BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0094.p (210 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775599.1| ribonuclease HII protein [Herbaspirillum ser... 422 e-116 ref|YP_004752000.1| ribonuclease HII [Collimonas fungivorans Ter... 320 1e-85 ref|YP_001353734.1| ribonuclease HII [Janthinobacterium sp. Mars... 308 3e-82 ref|YP_001099649.1| ribonuclease HII [Herminiimonas arsenicoxyda... 304 6e-81 ref|ZP_08275683.1| Ribonuclease HII [Oxalobacteraceae bacterium ... 296 1e-78 ref|ZP_04578279.1| ribonuclease HII [Oxalobacter formigenes OXCC... 284 7e-75 ref|ZP_04576089.1| ribonuclease HII [Oxalobacter formigenes HOxB... 280 1e-73 ref|YP_004039865.1| ribonuclease h [Methylovorus sp. MP688] >gi|... 255 3e-66 ref|YP_003051169.1| Ribonuclease H [Methylovorus glucosetrophus ... 253 1e-65 ref|YP_003048587.1| Ribonuclease H [Methylotenera mobilis JLW8] ... 252 2e-65 >ref|YP_003775599.1| ribonuclease HII protein [Herbaspirillum seropedicae SmR1] gb|ADJ63691.1| ribonuclease HII protein [Herbaspirillum seropedicae SmR1] Length = 210 Score = 422 bits (1084), Expect = e-116, Method: Compositional matrix adjust. Identities = 209/210 (99%), Positives = 210/210 (100%) Query: 1 MPKAAPQTLALFDDYTGEIICGVDEAGRGPLAGPVFAAAVILDPARPVKGLRDSKKLTEA 60 MPKAAPQTLALFDDYTGEIICGVDEAGRGPLAGPVFAAAVILDPARPVKGLRDSKKLTEA Sbjct: 1 MPKAAPQTLALFDDYTGEIICGVDEAGRGPLAGPVFAAAVILDPARPVKGLRDSKKLTEA 60 Query: 61 ARDSLALEIKASALAWAIASCNEQEIDELNILHASMLAMRRAVEALSTLPTLALIDGNRC 120 ARDSLALEIKASALAWA+ASCNEQEIDELNILHASMLAMRRAVEALSTLPTLALIDGNRC Sbjct: 61 ARDSLALEIKASALAWAVASCNEQEIDELNILHASMLAMRRAVEALSTLPTLALIDGNRC 120 Query: 121 PVMSIRSEAIVKGDDKVPAISAASILAKTARDAALMVLHDTYPHYGFDRHKGYPTPLHLE 180 PVMSIRSEAIVKGDDKVPAISAASILAKTARDAALMVLHDTYPHYGFDRHKGYPTPLHLE Sbjct: 121 PVMSIRSEAIVKGDDKVPAISAASILAKTARDAALMVLHDTYPHYGFDRHKGYPTPLHLE 180 Query: 181 MLRLHGVSPVHRRSYAPVKALLTAQPGLAA 210 MLRLHGVSPVHRRSYAPVKALLTAQPGLAA Sbjct: 181 MLRLHGVSPVHRRSYAPVKALLTAQPGLAA 210 >ref|YP_004752000.1| ribonuclease HII [Collimonas fungivorans Ter331] gb|AEK61177.1| Ribonuclease HII [Collimonas fungivorans Ter331] Length = 209 Score = 320 bits (820), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 161/203 (79%), Positives = 174/203 (85%), Gaps = 1/203 (0%) Query: 8 TLALFDDYTGEIICGVDEAGRGPLAGPVFAAAVILDPARPVKGLRDSKKLTEAARDSLAL 67 +LF Y GE ICGVDEAGRGPLAGPVFAAAVILDPARPV GLRDSKKLT R+ LA Sbjct: 7 NFSLFT-YDGETICGVDEAGRGPLAGPVFAAAVILDPARPVSGLRDSKKLTAERRELLAG 65 Query: 68 EIKASALAWAIASCNEQEIDELNILHASMLAMRRAVEALSTLPTLALIDGNRCPVMSIRS 127 +IKA+ALAWAIA C+E EID LNIL A+MLAMRRAVE LS LPTLALIDGNRCP +SIRS Sbjct: 66 QIKANALAWAIAECSEVEIDTLNILQATMLAMRRAVEGLSMLPTLALIDGNRCPQLSIRS 125 Query: 128 EAIVKGDDKVPAISAASILAKTARDAALMVLHDTYPHYGFDRHKGYPTPLHLEMLRLHGV 187 EAIVKGDDKV AISAASILAKTARDAAL +LH+ YPHY FD+HKGYPT LH+E LRLHGV Sbjct: 126 EAIVKGDDKVQAISAASILAKTARDAALQLLHEQYPHYAFDQHKGYPTALHMERLRLHGV 185 Query: 188 SPVHRRSYAPVKALLTAQPGLAA 210 SPVHR+SYAPV+ALL PG AA Sbjct: 186 SPVHRKSYAPVRALLAIVPGGAA 208 >ref|YP_001353734.1| ribonuclease HII [Janthinobacterium sp. Marseille] sp|A6SZN7.1|RNH2_JANMA RecName: Full=Ribonuclease HII; Short=RNase HII gb|ABR89222.1| ribonuclease HII [Janthinobacterium sp. Marseille] Length = 210 Score = 308 bits (790), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 152/202 (75%), Positives = 170/202 (84%), Gaps = 1/202 (0%) Query: 1 MPKAAPQTLALFDDYTGEIICGVDEAGRGPLAGPVFAAAVILDPARPVKGLRDSKKLTEA 60 M K P L+LF +IICGVDEAGRGPLAGPVFAAAVILDP RP+ GLRDSKKLTE Sbjct: 1 MKKEDP-NLSLFSFLDEDIICGVDEAGRGPLAGPVFAAAVILDPMRPIDGLRDSKKLTEV 59 Query: 61 ARDSLALEIKASALAWAIASCNEQEIDELNILHASMLAMRRAVEALSTLPTLALIDGNRC 120 RD+LA+EIK AL+W+IA C+E+EID LNIL A+MLAMRRA+E L +PTLALIDGNRC Sbjct: 60 KRDALAIEIKQYALSWSIAQCSEEEIDSLNILQATMLAMRRAIEGLHVVPTLALIDGNRC 119 Query: 121 PVMSIRSEAIVKGDDKVPAISAASILAKTARDAALMVLHDTYPHYGFDRHKGYPTPLHLE 180 PV S+RSEAI+KGDDKV AISAASILAKTARD AL +LH YPHY FD+HKGYPT LHLE Sbjct: 120 PVTSVRSEAIIKGDDKVQAISAASILAKTARDHALGLLHIQYPHYAFDQHKGYPTALHLE 179 Query: 181 MLRLHGVSPVHRRSYAPVKALL 202 LR HGVSPVHR+SYAPV+ALL Sbjct: 180 RLREHGVSPVHRKSYAPVRALL 201 >ref|YP_001099649.1| ribonuclease HII [Herminiimonas arsenicoxydans] sp|A4G4T5.1|RNH2_HERAR RecName: Full=Ribonuclease HII; Short=RNase HII emb|CAL61522.1| Ribonuclease HII (RNase HII) [Herminiimonas arsenicoxydans] Length = 211 Score = 304 bits (778), Expect = 6e-81, Method: Compositional matrix adjust. Identities = 148/195 (75%), Positives = 166/195 (85%) Query: 8 TLALFDDYTGEIICGVDEAGRGPLAGPVFAAAVILDPARPVKGLRDSKKLTEAARDSLAL 67 L+LF +IICGVDEAGRGPLAGPVFAAAVILDP RP+ GL DSKKL+E RD+LA+ Sbjct: 8 NLSLFSSLDEDIICGVDEAGRGPLAGPVFAAAVILDPMRPIDGLCDSKKLSEVRRDALAI 67 Query: 68 EIKASALAWAIASCNEQEIDELNILHASMLAMRRAVEALSTLPTLALIDGNRCPVMSIRS 127 +IKA AL+W+IA C+EQEID LNIL A+MLAMRRAVE L PTLALIDGNRCPVM +R+ Sbjct: 68 DIKAHALSWSIAQCSEQEIDSLNILQATMLAMRRAVEGLHIQPTLALIDGNRCPVMVVRA 127 Query: 128 EAIVKGDDKVPAISAASILAKTARDAALMVLHDTYPHYGFDRHKGYPTPLHLEMLRLHGV 187 EAI+KGDDKV AISAASILAKTARD AL +LH YPHY FD+HKGYPT LHLE LR HGV Sbjct: 128 EAIIKGDDKVQAISAASILAKTARDHALGLLHIAYPHYAFDQHKGYPTALHLERLREHGV 187 Query: 188 SPVHRRSYAPVKALL 202 SPVHR+SYAPV+ALL Sbjct: 188 SPVHRKSYAPVRALL 202 >ref|ZP_08275683.1| Ribonuclease HII [Oxalobacteraceae bacterium IMCC9480] gb|EGF30849.1| Ribonuclease HII [Oxalobacteraceae bacterium IMCC9480] Length = 188 Score = 296 bits (759), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 147/183 (80%), Positives = 161/183 (87%) Query: 20 ICGVDEAGRGPLAGPVFAAAVILDPARPVKGLRDSKKLTEAARDSLALEIKASALAWAIA 79 +CGVDEAGRGPLAGPVFAAAVILDPA P+ GLRDSKKLTEA RD+LA+EIKA ALAW+IA Sbjct: 1 MCGVDEAGRGPLAGPVFAAAVILDPAHPIAGLRDSKKLTEARRDALAIEIKAHALAWSIA 60 Query: 80 SCNEQEIDELNILHASMLAMRRAVEALSTLPTLALIDGNRCPVMSIRSEAIVKGDDKVPA 139 C+ EID +NIL AS+LAM+RAV+ L T PTLALIDGNRCPVM++RS AIV GDDKV A Sbjct: 61 ECSHHEIDAINILQASLLAMKRAVDTLPTTPTLALIDGNRCPVMTVRSIAIVGGDDKVDA 120 Query: 140 ISAASILAKTARDAALMVLHDTYPHYGFDRHKGYPTPLHLEMLRLHGVSPVHRRSYAPVK 199 ISAASILAKTARDAAL+VLH YP Y FDRHKGYPT LHLE LRLHGVSPVHRRSYAPV+ Sbjct: 121 ISAASILAKTARDAALVVLHADYPDYAFDRHKGYPTALHLERLRLHGVSPVHRRSYAPVR 180 Query: 200 ALL 202 LL Sbjct: 181 RLL 183 >ref|ZP_04578279.1| ribonuclease HII [Oxalobacter formigenes OXCC13] gb|EEO29252.1| ribonuclease HII [Oxalobacter formigenes OXCC13] Length = 219 Score = 284 bits (726), Expect = 7e-75, Method: Compositional matrix adjust. Identities = 140/200 (70%), Positives = 163/200 (81%), Gaps = 3/200 (1%) Query: 9 LALFD-DYTGEI--ICGVDEAGRGPLAGPVFAAAVILDPARPVKGLRDSKKLTEAARDSL 65 L LFD DY + CG DEAGRGP+AGPVFAAAVILDP P+ GL+DSKKL+E RD L Sbjct: 16 LPLFDEDYASGVTLFCGADEAGRGPIAGPVFAAAVILDPDHPIAGLKDSKKLSEHRRDEL 75 Query: 66 ALEIKASALAWAIASCNEQEIDELNILHASMLAMRRAVEALSTLPTLALIDGNRCPVMSI 125 ALEIK A AWAIA C+ +EIDELNILHASMLAM+RA+E+L+ P LALIDGNRCP ++I Sbjct: 76 ALEIKQYARAWAIAECSIEEIDELNILHASMLAMKRAIESLAIRPELALIDGNRCPKLAI 135 Query: 126 RSEAIVKGDDKVPAISAASILAKTARDAALMVLHDTYPHYGFDRHKGYPTPLHLEMLRLH 185 ++AIVKGDDKVPAISAASILAKTARDA ++ LH YP YGFDRHKGYPT HLE L +H Sbjct: 136 AAKAIVKGDDKVPAISAASILAKTARDAVMLDLHRQYPEYGFDRHKGYPTAYHLEQLSIH 195 Query: 186 GVSPVHRRSYAPVKALLTAQ 205 GVSPVHR++YAPV+ +L + Sbjct: 196 GVSPVHRKTYAPVRKILEPE 215 >ref|ZP_04576089.1| ribonuclease HII [Oxalobacter formigenes HOxBLS] gb|EEO27051.1| ribonuclease HII [Oxalobacter formigenes HOxBLS] Length = 218 Score = 280 bits (715), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 140/195 (71%), Positives = 159/195 (81%), Gaps = 4/195 (2%) Query: 12 FDDYT---GEIICGVDEAGRGPLAGPVFAAAVILDPARPVKGLRDSKKLTEAARDSLALE 68 FDD E+ICG DEAGRGP+AGPVFAAAVILDP RPV GLRDSKKL+E+ RD LALE Sbjct: 17 FDDGVLPETELICGADEAGRGPIAGPVFAAAVILDPDRPVNGLRDSKKLSESRRDELALE 76 Query: 69 IKASALAWAIASCNEQEIDELNILHASMLAMRRAVEALSTLPTLALIDGNRCPV-MSIRS 127 IK A AW+IA C+ EIDELNIL ASMLAM+RA+E LS LP LAL+DGNR P +S+R+ Sbjct: 77 IKKKAKAWSIAQCSVAEIDELNILWASMLAMKRAIETLSVLPELALVDGNRYPRDLSVRA 136 Query: 128 EAIVKGDDKVPAISAASILAKTARDAALMVLHDTYPHYGFDRHKGYPTPLHLEMLRLHGV 187 EAIVKGDD+VPAISAASILAKTARDA + LH YP YGFDRHKGYPT HL L+ +GV Sbjct: 137 EAIVKGDDRVPAISAASILAKTARDAVMRELHRQYPAYGFDRHKGYPTAFHLAQLKKYGV 196 Query: 188 SPVHRRSYAPVKALL 202 SPVHRR+YAPV+ +L Sbjct: 197 SPVHRRTYAPVRKIL 211 >ref|YP_004039865.1| ribonuclease h [Methylovorus sp. MP688] gb|ADQ84629.1| Ribonuclease H [Methylovorus sp. MP688] Length = 188 Score = 255 bits (651), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 129/184 (70%), Positives = 142/184 (77%) Query: 19 IICGVDEAGRGPLAGPVFAAAVILDPARPVKGLRDSKKLTEAARDSLALEIKASALAWAI 78 IICGVDEAGRGPLAG V+AAAVIL+PARP+ GL DSKKL+E RD+L LEIK ALAWAI Sbjct: 5 IICGVDEAGRGPLAGAVYAAAVILNPARPIPGLADSKKLSEKKRDALTLEIKQHALAWAI 64 Query: 79 ASCNEQEIDELNILHASMLAMRRAVEALSTLPTLALIDGNRCPVMSIRSEAIVKGDDKVP 138 A +EID +NIL ASMLAMRRAVE L P L+DG CP +S+ +EAIV GD KV Sbjct: 65 AHSTVEEIDSINILQASMLAMRRAVEQLGIQPHKLLVDGLHCPQVSMVAEAIVDGDSKVE 124 Query: 139 AISAASILAKTARDAALMVLHDTYPHYGFDRHKGYPTPLHLEMLRLHGVSPVHRRSYAPV 198 AISAASILAKTARD L L YPHYGF +HKGYPT H+ ML HGVSPVHRRSYAPV Sbjct: 125 AISAASILAKTARDKELYALDQQYPHYGFAKHKGYPTAFHMAMLIEHGVSPVHRRSYAPV 184 Query: 199 KALL 202 K LL Sbjct: 185 KKLL 188 >ref|YP_003051169.1| Ribonuclease H [Methylovorus glucosetrophus SIP3-4] gb|ACT50642.1| Ribonuclease H [Methylovorus glucosetrophus SIP3-4] Length = 188 Score = 253 bits (646), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 128/184 (69%), Positives = 142/184 (77%) Query: 19 IICGVDEAGRGPLAGPVFAAAVILDPARPVKGLRDSKKLTEAARDSLALEIKASALAWAI 78 IICGVDEAGRGPLAG V+AAAVIL+PARP+ GL DSKKL+E RD+L LEIK ALAWAI Sbjct: 5 IICGVDEAGRGPLAGAVYAAAVILNPARPIPGLADSKKLSEKKRDALTLEIKQHALAWAI 64 Query: 79 ASCNEQEIDELNILHASMLAMRRAVEALSTLPTLALIDGNRCPVMSIRSEAIVKGDDKVP 138 A +EID +NIL AS+LAMRRAVE L P L+DG CP +S+ +EAIV GD KV Sbjct: 65 AHSTVEEIDSINILQASLLAMRRAVEQLGIQPHKLLVDGLHCPEVSMVAEAIVDGDSKVE 124 Query: 139 AISAASILAKTARDAALMVLHDTYPHYGFDRHKGYPTPLHLEMLRLHGVSPVHRRSYAPV 198 AISAASILAKTARD L L YPHYGF +HKGYPT H+ ML HGVSPVHRRSYAPV Sbjct: 125 AISAASILAKTARDKELYALDQQYPHYGFAKHKGYPTAFHMAMLIEHGVSPVHRRSYAPV 184 Query: 199 KALL 202 K LL Sbjct: 185 KKLL 188 >ref|YP_003048587.1| Ribonuclease H [Methylotenera mobilis JLW8] gb|ACT48060.1| Ribonuclease H [Methylotenera mobilis JLW8] Length = 199 Score = 252 bits (644), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 125/195 (64%), Positives = 150/195 (76%), Gaps = 10/195 (5%) Query: 18 EIICGVDEAGRGPLAGPVFAAAVILDPARPVKGLRDSKKLTEAARDSLALEIKASALAWA 77 ++ICGVDEAGRGPLAG V+AAAVILDPA+P+ GL DSKKL+E RD+LALEIK ALAW Sbjct: 2 QLICGVDEAGRGPLAGAVYAAAVILDPAKPIHGLADSKKLSEKKRDALALEIKTHALAWG 61 Query: 78 IASCNEQEIDELNILHASMLAMRRAVEA----------LSTLPTLALIDGNRCPVMSIRS 127 +A +EID +NIL AS+LAM+RA+E+ L+ + L +DGN+CP +S+ Sbjct: 62 VAHSTVEEIDAINILQASLLAMQRAIESIQNSQAVQASLTNMQLLVQVDGNKCPKISLPC 121 Query: 128 EAIVKGDDKVPAISAASILAKTARDAALMVLHDTYPHYGFDRHKGYPTPLHLEMLRLHGV 187 EAIVKGD KV AISAASILAKTARDAAL L YP YGF +HKGYPT H+ +LR HGV Sbjct: 122 EAIVKGDSKVQAISAASILAKTARDAALYELDQQYPMYGFAQHKGYPTAAHMALLRQHGV 181 Query: 188 SPVHRRSYAPVKALL 202 SPVHRRSYAPV+AL+ Sbjct: 182 SPVHRRSYAPVRALI 196