BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0117.p (178 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775576.1| N-formylmethionyl-tRNA deformylase/polypepti... 361 2e-98 ref|YP_004751952.1| peptide deformylase [Collimonas fungivorans ... 293 6e-78 ref|ZP_03270994.1| peptide deformylase [Burkholderia sp. H160] >... 285 2e-75 ref|YP_003605352.1| peptide deformylase [Burkholderia sp. CCGE10... 283 5e-75 ref|YP_559330.1| peptide deformylase [Burkholderia xenovorans LB... 281 3e-74 ref|YP_004029161.1| peptide deformylase [Burkholderia rhizoxinic... 280 6e-74 ref|ZP_02883300.1| peptide deformylase [Burkholderia graminis C4... 280 6e-74 ref|YP_001896080.1| peptide deformylase [Burkholderia phytofirma... 280 6e-74 ref|YP_003906552.1| peptide deformylase [Burkholderia sp. CCGE10... 279 1e-73 ref|YP_004619152.1| peptide deformylase [Ramlibacter tataouinens... 279 1e-73 >ref|YP_003775576.1| N-formylmethionyl-tRNA deformylase/polypeptide deformylase [Herbaspirillum seropedicae SmR1] gb|ADJ63668.1| N-formylmethionyl-tRNA deformylase/polypeptide deformylase protein [Herbaspirillum seropedicae SmR1] Length = 178 Score = 361 bits (927), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 178/178 (100%), Positives = 178/178 (100%) Query: 1 MAIREILKMGDPRLLRQAQPVTEFGTPELARLVDDMFQTMRAVNGAGLAAPQIGVDLQLV 60 MAIREILKMGDPRLLRQAQPVTEFGTPELARLVDDMFQTMRAVNGAGLAAPQIGVDLQLV Sbjct: 1 MAIREILKMGDPRLLRQAQPVTEFGTPELARLVDDMFQTMRAVNGAGLAAPQIGVDLQLV 60 Query: 61 IFGFGQNQRYPDAPPVPETVLINPVLTPLSEQEEEGWEGCLSVPGMRGVVPRWSRLRYQG 120 IFGFGQNQRYPDAPPVPETVLINPVLTPLSEQEEEGWEGCLSVPGMRGVVPRWSRLRYQG Sbjct: 61 IFGFGQNQRYPDAPPVPETVLINPVLTPLSEQEEEGWEGCLSVPGMRGVVPRWSRLRYQG 120 Query: 121 VDQNGEPIDRSVEGFHARVVQHECDHLQGILYPMRIRDFRRFGFTEVLFPELDPSQDD 178 VDQNGEPIDRSVEGFHARVVQHECDHLQGILYPMRIRDFRRFGFTEVLFPELDPSQDD Sbjct: 121 VDQNGEPIDRSVEGFHARVVQHECDHLQGILYPMRIRDFRRFGFTEVLFPELDPSQDD 178 >ref|YP_004751952.1| peptide deformylase [Collimonas fungivorans Ter331] gb|AEK61129.1| Peptide deformylase [Collimonas fungivorans Ter331] Length = 178 Score = 293 bits (751), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 139/178 (78%), Positives = 151/178 (84%) Query: 1 MAIREILKMGDPRLLRQAQPVTEFGTPELARLVDDMFQTMRAVNGAGLAAPQIGVDLQLV 60 M +REILKMGDPRLLRQA+PVT FGTPEL L+ DMF TM A NGAGLAAPQIGV+LQLV Sbjct: 1 MTVREILKMGDPRLLRQAEPVTAFGTPELEALIADMFDTMYAANGAGLAAPQIGVNLQLV 60 Query: 61 IFGFGQNQRYPDAPPVPETVLINPVLTPLSEQEEEGWEGCLSVPGMRGVVPRWSRLRYQG 120 IFGF N RYPDAP VPETVLINPVL PLS+ E+GWEGCLSVPG+RGVVPRW+ L Y+G Sbjct: 61 IFGFKNNVRYPDAPAVPETVLINPVLRPLSDDTEDGWEGCLSVPGLRGVVPRWTSLHYEG 120 Query: 121 VDQNGEPIDRSVEGFHARVVQHECDHLQGILYPMRIRDFRRFGFTEVLFPELDPSQDD 178 DQ G I R V+GFHARVVQHE DHL GILYPMRI+DF RFGFTEVLFPELDP+ DD Sbjct: 121 FDQTGAAISRDVDGFHARVVQHETDHLNGILYPMRIKDFTRFGFTEVLFPELDPNHDD 178 >ref|ZP_03270994.1| peptide deformylase [Burkholderia sp. H160] gb|EDZ97427.1| peptide deformylase [Burkholderia sp. H160] Length = 177 Score = 285 bits (729), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 135/176 (76%), Positives = 149/176 (84%) Query: 3 IREILKMGDPRLLRQAQPVTEFGTPELARLVDDMFQTMRAVNGAGLAAPQIGVDLQLVIF 62 I +ILKMGDPRLLR A+PV F TPEL RLV DMF+TM A NGAGLAAPQIGVDLQ+VIF Sbjct: 2 IHDILKMGDPRLLRIAEPVDHFDTPELHRLVADMFETMHAANGAGLAAPQIGVDLQVVIF 61 Query: 63 GFGQNQRYPDAPPVPETVLINPVLTPLSEQEEEGWEGCLSVPGMRGVVPRWSRLRYQGVD 122 GFG N+RYPDAPPVPETVLINP +TP+S+ EE WEGCLSVPG+RGVV R+S +RY G D Sbjct: 62 GFGSNERYPDAPPVPETVLINPTITPVSQDMEESWEGCLSVPGLRGVVSRFSMIRYHGFD 121 Query: 123 QNGEPIDRSVEGFHARVVQHECDHLQGILYPMRIRDFRRFGFTEVLFPELDPSQDD 178 Q G PIDR EGFHARVVQHECDHL G LYPMRI DF +FGFTEVLFP+LDP+ DD Sbjct: 122 QFGNPIDRVAEGFHARVVQHECDHLIGKLYPMRITDFSKFGFTEVLFPDLDPNSDD 177 >ref|YP_003605352.1| peptide deformylase [Burkholderia sp. CCGE1002] gb|ADG15841.1| peptide deformylase [Burkholderia sp. CCGE1002] Length = 177 Score = 283 bits (725), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 133/176 (75%), Positives = 150/176 (85%) Query: 3 IREILKMGDPRLLRQAQPVTEFGTPELARLVDDMFQTMRAVNGAGLAAPQIGVDLQLVIF 62 I +ILKMGDPRLLR A+PV F TPEL RLV+DMF+TM A NGAGLAAPQIGV+LQ+VIF Sbjct: 2 IHDILKMGDPRLLRIAEPVDHFDTPELHRLVEDMFETMHAANGAGLAAPQIGVNLQVVIF 61 Query: 63 GFGQNQRYPDAPPVPETVLINPVLTPLSEQEEEGWEGCLSVPGMRGVVPRWSRLRYQGVD 122 GFG N+RYPDAPPVPETVLINP +TP+S+ EE WEGCLSVPG+RGVV R+S +RY G D Sbjct: 62 GFGSNERYPDAPPVPETVLINPTITPVSQDMEESWEGCLSVPGLRGVVSRFSMIRYHGFD 121 Query: 123 QNGEPIDRSVEGFHARVVQHECDHLQGILYPMRIRDFRRFGFTEVLFPELDPSQDD 178 Q G PIDR EGFHARVVQHECDHL G LYPMRI DF +FGFTE+LFP+LDP+ DD Sbjct: 122 QFGNPIDRVAEGFHARVVQHECDHLIGKLYPMRITDFSKFGFTEILFPDLDPNSDD 177 >ref|YP_559330.1| peptide deformylase [Burkholderia xenovorans LB400] ref|ZP_06841739.1| peptide deformylase [Burkholderia sp. Ch1-1] gb|ABE31278.1| Formylmethionine deformylase [Burkholderia xenovorans LB400] gb|EFG70576.1| peptide deformylase [Burkholderia sp. Ch1-1] Length = 177 Score = 281 bits (719), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 132/176 (75%), Positives = 148/176 (84%) Query: 3 IREILKMGDPRLLRQAQPVTEFGTPELARLVDDMFQTMRAVNGAGLAAPQIGVDLQLVIF 62 IREILKMGDPRLLR A PV F TPEL LV DMF+TM NGAGLAAPQIGV+LQ+VIF Sbjct: 2 IREILKMGDPRLLRIADPVDHFDTPELHELVKDMFETMHDANGAGLAAPQIGVNLQVVIF 61 Query: 63 GFGQNQRYPDAPPVPETVLINPVLTPLSEQEEEGWEGCLSVPGMRGVVPRWSRLRYQGVD 122 GFG N+RYPDAPPVPETVLINP +TP+S+ EEGWEGCLSVPG+RG V R+S ++Y G D Sbjct: 62 GFGHNERYPDAPPVPETVLINPTITPVSQDMEEGWEGCLSVPGLRGAVSRFSMIKYHGFD 121 Query: 123 QNGEPIDRSVEGFHARVVQHECDHLQGILYPMRIRDFRRFGFTEVLFPELDPSQDD 178 Q G+PIDR EGFHARVVQHECDHL G LYPMRI DF +FGFTEVLFP++DP+ DD Sbjct: 122 QYGKPIDRVAEGFHARVVQHECDHLIGKLYPMRINDFAKFGFTEVLFPDMDPNSDD 177 >ref|YP_004029161.1| peptide deformylase [Burkholderia rhizoxinica HKI 454] emb|CBW75017.1| Peptide deformylase (EC 3.5.1.88) [Burkholderia rhizoxinica HKI 454] Length = 177 Score = 280 bits (716), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 134/176 (76%), Positives = 149/176 (84%) Query: 3 IREILKMGDPRLLRQAQPVTEFGTPELARLVDDMFQTMRAVNGAGLAAPQIGVDLQLVIF 62 I EILKMGDPRLLR A+PV F TPEL +L+ DMF+TMRA NGAGLAAPQIGVDLQ+VIF Sbjct: 2 IHEILKMGDPRLLRMAKPVDRFNTPELHQLIQDMFETMRAANGAGLAAPQIGVDLQVVIF 61 Query: 63 GFGQNQRYPDAPPVPETVLINPVLTPLSEQEEEGWEGCLSVPGMRGVVPRWSRLRYQGVD 122 GFGQN RYPDAP VPETVLINP++TP+S EEGWEGCLSVPG+RG+V R S +RY+G D Sbjct: 62 GFGQNARYPDAPAVPETVLINPMITPVSLDMEEGWEGCLSVPGLRGIVSRLSMIRYEGHD 121 Query: 123 QNGEPIDRSVEGFHARVVQHECDHLQGILYPMRIRDFRRFGFTEVLFPELDPSQDD 178 Q G+PIDR EGFHARVVQHECDHL G LYPMRI DF FGFT+VLFP+LDP DD Sbjct: 122 QYGQPIDRIAEGFHARVVQHECDHLIGRLYPMRITDFSNFGFTKVLFPDLDPLSDD 177 >ref|ZP_02883300.1| peptide deformylase [Burkholderia graminis C4D1M] gb|EDT10732.1| peptide deformylase [Burkholderia graminis C4D1M] Length = 177 Score = 280 bits (716), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 132/176 (75%), Positives = 147/176 (83%) Query: 3 IREILKMGDPRLLRQAQPVTEFGTPELARLVDDMFQTMRAVNGAGLAAPQIGVDLQLVIF 62 IREILKMGDPRLLR A PV F TPEL L+ DMF+TM NGAGLAAPQIGV+LQ+VIF Sbjct: 2 IREILKMGDPRLLRIADPVDHFDTPELHELIKDMFETMHDANGAGLAAPQIGVNLQVVIF 61 Query: 63 GFGQNQRYPDAPPVPETVLINPVLTPLSEQEEEGWEGCLSVPGMRGVVPRWSRLRYQGVD 122 GFG N+RYPDAPPVPETVLINP +TP+S EEGWEGCLSVPG+RG V R+S ++Y G D Sbjct: 62 GFGSNERYPDAPPVPETVLINPTITPVSLDMEEGWEGCLSVPGLRGAVSRFSMIKYHGFD 121 Query: 123 QNGEPIDRSVEGFHARVVQHECDHLQGILYPMRIRDFRRFGFTEVLFPELDPSQDD 178 Q G+PIDR EGFHARVVQHECDHL G LYPMRI DF +FGFTEVLFP+LDP+ DD Sbjct: 122 QYGKPIDRVAEGFHARVVQHECDHLIGKLYPMRINDFAKFGFTEVLFPDLDPNSDD 177 >ref|YP_001896080.1| peptide deformylase [Burkholderia phytofirmans PsJN] gb|ACD16856.1| peptide deformylase [Burkholderia phytofirmans PsJN] Length = 177 Score = 280 bits (716), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 132/176 (75%), Positives = 147/176 (83%) Query: 3 IREILKMGDPRLLRQAQPVTEFGTPELARLVDDMFQTMRAVNGAGLAAPQIGVDLQLVIF 62 IREILKMGDPRLLR A PV F TPEL LV DMF+TM NGAGLAAPQIGV+LQ+VIF Sbjct: 2 IREILKMGDPRLLRIADPVDHFDTPELHELVKDMFETMHDANGAGLAAPQIGVNLQVVIF 61 Query: 63 GFGQNQRYPDAPPVPETVLINPVLTPLSEQEEEGWEGCLSVPGMRGVVPRWSRLRYQGVD 122 GFG N+RYPDAPPVPETVLINP +TP+S EEGWEGCLSVPG+RG V R+S ++Y G D Sbjct: 62 GFGHNERYPDAPPVPETVLINPTITPVSLDMEEGWEGCLSVPGLRGAVSRFSMIKYHGFD 121 Query: 123 QNGEPIDRSVEGFHARVVQHECDHLQGILYPMRIRDFRRFGFTEVLFPELDPSQDD 178 Q G+PIDR EGFHARVVQHECDHL G LYPMRI DF +FGFTEVLFP++DP+ DD Sbjct: 122 QYGKPIDRVAEGFHARVVQHECDHLIGKLYPMRINDFAKFGFTEVLFPDMDPNSDD 177 >ref|YP_003906552.1| peptide deformylase [Burkholderia sp. CCGE1003] gb|ADN57261.1| peptide deformylase [Burkholderia sp. CCGE1003] Length = 177 Score = 279 bits (713), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 131/176 (74%), Positives = 147/176 (83%) Query: 3 IREILKMGDPRLLRQAQPVTEFGTPELARLVDDMFQTMRAVNGAGLAAPQIGVDLQLVIF 62 IREILKMGDPRLLR A PV F TPEL L+ DMF+TM NGAGLAAPQIGV+LQ+VIF Sbjct: 2 IREILKMGDPRLLRIADPVDHFDTPELHELIKDMFETMHDANGAGLAAPQIGVNLQVVIF 61 Query: 63 GFGQNQRYPDAPPVPETVLINPVLTPLSEQEEEGWEGCLSVPGMRGVVPRWSRLRYQGVD 122 GFG N+RYPDAPPVPETVLINP +TP+S EEGWEGCLSVPG+RG V R+S ++Y G D Sbjct: 62 GFGSNERYPDAPPVPETVLINPTITPVSLDMEEGWEGCLSVPGLRGAVSRFSMIKYHGFD 121 Query: 123 QNGEPIDRSVEGFHARVVQHECDHLQGILYPMRIRDFRRFGFTEVLFPELDPSQDD 178 Q G+PIDR EGFHARVVQHECDHL G LYPMRI DF +FGFTEVLFP++DP+ DD Sbjct: 122 QYGKPIDRVAEGFHARVVQHECDHLIGKLYPMRITDFAKFGFTEVLFPDMDPNSDD 177 >ref|YP_004619152.1| peptide deformylase [Ramlibacter tataouinensis TTB310] gb|AEG93133.1| candidate peptide deformylase (Polypeptide deformylase) [Ramlibacter tataouinensis TTB310] Length = 196 Score = 279 bits (713), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 137/179 (76%), Positives = 151/179 (84%), Gaps = 1/179 (0%) Query: 1 MAIREILKMGDPRLLRQAQPVTEFGTPELARLVDDMFQTMRAVNGAGLAAPQIGVDLQLV 60 M +R ILKMGD RLLR AQPVT FGT E+ RLV DMF+TM AVNGAGLAAPQIGVDLQLV Sbjct: 18 MTVRTILKMGDARLLRVAQPVTAFGTDEIRRLVADMFETMAAVNGAGLAAPQIGVDLQLV 77 Query: 61 IFGF-GQNQRYPDAPPVPETVLINPVLTPLSEQEEEGWEGCLSVPGMRGVVPRWSRLRYQ 119 IFG N RYPDAPPVP TVL+NPV+TPL +++EEGWEGCLSVPG+RGVVPR R+RY+ Sbjct: 78 IFGTDAPNPRYPDAPPVPRTVLLNPVVTPLGDEKEEGWEGCLSVPGLRGVVPRHRRIRYR 137 Query: 120 GVDQNGEPIDRSVEGFHARVVQHECDHLQGILYPMRIRDFRRFGFTEVLFPELDPSQDD 178 G D +G PIDR EGFHARVVQHECDHL G LYPMR+RDF RFGFTEVLFP LD S+DD Sbjct: 138 GFDPDGRPIDREAEGFHARVVQHECDHLVGKLYPMRVRDFSRFGFTEVLFPGLDASEDD 196