAGEIRPAPRGQERLREAAKLGF Sbjct: 361 GVKITEPAADLAVLLAINSSMRNKPLPRGLVVFGEVGLAGEIRPAPRGQERLREAAKLGF 420 Query: 421 SIAVIPKANAPKQAIEGLKVIAVERIDDALQKAREIDDHAS 461 SIAVIPKANAPKQAIEGLKVIAVERIDDALQKAREIDDHAS Sbjct: 421 SIAVIPKANAPKQAIEGLKVIAVERIDDALQKAREIDDHAS 461 >ref|YP_004753073.1| DNA repair protein [Collimonas fungivorans Ter331] gb|AEK62250.1| DNA repair protein [Collimonas fungivorans Ter331] Length = 456 Score = 830 bits (2143), Expect = 0.0, Method: Compositional matrix adjust. Identities = 420/455 (92%), Positives = 438/455 (96%), Gaps = 1/455 (0%) Query: 1 MAKVKTNYTCTECGGVSNKWAGQCPACGQWNTLVETLVEPAGGNRYSNSPQSLAQTAPVL 60 MAK KTNYTCTECGGV+NKW GQCP+CGQWNTLVETLVE A GNR+SN Q LAQTAPV+ Sbjct: 1 MAKAKTNYTCTECGGVANKWTGQCPSCGQWNTLVETLVE-AVGNRFSNQHQGLAQTAPVM 59 Query: 61 SLADIEAIDVPRFGTGIEEFDRVLGGGLVPGGVALIGGDPGIGKSTLLLQALANISRLKK 120 +LADIEAIDVPRFGTGIEEFDRVLGGGLV GGV LIGGDPGIGKSTLLLQALAN+S+LKK Sbjct: 60 TLADIEAIDVPRFGTGIEEFDRVLGGGLVAGGVVLIGGDPGIGKSTLLLQALANLSKLKK 119 Query: 121 VLYVSGEESGAQIALRAKRLAVDARELQLQAEIQLEKILATLAEHKPEVAVIDSIQTLYS 180 VLYVSGEESGAQIALRAKRLAVDA++L+LQAEIQLEKIL TL EHKPEVAVIDSIQT+YS Sbjct: 120 VLYVSGEESGAQIALRAKRLAVDAKDLKLQAEIQLEKILNTLVEHKPEVAVIDSIQTVYS 179 Query: 181 DALTSAPGSVAQVRECAAQLTRVAKTSGITIIMVGHVTKEGALAGPRVLEHIVDTVLYFE 240 DAL+SAPGSVAQVRECAAQLTRVAK SGITIIMVGHVTKEGALAGPRVLEHIVDTVLYFE Sbjct: 180 DALSSAPGSVAQVRECAAQLTRVAKQSGITIIMVGHVTKEGALAGPRVLEHIVDTVLYFE 239 Query: 241 GDTHSSFRLVRAFKNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQHENQVPGSCVMVTQ 300 GDTHSSFRLVRAFKNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQH+NQVPGSCVMVTQ Sbjct: 240 GDTHSSFRLVRAFKNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQHDNQVPGSCVMVTQ 299 Query: 301 EGTRPLLVEIQALVDSSHVPNARRLSVGLEQNRLAMLLAVLHRHAGVAAFDQDVFINAVG 360 EGTRPLLVEIQALVD+SHVPNARRLSVGLEQNRLAMLLAVLHRHAG+AAFDQDVFINAVG Sbjct: 300 EGTRPLLVEIQALVDASHVPNARRLSVGLEQNRLAMLLAVLHRHAGIAAFDQDVFINAVG 359 Query: 361 GVKITEPAADLAVLLAINSSMRNKPLPRGLVVFGEVGLAGEIRPAPRGQERLREAAKLGF 420 GVKITEPAADLAVLLAINSSMRN+PLPRGLVVFGEVGLAGEIRPAPRGQERLREAAKLGF Sbjct: 360 GVKITEPAADLAVLLAINSSMRNRPLPRGLVVFGEVGLAGEIRPAPRGQERLREAAKLGF 419 Query: 421 SIAVIPKANAPKQAIEGLKVIAVERIDDALQKARE 455 SIA+IPKAN PKQ IEGLKVI VERIDDAL K R+ Sbjct: 420 SIAMIPKANMPKQEIEGLKVIGVERIDDALSKIRD 454 >ref|YP_001353216.1| DNA repair protein RadA [Janthinobacterium sp. Marseille] gb|ABR88631.1| RadA DNA repair protein [Janthinobacterium sp. Marseille] Length = 456 Score = 808 bits (2087), Expect = 0.0, Method: Compositional matrix adjust. Identities = 406/455 (89%), Positives = 435/455 (95%), Gaps = 1/455 (0%) Query: 1 MAKVKTNYTCTECGGVSNKWAGQCPACGQWNTLVETLVEPAGGNRYSNSPQSLAQTAPVL 60 MAK KTNYTC+ECGG+SNKW GQCPACG WNTLVET+VE +G NR+S Q LAQTAPVL Sbjct: 1 MAKAKTNYTCSECGGISNKWGGQCPACGSWNTLVETVVE-SGSNRFSVQHQGLAQTAPVL 59 Query: 61 SLADIEAIDVPRFGTGIEEFDRVLGGGLVPGGVALIGGDPGIGKSTLLLQALANISRLKK 120 SLADIEAIDVPRFGTGIEEFDRVLGGGLV GGV LIGGDPGIGKSTLLLQALAN+SR+KK Sbjct: 60 SLADIEAIDVPRFGTGIEEFDRVLGGGLVAGGVVLIGGDPGIGKSTLLLQALANLSRIKK 119 Query: 121 VLYVSGEESGAQIALRAKRLAVDARELQLQAEIQLEKILATLAEHKPEVAVIDSIQTLYS 180 VLYVSGEESGAQIALRAKRLAVDA++L+LQAEIQLEKIL TLAEHKP+VAVIDSIQT+YS Sbjct: 120 VLYVSGEESGAQIALRAKRLAVDAKDLKLQAEIQLEKILTTLAEHKPDVAVIDSIQTVYS 179 Query: 181 DALTSAPGSVAQVRECAAQLTRVAKTSGITIIMVGHVTKEGALAGPRVLEHIVDTVLYFE 240 DAL+SAPGSVAQVRECAAQLTR+AK +GITIIMVGHVTKEGALAGPRVLEHIVDTVLYFE Sbjct: 180 DALSSAPGSVAQVRECAAQLTRIAKQTGITIIMVGHVTKEGALAGPRVLEHIVDTVLYFE 239 Query: 241 GDTHSSFRLVRAFKNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQHENQVPGSCVMVTQ 300 GDTHSSFRLVRA KNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQH+N VPG+CVMVTQ Sbjct: 240 GDTHSSFRLVRAIKNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQHDNPVPGACVMVTQ 299 Query: 301 EGTRPLLVEIQALVDSSHVPNARRLSVGLEQNRLAMLLAVLHRHAGVAAFDQDVFINAVG 360 EGTRPLLVEIQALVD+SH+PNARRLSVGLEQNRLAMLLAVLHRHAG+AAFDQDVFINAVG Sbjct: 300 EGTRPLLVEIQALVDTSHLPNARRLSVGLEQNRLAMLLAVLHRHAGIAAFDQDVFINAVG 359 Query: 361 GVKITEPAADLAVLLAINSSMRNKPLPRGLVVFGEVGLAGEIRPAPRGQERLREAAKLGF 420 GVKITEPAADLAVLLAI+SSMR++PLPRGLVVFGEVGLAGEIRPAPRGQERLREAAKLGF Sbjct: 360 GVKITEPAADLAVLLAIHSSMRSRPLPRGLVVFGEVGLAGEIRPAPRGQERLREAAKLGF 419 Query: 421 SIAVIPKANAPKQAIEGLKVIAVERIDDALQKARE 455 S+A+IPK+NAPKQ IEGL +I VERID+AL + RE Sbjct: 420 SLALIPKSNAPKQKIEGLTIIGVERIDEALNRVRE 454 >ref|ZP_08273285.1| DNA repair protein RadA [Oxalobacteraceae bacterium IMCC9480] gb|EGF33245.1| DNA repair protein RadA [Oxalobacteraceae bacterium IMCC9480] Length = 460 Score = 808 bits (2086), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/457 (89%), Positives = 436/457 (95%), Gaps = 2/457 (0%) Query: 1 MAKVKTNYTCTECGGVSNKWAGQCPACGQWNTLVETLVEPAGGNRYSN--SPQSLAQTAP 58 MAKVKTN+TC+ECGG+SNKW GQCP+CGQWN+LVET +E AG NR S +P SLAQTAP Sbjct: 1 MAKVKTNFTCSECGGISNKWTGQCPSCGQWNSLVETQIESAGINRLSQQAAPVSLAQTAP 60 Query: 59 VLSLADIEAIDVPRFGTGIEEFDRVLGGGLVPGGVALIGGDPGIGKSTLLLQALANISRL 118 VLSLADIEA++VPRFGTGIEEFDRVLGGGLVPGGV LIGGDPGIGKSTLLLQALAN+SR Sbjct: 61 VLSLADIEAVEVPRFGTGIEEFDRVLGGGLVPGGVVLIGGDPGIGKSTLLLQALANLSRS 120 Query: 119 KKVLYVSGEESGAQIALRAKRLAVDARELQLQAEIQLEKILATLAEHKPEVAVIDSIQTL 178 KKVLYVSGEESGAQIALRAKRLAVDA++LQLQAEIQLEKIL TLAEHKP+VAVIDSIQT+ Sbjct: 121 KKVLYVSGEESGAQIALRAKRLAVDAKDLQLQAEIQLEKILYTLAEHKPDVAVIDSIQTV 180 Query: 179 YSDALTSAPGSVAQVRECAAQLTRVAKTSGITIIMVGHVTKEGALAGPRVLEHIVDTVLY 238 YSDAL+SAPGSVAQVRECAAQLTR AK +G+TIIMVGHVTKEGALAGPRVLEHIVDTVLY Sbjct: 181 YSDALSSAPGSVAQVRECAAQLTRTAKQTGVTIIMVGHVTKEGALAGPRVLEHIVDTVLY 240 Query: 239 FEGDTHSSFRLVRAFKNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQHENQVPGSCVMV 298 FEGDTHSSFRLVRA KNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQH+NQVPGSCVMV Sbjct: 241 FEGDTHSSFRLVRAVKNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQHDNQVPGSCVMV 300 Query: 299 TQEGTRPLLVEIQALVDSSHVPNARRLSVGLEQNRLAMLLAVLHRHAGVAAFDQDVFINA 358 TQEGTRPLLVEIQALVD+SH PNARRLSVGL+QNRLAMLLAVLHRHAGVAAFDQDVFINA Sbjct: 301 TQEGTRPLLVEIQALVDTSHAPNARRLSVGLDQNRLAMLLAVLHRHAGVAAFDQDVFINA 360 Query: 359 VGGVKITEPAADLAVLLAINSSMRNKPLPRGLVVFGEVGLAGEIRPAPRGQERLREAAKL 418 VGGVKITEPAADLAV+LAI SS+RNKPLPRGLVVFGEVGLAGEIRPAPRGQERLREAAKL Sbjct: 361 VGGVKITEPAADLAVMLAIQSSLRNKPLPRGLVVFGEVGLAGEIRPAPRGQERLREAAKL 420 Query: 419 GFSIAVIPKANAPKQAIEGLKVIAVERIDDALQKARE 455 GFSIA+IPKANAPK +EGL +IAVERID+AL+K R+ Sbjct: 421 GFSIAMIPKANAPKGKVEGLTIIAVERIDEALEKIRD 457 >ref|YP_001100039.1| DNA repair protein RadA [Herminiimonas arsenicoxydans] emb|CAL61914.1| DNA repair protein RadA (DNA repair protein Sms) [Herminiimonas arsenicoxydans] Length = 456 Score = 798 bits (2061), Expect = 0.0, Method: Compositional matrix adjust. Identities = 401/455 (88%), Positives = 433/455 (95%), Gaps = 1/455 (0%) Query: 1 MAKVKTNYTCTECGGVSNKWAGQCPACGQWNTLVETLVEPAGGNRYSNSPQSLAQTAPVL 60 MAK KTNYTC+ECGG+SNKW GQCP+C WNTLVET+VE G NRYS Q LAQ+APVL Sbjct: 1 MAKAKTNYTCSECGGISNKWGGQCPSCNAWNTLVETVVE-TGTNRYSAQHQGLAQSAPVL 59 Query: 61 SLADIEAIDVPRFGTGIEEFDRVLGGGLVPGGVALIGGDPGIGKSTLLLQALANISRLKK 120 SLADIEAIDVPRFGTGIEEFDRVLGGGLV GGV LIGGDPGIGKSTLLLQALAN+S++KK Sbjct: 60 SLADIEAIDVPRFGTGIEEFDRVLGGGLVAGGVVLIGGDPGIGKSTLLLQALANLSKIKK 119 Query: 121 VLYVSGEESGAQIALRAKRLAVDARELQLQAEIQLEKILATLAEHKPEVAVIDSIQTLYS 180 VLYVSGEESGAQIALRAKRLAVDA++L+LQAEIQLEKIL TLAEHKP+VAVIDSIQT+YS Sbjct: 120 VLYVSGEESGAQIALRAKRLAVDAKDLKLQAEIQLEKILNTLAEHKPDVAVIDSIQTVYS 179 Query: 181 DALTSAPGSVAQVRECAAQLTRVAKTSGITIIMVGHVTKEGALAGPRVLEHIVDTVLYFE 240 DAL+SAPGSVAQVRECAAQLTR+AK +G+TIIMVGHVTKEGALAGPRVLEHIVDTVLYFE Sbjct: 180 DALSSAPGSVAQVRECAAQLTRIAKQTGVTIIMVGHVTKEGALAGPRVLEHIVDTVLYFE 239 Query: 241 GDTHSSFRLVRAFKNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQHENQVPGSCVMVTQ 300 GDTHSSFRLVRA KNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQH++ V G+CVMVTQ Sbjct: 240 GDTHSSFRLVRAIKNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQHDSPVSGACVMVTQ 299 Query: 301 EGTRPLLVEIQALVDSSHVPNARRLSVGLEQNRLAMLLAVLHRHAGVAAFDQDVFINAVG 360 EGTRPLLVEIQALVD+SH+PNARRLSVGLEQNRLAMLLAVLHRHAG+AAFDQDVFINAVG Sbjct: 300 EGTRPLLVEIQALVDTSHLPNARRLSVGLEQNRLAMLLAVLHRHAGIAAFDQDVFINAVG 359 Query: 361 GVKITEPAADLAVLLAINSSMRNKPLPRGLVVFGEVGLAGEIRPAPRGQERLREAAKLGF 420 GVKITEPAADLAVLLAI+SSMR++PLPRGLVVFGEVGLAGEIRPAPRGQERLREAAKLGF Sbjct: 360 GVKITEPAADLAVLLAIHSSMRSRPLPRGLVVFGEVGLAGEIRPAPRGQERLREAAKLGF 419 Query: 421 SIAVIPKANAPKQAIEGLKVIAVERIDDALQKARE 455 S+A+IPK+NAPKQ IEGL +IAVERID+AL + RE Sbjct: 420 SLALIPKSNAPKQKIEGLTIIAVERIDEALNRVRE 454 >ref|ZP_04576553.1| RadA DNA repair protein [Oxalobacter formigenes HOxBLS] gb|EEO27515.1| RadA DNA repair protein [Oxalobacter formigenes HOxBLS] Length = 456 Score = 763 bits (1969), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/456 (84%), Positives = 416/456 (91%) Query: 1 MAKVKTNYTCTECGGVSNKWAGQCPACGQWNTLVETLVEPAGGNRYSNSPQSLAQTAPVL 60 MAK K YTCTECGG+S+KWAG+CPACGQWNTLVETLVE A NR+S + Q LAQTAPVL Sbjct: 1 MAKAKIQYTCTECGGISSKWAGKCPACGQWNTLVETLVESAPANRFSGNRQGLAQTAPVL 60 Query: 61 SLADIEAIDVPRFGTGIEEFDRVLGGGLVPGGVALIGGDPGIGKSTLLLQALANISRLKK 120 SL+DI+AIDVPRF +GI EFDRVLGGGLVPGGV LIGGDPGIGKSTLLLQAL N++ K Sbjct: 61 SLSDIDAIDVPRFHSGIGEFDRVLGGGLVPGGVVLIGGDPGIGKSTLLLQALVNLASSKN 120 Query: 121 VLYVSGEESGAQIALRAKRLAVDARELQLQAEIQLEKILATLAEHKPEVAVIDSIQTLYS 180 VLYVSGEESG+Q+ALRAKRL + A LQLQAEIQLEKIL TL+EHKPEVAVIDSIQTLYS Sbjct: 121 VLYVSGEESGSQVALRAKRLGLTAANLQLQAEIQLEKILGTLSEHKPEVAVIDSIQTLYS 180 Query: 181 DALTSAPGSVAQVRECAAQLTRVAKTSGITIIMVGHVTKEGALAGPRVLEHIVDTVLYFE 240 DALTSAPGSVAQVRECAAQLTR AK SG TIIMVGHVTKEGALAGPRVLEHIVDTVLYFE Sbjct: 181 DALTSAPGSVAQVRECAAQLTRFAKQSGTTIIMVGHVTKEGALAGPRVLEHIVDTVLYFE 240 Query: 241 GDTHSSFRLVRAFKNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQHENQVPGSCVMVTQ 300 GDTHSSFRL+RAFKNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQHE Q+ GSCVM T Sbjct: 241 GDTHSSFRLIRAFKNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQHERQIAGSCVMATL 300 Query: 301 EGTRPLLVEIQALVDSSHVPNARRLSVGLEQNRLAMLLAVLHRHAGVAAFDQDVFINAVG 360 EG RPLLVEIQALVD+S PNARRLSVGLEQNRLAMLLAV+HRHA +AA+DQDVFINAVG Sbjct: 301 EGMRPLLVEIQALVDTSPTPNARRLSVGLEQNRLAMLLAVMHRHANIAAYDQDVFINAVG 360 Query: 361 GVKITEPAADLAVLLAINSSMRNKPLPRGLVVFGEVGLAGEIRPAPRGQERLREAAKLGF 420 GV+I+EPAADLAVLLAI+SS+RNKPLPRGLVVFGEVGLAGEIRPAPRGQ+RLREA KLGF Sbjct: 361 GVRISEPAADLAVLLAIHSSLRNKPLPRGLVVFGEVGLAGEIRPAPRGQDRLREAVKLGF 420 Query: 421 SIAVIPKANAPKQAIEGLKVIAVERIDDALQKAREI 456 SIA+IPK+NAPKQ EGL VI VERID+A + RE+ Sbjct: 421 SIALIPKSNAPKQPFEGLTVIGVERIDEAFDRIREL 456 >ref|ZP_04578964.1| RadA DNA repair protein [Oxalobacter formigenes OXCC13] gb|EEO29937.1| RadA DNA repair protein [Oxalobacter formigenes OXCC13] Length = 456 Score = 748 bits (1930), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/456 (82%), Positives = 413/456 (90%), Gaps = 1/456 (0%) Query: 1 MAKVKTNYTCTECGGVSNKWAGQCPACGQWNTLVETLVEPAGGNRYSNSPQSLAQTAPVL 60 MAK K YTCTECGG+S+KWAG+CPACGQWNTLVET++E + NR+S + Q +AQTAPVL Sbjct: 1 MAKAKIQYTCTECGGISSKWAGKCPACGQWNTLVETVIE-SSANRFSTNRQGIAQTAPVL 59 Query: 61 SLADIEAIDVPRFGTGIEEFDRVLGGGLVPGGVALIGGDPGIGKSTLLLQALANISRLKK 120 SLADI+AIDVPRF +GI EFDRVLGGGLV GGV LIGGDPGIGKSTLLLQ L N+++ K Sbjct: 60 SLADIDAIDVPRFESGINEFDRVLGGGLVSGGVVLIGGDPGIGKSTLLLQTLVNLAQHKN 119 Query: 121 VLYVSGEESGAQIALRAKRLAVDARELQLQAEIQLEKILATLAEHKPEVAVIDSIQTLYS 180 VLYVSGEESGAQ+ALRAKRL + A+ LQLQAEIQLEKI+ TL + KPEVAV+DSIQT+YS Sbjct: 120 VLYVSGEESGAQVALRAKRLGLTAQNLQLQAEIQLEKIIGTLDKLKPEVAVVDSIQTIYS 179 Query: 181 DALTSAPGSVAQVRECAAQLTRVAKTSGITIIMVGHVTKEGALAGPRVLEHIVDTVLYFE 240 DALTSAPGSVAQVRECAAQLTR AK SG TIIMVGHVTKEGALAGPRVLEHIVDTVLYFE Sbjct: 180 DALTSAPGSVAQVRECAAQLTRFAKQSGTTIIMVGHVTKEGALAGPRVLEHIVDTVLYFE 239 Query: 241 GDTHSSFRLVRAFKNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQHENQVPGSCVMVTQ 300 GD HSSFRL+RAFKNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQH+ ++ GSCVM T Sbjct: 240 GDAHSSFRLIRAFKNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQHQREIAGSCVMATL 299 Query: 301 EGTRPLLVEIQALVDSSHVPNARRLSVGLEQNRLAMLLAVLHRHAGVAAFDQDVFINAVG 360 EG RPLLVEIQALVD+S PNARRLSVGLEQNRLAMLLAV+HRHA +AA+DQDVFINAVG Sbjct: 300 EGMRPLLVEIQALVDASPTPNARRLSVGLEQNRLAMLLAVMHRHANIAAYDQDVFINAVG 359 Query: 361 GVKITEPAADLAVLLAINSSMRNKPLPRGLVVFGEVGLAGEIRPAPRGQERLREAAKLGF 420 GVKI+EPAADLAVLLAINSS+RNKPLPRGLVVFGEVGLAGEIRPAPRGQ+RL+EA KLGF Sbjct: 360 GVKISEPAADLAVLLAINSSLRNKPLPRGLVVFGEVGLAGEIRPAPRGQDRLKEAVKLGF 419 Query: 421 SIAVIPKANAPKQAIEGLKVIAVERIDDALQKAREI 456 S+A+IPKANAPKQ EGL VI VERID+A + RE+ Sbjct: 420 SMAIIPKANAPKQPFEGLTVIGVERIDEAFDRLREL 455 >ref|YP_004228662.1| DNA repair protein RadA [Burkholderia sp. CCGE1001] gb|ADX55602.1| DNA repair protein RadA [Burkholderia sp. CCGE1001] Length = 458 Score = 722 bits (1863), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/462 (79%), Positives = 411/462 (88%), Gaps = 9/462 (1%) Query: 1 MAKVKTNYTCTECGGVSNKWAGQCPACGQWNTLVETLVEPAGGNRYSNSPQSLAQTAPVL 60 MAK KT Y C+ECGG S KW GQCP+C WNTLVE++ E +R+ QSLA++APV Sbjct: 1 MAKAKTLYVCSECGGQSPKWTGQCPSCQAWNTLVESVAEAPSTHRF----QSLAKSAPVR 56 Query: 61 SLADIEAIDVPRFGTGIEEFDRVLGGGLVPGGVALIGGDPGIGKSTLLLQALANISRLKK 120 LADIEA DVPRF TG+ EFDRVLGGGLVPGGV LIGGDPGIGKSTLLLQ+LA I+ K+ Sbjct: 57 RLADIEASDVPRFSTGVSEFDRVLGGGLVPGGVVLIGGDPGIGKSTLLLQSLAEIAAEKR 116 Query: 121 VLYVSGEESGAQIALRAKRLAV-----DARELQLQAEIQLEKILATLAEHKPEVAVIDSI 175 LY+SGEES AQIALRA+RL++ A ELQL AEIQLEKI AT+A+ +P+VAVIDSI Sbjct: 117 ALYISGEESAAQIALRAQRLSLLEPGSKASELQLLAEIQLEKIQATIADQRPDVAVIDSI 176 Query: 176 QTLYSDALTSAPGSVAQVRECAAQLTRVAKTSGITIIMVGHVTKEGALAGPRVLEHIVDT 235 QT+YSDALTSAPGSVAQVRECAAQLTR+AK SG TIIMVGHVTKEGALAGPRVLEHIVDT Sbjct: 177 QTVYSDALTSAPGSVAQVRECAAQLTRIAKQSGTTIIMVGHVTKEGALAGPRVLEHIVDT 236 Query: 236 VLYFEGDTHSSFRLVRAFKNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQHENQVPGSC 295 VLYFEGDTHSSFRLVRA KNRFGAVNELGVFAMTE+GL+GV+NPSALFLSQHE VPGSC Sbjct: 237 VLYFEGDTHSSFRLVRAIKNRFGAVNELGVFAMTERGLRGVANPSALFLSQHEQSVPGSC 296 Query: 296 VMVTQEGTRPLLVEIQALVDSSHVPNARRLSVGLEQNRLAMLLAVLHRHAGVAAFDQDVF 355 V+VTQEGTRPLLVE+QALVDS++ PN RRL+VGLEQNRLAMLLAVLHRHAG+A FDQDVF Sbjct: 297 VLVTQEGTRPLLVEVQALVDSANAPNPRRLAVGLEQNRLAMLLAVLHRHAGIACFDQDVF 356 Query: 356 INAVGGVKITEPAADLAVLLAINSSMRNKPLPRGLVVFGEVGLAGEIRPAPRGQERLREA 415 +NAVGGVKITEPAADLAVLLAI+SSMRNKPLP+GLVVFGEVGLAGEIRP+PRGQERL+EA Sbjct: 357 LNAVGGVKITEPAADLAVLLAIHSSMRNKPLPKGLVVFGEVGLAGEIRPSPRGQERLKEA 416 Query: 416 AKLGFSIAVIPKANAPKQAIEGLKVIAVERIDDALQKAREID 457 AKLGFS+AVIPKANAPKQ IEGL+V+AVERI+ A+ + R +D Sbjct: 417 AKLGFSVAVIPKANAPKQPIEGLQVVAVERIEQAIDRVRTLD 458 >ref|ZP_02887623.1| DNA repair protein RadA [Burkholderia graminis C4D1M] gb|EDT06804.1| DNA repair protein RadA [Burkholderia graminis C4D1M] Length = 458 Score = 719 bits (1857), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/462 (79%), Positives = 412/462 (89%), Gaps = 9/462 (1%) Query: 1 MAKVKTNYTCTECGGVSNKWAGQCPACGQWNTLVETLVEPAGGNRYSNSPQSLAQTAPVL 60 MAK KT Y C+ECGG S KWAGQCP+C WNTLVE++ E +R+ QSLA++APV Sbjct: 1 MAKAKTLYVCSECGGQSPKWAGQCPSCQAWNTLVESVAEAPSTHRF----QSLAKSAPVR 56 Query: 61 SLADIEAIDVPRFGTGIEEFDRVLGGGLVPGGVALIGGDPGIGKSTLLLQALANISRLKK 120 LADIEA DVPRF TG+ EFDRVLGGGLVPGGV LIGGDPGIGKSTLLLQ+LA I+ K+ Sbjct: 57 RLADIEASDVPRFTTGVGEFDRVLGGGLVPGGVVLIGGDPGIGKSTLLLQSLAEIAADKR 116 Query: 121 VLYVSGEESGAQIALRAKRLAV-----DARELQLQAEIQLEKILATLAEHKPEVAVIDSI 175 LY+SGEES AQIALRA+RL++ A ELQL AEIQLEKI AT+A+ +P+VAVIDSI Sbjct: 117 ALYISGEESAAQIALRAQRLSLLEPGSKASELQLLAEIQLEKIQATIADQRPDVAVIDSI 176 Query: 176 QTLYSDALTSAPGSVAQVRECAAQLTRVAKTSGITIIMVGHVTKEGALAGPRVLEHIVDT 235 QT+YSDALTSAPGSVAQVRECAAQLTR+AK SG TIIMVGHVTKEGALAGPRVLEHIVDT Sbjct: 177 QTVYSDALTSAPGSVAQVRECAAQLTRIAKQSGTTIIMVGHVTKEGALAGPRVLEHIVDT 236 Query: 236 VLYFEGDTHSSFRLVRAFKNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQHENQVPGSC 295 VLYFEGDTHSSFRLVRA KNRFGAVNELGVFAMTE+GL+GV+NPSALFLSQHE VPGSC Sbjct: 237 VLYFEGDTHSSFRLVRAIKNRFGAVNELGVFAMTERGLRGVANPSALFLSQHEQSVPGSC 296 Query: 296 VMVTQEGTRPLLVEIQALVDSSHVPNARRLSVGLEQNRLAMLLAVLHRHAGVAAFDQDVF 355 V+VTQEGTRPLLVE+QALVDS++ PN RRL+VGLEQNRLAMLLAVLHRHAG+A FDQDVF Sbjct: 297 VLVTQEGTRPLLVEVQALVDSANAPNPRRLAVGLEQNRLAMLLAVLHRHAGIACFDQDVF 356 Query: 356 INAVGGVKITEPAADLAVLLAINSSMRNKPLPRGLVVFGEVGLAGEIRPAPRGQERLREA 415 +NAVGGVKITEPAADLAVLLAI+SSMRNKPLP+GLVVFGEVGLAGEIRP+PRGQERL+EA Sbjct: 357 LNAVGGVKITEPAADLAVLLAIHSSMRNKPLPKGLVVFGEVGLAGEIRPSPRGQERLKEA 416 Query: 416 AKLGFSIAVIPKANAPKQAIEGLKVIAVERIDDALQKAREID 457 AKLGFS+AVIPKANAPKQ IEGL+V+AVERI+ A+ + R ++ Sbjct: 417 AKLGFSVAVIPKANAPKQPIEGLQVVAVERIEQAIDRVRTLE 458 >ref|ZP_06841755.1| DNA repair protein RadA [Burkholderia sp. Ch1-1] gb|EFG70592.1| DNA repair protein RadA [Burkholderia sp. Ch1-1] Length = 458 Score = 719 bits (1856), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/462 (79%), Positives = 412/462 (89%), Gaps = 9/462 (1%) Query: 1 MAKVKTNYTCTECGGVSNKWAGQCPACGQWNTLVETLVEPAGGNRYSNSPQSLAQTAPVL 60 MAK KT Y C+ECGG S KWAGQCP+C WNTLVE++ E +R+ QSLA++APV Sbjct: 1 MAKPKTVYICSECGGQSPKWAGQCPSCNAWNTLVESVAEAPSTHRF----QSLAKSAPVR 56 Query: 61 SLADIEAIDVPRFGTGIEEFDRVLGGGLVPGGVALIGGDPGIGKSTLLLQALANISRLKK 120 LADIEA D+PRF TG+ EFDRVLGGGLVPGGV LIGGDPGIGKSTLLLQ+LA I+ K+ Sbjct: 57 RLADIEASDIPRFTTGVSEFDRVLGGGLVPGGVVLIGGDPGIGKSTLLLQSLAEIAADKR 116 Query: 121 VLYVSGEESGAQIALRAKRLAV-----DARELQLQAEIQLEKILATLAEHKPEVAVIDSI 175 LY+SGEES AQIALRA+RL++ A ELQL AEIQLEKI AT+AE +P+VAVIDSI Sbjct: 117 ALYISGEESAAQIALRAQRLSLLEPGSKASELQLLAEIQLEKIQATIAEQRPDVAVIDSI 176 Query: 176 QTLYSDALTSAPGSVAQVRECAAQLTRVAKTSGITIIMVGHVTKEGALAGPRVLEHIVDT 235 QT+YSDALTSAPGSVAQVRECAAQLTR+AK SG TIIMVGHVTKEGALAGPRVLEHIVDT Sbjct: 177 QTVYSDALTSAPGSVAQVRECAAQLTRIAKQSGTTIIMVGHVTKEGALAGPRVLEHIVDT 236 Query: 236 VLYFEGDTHSSFRLVRAFKNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQHENQVPGSC 295 VLYFEGDTHSS+RLVRA KNRFGAVNELGVFAMTE+GL+GV+NPSALFLSQHE VPGSC Sbjct: 237 VLYFEGDTHSSYRLVRAIKNRFGAVNELGVFAMTERGLRGVANPSALFLSQHEQSVPGSC 296 Query: 296 VMVTQEGTRPLLVEIQALVDSSHVPNARRLSVGLEQNRLAMLLAVLHRHAGVAAFDQDVF 355 V+VTQEGTRPLLVE+QALVD+++ PN RRL+VGLEQNRLAMLLAVLHRHAG+A FDQDVF Sbjct: 297 VLVTQEGTRPLLVEVQALVDAANAPNPRRLAVGLEQNRLAMLLAVLHRHAGIACFDQDVF 356 Query: 356 INAVGGVKITEPAADLAVLLAINSSMRNKPLPRGLVVFGEVGLAGEIRPAPRGQERLREA 415 +NAVGGVKITEPAADLAVLLAI+SSMRNKPLP+GLVVFGEVGLAGEIRP+PRGQERL+EA Sbjct: 357 LNAVGGVKITEPAADLAVLLAIHSSMRNKPLPKGLVVFGEVGLAGEIRPSPRGQERLKEA 416 Query: 416 AKLGFSIAVIPKANAPKQAIEGLKVIAVERIDDALQKAREID 457 AKLGFS+AVIPKANAPKQ IEGL+V+AVERI+ A+ + R ++ Sbjct: 417 AKLGFSVAVIPKANAPKQPIEGLQVVAVERIEQAIDRVRTLE 458