BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0087.p (473 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775606.1| two component sensor histidine kinase [Herba... 959 0.0 ref|YP_004693865.1| integral membrane sensor signal transduction... 389 e-106 ref|YP_003847783.1| integral membrane sensor signal transduction... 385 e-104 ref|YP_003051027.1| histidine kinase [Methylovorus glucosetrophu... 347 3e-93 ref|YP_004039725.1| histidine kinase [Methylovorus sp. MP688] >g... 345 1e-92 gb|EGW60336.1| integral membrane sensor signal transduction hist... 337 4e-90 ref|ZP_08782179.1| integral membrane sensor signal transduction ... 336 6e-90 ref|YP_003048759.1| histidine kinase [Methylotenera mobilis JLW8... 331 1e-88 ref|YP_004513464.1| integral membrane sensor signal transduction... 322 1e-85 ref|YP_544824.1| periplasmic sensor signal transduction histidin... 301 2e-79 >ref|YP_003775606.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] gb|ADJ63698.1| two component sensor histidine kinase protein [Herbaspirillum seropedicae SmR1] Length = 473 Score = 959 bits (2480), Expect = 0.0, Method: Compositional matrix adjust. Identities = 472/473 (99%), Positives = 473/473 (100%) Query: 1 VGRLFWKFFFFIAIAQITATFGVGVLFWVENLERSNRNSEIDLSPPASFMIRSAAATLQF 60 +GRLFWKFFFFIAIAQITATFGVGVLFWVENLERSNRNSEIDLSPPASFMIRSAAATLQF Sbjct: 1 MGRLFWKFFFFIAIAQITATFGVGVLFWVENLERSNRNSEIDLSPPASFMIRSAAATLQF 60 Query: 61 GGTEALRSLINEGRPHRLQLYALDEDNKDLMGREVSPKLVEQAKHILATERERRVVERVK 120 GGTEALRSLINEGRPHRLQLYALDEDNKDLMGREVSPKLVEQAKHILATERERRVVERVK Sbjct: 61 GGTEALRSLINEGRPHRLQLYALDEDNKDLMGREVSPKLVEQAKHILATERERRVVERVK 120 Query: 121 APNGHSYLMFIPAPNDEFGPGGPPGGAREPHRIGERGPKSMFFPTMPIVVALLASLVFAL 180 APNGHSYLMFIPAPNDEFGPGGPPGGAREPHRIGERGPKSMFFPTMPIVVALLASLVFAL Sbjct: 121 APNGHSYLMFIPAPNDEFGPGGPPGGAREPHRIGERGPKSMFFPTMPIVVALLASLVFAL 180 Query: 181 LLAWYFSHPIGHLKNAFNQAANGNLDLELEPVMSARNDELADLGRDFDVMTAKLRTLMES 240 LLAWYFSHPIGHLKNAFNQAANGNLDLELEPVMSARNDELADLGRDFDVMTAKLRTLMES Sbjct: 181 LLAWYFSHPIGHLKNAFNQAANGNLDLELEPVMSARNDELADLGRDFDVMTAKLRTLMES 240 Query: 241 QRRLLHDVSHELRSPIARLQVAIGLARVQDKDKLDLTLERIERESVRMDKLVGELLTLSR 300 QRRLLHDVSHELRSPIARLQVAIGLARVQDKDKLDLTLERIERESVRMDKLVGELLTLSR Sbjct: 241 QRRLLHDVSHELRSPIARLQVAIGLARVQDKDKLDLTLERIERESVRMDKLVGELLTLSR 300 Query: 301 LEANVPGSMEEPIAIEAMLGDMINDASFEAEAIGKHVDDQLDCRVQVKGNPELLYRAIEN 360 LEANVPGSMEEPIAIEAMLGDMINDASFEAEAIGKHVDDQLDCRVQVKGNPELLYRAIEN Sbjct: 301 LEANVPGSMEEPIAIEAMLGDMINDASFEAEAIGKHVDDQLDCRVQVKGNPELLYRAIEN 360 Query: 361 VLRNAIKHTAPGTTVQIHTQLDEINKLLHLSILDRGPGVPEEEMNSIFELFFRSSRTKSN 420 VLRNAIKHTAPGTTVQIHTQLDEINKLLHLSILDRGPGVPEEEMNSIFELFFRSSRTKSN Sbjct: 361 VLRNAIKHTAPGTTVQIHTQLDEINKLLHLSILDRGPGVPEEEMNSIFELFFRSSRTKSN 420 Query: 421 SSGHGLGLSIARRIVEAHQGFIQAANRSNGGLRVDITLPFMADEPARGDTVES 473 SSGHGLGLSIARRIVEAHQGFIQAANRSNGGLRVDITLPFMADEPARGDTVES Sbjct: 421 SSGHGLGLSIARRIVEAHQGFIQAANRSNGGLRVDITLPFMADEPARGDTVES 473 >ref|YP_004693865.1| integral membrane sensor signal transduction histidine kinase [Nitrosomonas sp. Is79A3] gb|AEJ00466.1| integral membrane sensor signal transduction histidine kinase [Nitrosomonas sp. Is79A3] Length = 447 Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust. Identities = 218/463 (47%), Positives = 303/463 (65%), Gaps = 27/463 (5%) Query: 1 VGRLFWKFFFFIAIAQITATFGVGVLFWVENLERSNRNSEIDLSPPASFMIRSAAATLQF 60 +GRLFWKFF F +AQIT GVGV W+ RS ++ PP+ + +AA TL++ Sbjct: 1 MGRLFWKFFIFFWLAQITTFIGVGVAMWL----RSPGMEQLRAPPPSG--VAAAALTLRY 54 Query: 61 GGTEALRSLINE-GRPHRLQLYALDEDNKDLMGREVSPKLVEQAKHILATERERRVVERV 119 GG EALR L+ E R ++A+DE+N+D++GR VS ++ QA I ++ E+V Sbjct: 55 GGREALRGLLREQSREPAPPVFAVDENNRDILGRPVSEAMLAQASQIAGSQNNFGRAEKV 114 Query: 120 KAPNGHSYLMFIPAPNDEFGPGGPPGGARE----PHRIGERGPKSMFFPTMPIVVALLAS 175 +G++YL+F P+ G PG R PH +RG M P MP++ + S Sbjct: 115 TDADGYAYLLFAPSL-------GYPGLDRRMEPPPH---DRG---MLPPVMPLLAGGVVS 161 Query: 176 LVFALLLAWYFSHPIGHLKNAFNQAANGNLDLELEPVMSARNDELADLGRDFDVMTAKLR 235 L FA LAWYFS PI L+ AF +NG LD+ L PVM R DEL+DLGRDFD M +L+ Sbjct: 162 LFFAAWLAWYFSKPIRTLRAAFAAVSNGLLDVRLAPVMGNRRDELSDLGRDFDSMVQRLQ 221 Query: 236 TLMESQRRLLHDVSHELRSPIARLQVAIGLARVQDKDKLDLTLERIERESVRMDKLVGEL 295 LM+ QRR+LHDVSHELRSP+ARLQ AIGLAR Q ++ + ++ RIERE+VRMD LV EL Sbjct: 222 QLMDGQRRVLHDVSHELRSPLARLQAAIGLAR-QQPERTEDSMMRIEREAVRMDILVSEL 280 Query: 296 LTLSRLEANVPGSMEEPIAIEAMLGDMINDASFEAEAIGKHVDDQLDCRVQVKGNPELLY 355 LTLSRLEA++ G + E + + ++ +++ DA FEA A G V+ + V+GN ELL+ Sbjct: 281 LTLSRLEADMIGKLNEQVDLNELVSNVVEDARFEAAASGCRVEFEARSGAIVRGNAELLH 340 Query: 356 RAIENVLRNAIKHTAPGTTVQIHTQLDEINKLLHLSILDRGPGVPEEEMNSIFELFFRSS 415 RA+ENV+RNA+KH+ G + I +++ ++ + + +LD G GVPE ++ SIFE FFRS Sbjct: 341 RAVENVVRNAVKHSPSGGLIGIKIRINS-DQTIFIYVLDEGTGVPEADIQSIFEPFFRSD 399 Query: 416 RTKSNSSGHGLGLSIARRIVEAHQGFIQAANRSNGGLRVDITL 458 + K+ S GHGLGL+IA+R++ AHQG I A+NR +GGL + ITL Sbjct: 400 KKKT-SDGHGLGLAIAKRVITAHQGEIYASNRPSGGLCIIITL 441 >ref|YP_003847783.1| integral membrane sensor signal transduction histidine kinase [Gallionella capsiferriformans ES-2] gb|ADL56019.1| integral membrane sensor signal transduction histidine kinase [Gallionella capsiferriformans ES-2] Length = 447 Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust. Identities = 221/464 (47%), Positives = 303/464 (65%), Gaps = 27/464 (5%) Query: 1 VGRLFWKFFFFIAIAQITATFGVGVLFWVEN--LERSNRNSEIDLSPPASFMIRSAAATL 58 +GRLFWKFF F +AQ+T+ GVG W+ + +ER P S + +AA+TL Sbjct: 1 MGRLFWKFFIFFWLAQVTSVIGVGGAMWLRSPGMER--------FRAPQSSAVAAAASTL 52 Query: 59 QFGGTEALRSLINE-GRPHRLQLYALDEDNKDLMGREVSPKLVEQAKHILATERERRVVE 117 ++GG EALR L+ E R ++A+DE+N+D++GR VS ++ QA I ++ E Sbjct: 53 RYGGPEALRWLLREQSREPAPSVFAVDENNRDILGRPVSETMLVQANQIRGSQDNFGSAE 112 Query: 118 RVKAPNGHSYLMFIPAPNDEF--GPGGPPGGAREPHRIGERGPKSMFFPTMPIVVALLAS 175 +V A +GH+YL+F P+ G PP PH +RG M P MP++ + S Sbjct: 113 KVAAADGHTYLLFAQPPSYPRLDGRMEPP-----PH---DRG---MLPPVMPLLAGGVVS 161 Query: 176 LVFALLLAWYFSHPIGHLKNAFNQAANGNLDLELEPVMSARNDELADLGRDFDVMTAKLR 235 L FA LLAWYFS PI L+ AF +NG LD+ L PVM +R DEL+DLGRDFD M +L+ Sbjct: 162 LFFAALLAWYFSKPIRTLRAAFAAVSNGLLDVRLAPVMGSRRDELSDLGRDFDSMVQRLQ 221 Query: 236 TLMESQRRLLHDVSHELRSPIARLQVAIGLARVQDKDKLDLTLERIERESVRMDKLVGEL 295 LM+ QRR+LHDVSHELRSP+ARLQ AIGLAR Q ++++ ++ RIERE+VRMD LV EL Sbjct: 222 QLMDGQRRVLHDVSHELRSPLARLQAAIGLAR-QQPERIEDSMMRIEREAVRMDTLVSEL 280 Query: 296 LTLSRLEANVPGSMEEPIAIEAMLGDMINDASFEAEAIGKHVDDQLDCRVQVKGNPELLY 355 LTLSRLEA + G + E + + ++ D+ DA FEA A G V+ + R V+GN ELL+ Sbjct: 281 LTLSRLEAGMMGKLNEQVDLNELVSDVAEDARFEAAASGCRVEIEALSRAIVRGNAELLH 340 Query: 356 RAIENVLRNAIKHTAPGTTVQIHTQLDEINKLLHLSILDRGPGVPEEEMNSIFELFFRSS 415 RA+ENV+RNA+KH+ G V I Q + N+ + +++ D+G GVPE + +IFE FFRS+ Sbjct: 341 RAVENVVRNAVKHSPSGGLVAIKMQKNH-NQTICITVSDQGGGVPEADSYAIFEPFFRSA 399 Query: 416 RTKSNSSGHGLGLSIARRIVEAHQGFIQAANRSNGGLRVDITLP 459 +TK+ S GHGLGL+IA+R++ AHQG I A N GGL + I LP Sbjct: 400 QTKA-SDGHGLGLAIAQRVIIAHQGEIYARNHPGGGLCITINLP 442 >ref|YP_003051027.1| histidine kinase [Methylovorus glucosetrophus SIP3-4] gb|ACT50500.1| histidine kinase [Methylovorus glucosetrophus SIP3-4] Length = 484 Score = 347 bits (889), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 207/495 (41%), Positives = 304/495 (61%), Gaps = 46/495 (9%) Query: 1 VGRLFWKFFFFIAIAQITATFGVGVLFWVENLERSNRNSEIDLSPPASFMIRSAAATLQF 60 +GRL+WKFFFF AQ+T+ FGVG+ W N N S I+ SPPA ++ + +ATL+ Sbjct: 1 MGRLYWKFFFFFLFAQLTSVFGVGLAVWAHNRSLENSRSLIEASPPAMSVLAAVSATLEH 60 Query: 61 GGTEALRSLINEGRPHRL--QLYALDEDNKDLMGREVSPKLVEQAKHILATERERRVVER 118 GG A R ++ EG P R Q+Y ++E +DL+ R VSP+L++ A ++ + V Sbjct: 61 GGVGATRKML-EGWPQRRMPQIYVVNEAGEDLLQRRVSPELLQLA---ISQVDKDEAVRS 116 Query: 119 VKAPNGHSYLMFIPA--------PNDEFG-PGGPPGGAREPHRI-----GER-------- 156 + A +GH Y++F+PA PN+ G P GPP +P + GER Sbjct: 117 IHADDGHEYILFVPARSRGGQPPPNEGMGHPDGPPPDMHDPSDMHQPPPGERAEDGPPPN 176 Query: 157 -GPKSMF---FPTMPIVVALLASLVFALLLAWYFSHPIGHLKNAFNQAANGNLDLELEPV 212 G +S F FP +P+ ++ASLVFA LLAWYFS PI L+ AF A +G+L++ + Sbjct: 177 GGMRSRFWRVFPLVPLSAGVIASLVFAALLAWYFSKPIRSLRQAFITATDGDLEVRVAGS 236 Query: 213 MSARNDELADLGRDFDVMTAKLRTLMESQRRLLHDVSHELRSPIARLQVAIGLARVQDKD 272 M R DEL+DLGRDFD M ++L L++ Q RLLH VSHELRSP+AR+Q+AIGLAR Q + Sbjct: 237 MGHRRDELSDLGRDFDTMASRLGALLQGQSRLLHHVSHELRSPLARMQMAIGLAR-QSPE 295 Query: 273 KLDLTLERIERESVRMDKLVGELLTLSRLEANVPGSMEEPIAIEAMLGDMINDASFEAEA 332 K+ +LERIERES+RMDKLVGELL SRLE+ V +E + + +L + DA FE + Sbjct: 296 KVSSSLERIERESIRMDKLVGELLAFSRLESGVTNIHKERVDLSDLLFTLAEDAQFEGK- 354 Query: 333 IGKHVDDQLDCRV------QVKGNPELLYRAIENVLRNAIKHTAPGTTVQIHTQLDEINK 386 D +++ R+ ++ P+LL+RA+EN++RNA+K+ G+ V I D + Sbjct: 355 -----DRKMEVRLLPHDDFVLEAQPDLLHRALENIVRNALKYGPDGSDVDIDVSSDPATR 409 Query: 387 LLHLSILDRGPGVPEEEMNSIFELFFRSSRTKSNSSGHGLGLSIARRIVEAHQGFIQAAN 446 ++ + I D+G GV E+ +IF+ F+R++ + S GHG+GL++A+++VE H G I A N Sbjct: 410 MVLIRIRDQGMGVAPHELETIFQPFYRAN-SGLGSDGHGIGLALAKQVVEMHGGKIAARN 468 Query: 447 RSNGGLRVDITLPFM 461 S G V + LP++ Sbjct: 469 ISPVGFEVAVQLPYL 483 >ref|YP_004039725.1| histidine kinase [Methylovorus sp. MP688] gb|ADQ84489.1| histidine kinase [Methylovorus sp. MP688] Length = 484 Score = 345 bits (885), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 207/495 (41%), Positives = 303/495 (61%), Gaps = 46/495 (9%) Query: 1 VGRLFWKFFFFIAIAQITATFGVGVLFWVENLERSNRNSEIDLSPPASFMIRSAAATLQF 60 +GRL+WKFFFF AQ+T+ FGVG+ W N N S I+ SPPA ++ + +ATL+ Sbjct: 1 MGRLYWKFFFFFLFAQLTSVFGVGLAVWAHNRSLENSRSLIEASPPAMSVLAAVSATLEH 60 Query: 61 GGTEALRSLINEGRPHRL--QLYALDEDNKDLMGREVSPKLVEQAKHILATERERRVVER 118 GG A R ++ EG P R Q+Y ++E +DL+ R VSP+L++ A L + V Sbjct: 61 GGVGATRKML-EGWPQRRMPQIYVVNEAGEDLLQRRVSPELLQLAISQLDKDE---AVRS 116 Query: 119 VKAPNGHSYLMFIPA--------PNDEFG-PGGPPGGAREPHRI-----GER-------- 156 + A +GH Y++F+P+ PN+ G P GPP +P + GER Sbjct: 117 IHADDGHEYILFVPSRSRGGQPPPNEGMGHPDGPPPDMHDPSDMHQPPPGERAGDGPPPN 176 Query: 157 -GPKSMF---FPTMPIVVALLASLVFALLLAWYFSHPIGHLKNAFNQAANGNLDLELEPV 212 G +S F FP +P+ ++ASLVFA LLAWYFS PI L+ AF A +G+L++ + Sbjct: 177 GGMRSRFWRVFPLVPLSAGVIASLVFAALLAWYFSKPIRSLRQAFITATDGDLEVRVAGS 236 Query: 213 MSARNDELADLGRDFDVMTAKLRTLMESQRRLLHDVSHELRSPIARLQVAIGLARVQDKD 272 M R DEL+DLGRDFD M ++L L++ Q RLLH VSHELRSP+AR+Q+AIGLAR Q + Sbjct: 237 MGHRRDELSDLGRDFDTMASRLGALLQGQSRLLHHVSHELRSPLARMQMAIGLAR-QSPE 295 Query: 273 KLDLTLERIERESVRMDKLVGELLTLSRLEANVPGSMEEPIAIEAMLGDMINDASFEAEA 332 K+ +LERIERES+RMDKLVGELL SRLE+ V +E + + +L + DA FE + Sbjct: 296 KVSSSLERIERESIRMDKLVGELLAFSRLESGVTNIHKERVDLSDLLFTLAEDAQFEGK- 354 Query: 333 IGKHVDDQLDCRV------QVKGNPELLYRAIENVLRNAIKHTAPGTTVQIHTQLDEINK 386 D +++ R+ ++ P+LL+RA+EN++RNA+K+ G+ V I D + Sbjct: 355 -----DRKMEVRLLPHDDFVLEAQPDLLHRALENIVRNALKYGPDGSDVDIDVSSDPATR 409 Query: 387 LLHLSILDRGPGVPEEEMNSIFELFFRSSRTKSNSSGHGLGLSIARRIVEAHQGFIQAAN 446 ++ + I D+G GV E+ +IF+ F+R++ + S GHG+GL++A+++VE H G I A N Sbjct: 410 MVLIRIRDQGMGVAPHELETIFQPFYRAN-SGLGSDGHGIGLALAKQVVEMHGGKIAARN 468 Query: 447 RSNGGLRVDITLPFM 461 S G V + LP++ Sbjct: 469 ISPVGFEVAVQLPYL 483 >gb|EGW60336.1| integral membrane sensor signal transduction histidine kinase [Dechlorosoma suillum PS] Length = 474 Score = 337 bits (863), Expect = 4e-90, Method: Compositional matrix adjust. Identities = 200/480 (41%), Positives = 282/480 (58%), Gaps = 31/480 (6%) Query: 1 VGRLFWKFFFFIAIAQITATFGVGVLFWVENLERSNRNSEIDLSPPASFMIRSAAATLQF 60 + RLFWKFF + +TA VG L W+ + P +FM+ AA+ LQ Sbjct: 1 MSRLFWKFFVTFWLTLLTANIIVGGLIWLHRSAEFEQQQGSRPGQPPTFMLGVAASLLQH 60 Query: 61 GGTEALRSLINEGR-PHRLQLYALDEDNKDLMGREVSPKLVEQAKHIL--ATERERRVVE 117 G E+L+ L+ + + H +YA+D DL+GR V +++A+ + R+ + Sbjct: 61 DGEESLKQLLRDWQQSHPEPIYAVDAQGMDLLGRPVPEGALDKARQGIRDGQPGPWRLAQ 120 Query: 118 RVKAPNGHSYLMFIPA----PNDEFGPGGPPGGAREPHRIGER----------GPKSMFF 163 R + L+F+P P D FGPGG G E H +GE GPK Sbjct: 121 RSMS---SPILLFMPGGPFRPEDLFGPGG---GPPEAHLLGEPGGPPPPHRNMGPKPPL- 173 Query: 164 PTMPIVVALLASLVFALLLAWYFSHPIGHLKNAFNQAANGNLDLELEPVMSARNDELADL 223 P + I L+ASL F+ LLAW PI L+ F A G L+ L + R DE+ +L Sbjct: 174 PWLLIATGLVASLAFSALLAWTIVGPIRRLRQGFRAVAAGRLETRLGQEFAKRKDEIGEL 233 Query: 224 GRDFDVMTAKLRTLMESQRRLLHDVSHELRSPIARLQVAIGLARVQDKDKLDLTLERIER 283 G++FD M +L LM +QRRL HDVSHELRSP+ARLQ A+GL QD ++ LERIER Sbjct: 234 GQEFDAMAQQLEALMATQRRLFHDVSHELRSPLARLQAAVGLVH-QDPSRIAGALERIER 292 Query: 284 ESVRMDKLVGELLTLSRLEANVPGSMEEPIAIEAMLGDMINDASFEAEAIGKHVDDQLDC 343 E+ R+D++V ELLTL+RL++ G +E+ I + A+L +++DA+FEAEA G+HVD Q C Sbjct: 293 ETQRLDEMVDELLTLARLDSGTSGPLEDEIDLPALLHSIVDDAAFEAEAQGRHVDFQDRC 352 Query: 344 ---RVQVKGNPELLYRAIENVLRNAIKHTAPGTTVQIHTQLDEINKLLHLSILDRGPGVP 400 ++G PELL RA+ENV+RN IK+TAPGT V + + D L + + D GPGVP Sbjct: 353 GEAPAFIRGRPELLGRALENVIRNGIKYTAPGTRVTVEAERD--GDSLRVRVADAGPGVP 410 Query: 401 EEEMNSIFELFFRSSRTKSNSSGHGLGLSIARRIVEAHQGFIQAANRSNGGLRVDITLPF 460 E E+++IF FFR + + G+GLGL+IARR ++AH G I+A+NR +GGL+V+I LP Sbjct: 411 EAELDAIFVPFFRGA-DREQQRGYGLGLAIARRAIQAHGGSIRASNRPDGGLQVEIHLPL 469 >ref|ZP_08782179.1| integral membrane sensor signal transduction histidine kinase [Methylobacter tundripaludum SV96] gb|EGW20451.1| integral membrane sensor signal transduction histidine kinase [Methylobacter tundripaludum SV96] Length = 475 Score = 336 bits (861), Expect = 6e-90, Method: Compositional matrix adjust. Identities = 198/485 (40%), Positives = 278/485 (57%), Gaps = 37/485 (7%) Query: 1 VGRLFWKFFFFIAIAQITATFGVGVLFWVENLERSNRNS---EIDLSPPASFMIRSAAAT 57 +GRLFWKFF +A + A GVG W+ + + ID+ ASF + A Sbjct: 1 MGRLFWKFFLTFWLALLVAGIGVGTAVWLRHNAWQGTETVKHTIDVRHAASF-VAVADNA 59 Query: 58 LQFGGTEALRSLINEGRPHRLQ-LYALDEDNKDLMGREVSPKLVEQAKHILATERERRVV 116 ++ GG LR+ + R +YA+D+ +++L+ R V P++++QA+ + + Sbjct: 60 IRHGGVAGLRNFLEAMRDAPFPPVYAVDDQDRELLQRSVVPEVLQQARTLFLQAAYPEAI 119 Query: 117 ERVKAPNGHSYLMFIPAPNDEFGPGGPPGGAREPHRIGERGPKSMFFPTMP--------- 167 RV +GH YL+F+P P F A P R+ + F P P Sbjct: 120 RRVSTEDGHRYLLFVPLPEHGF--------ADRPPRMPGEEADAGFAPPPPEGHFSRPPR 171 Query: 168 -----------IVVALLASLVFALLLAWYFSHPIGHLKNAFNQAANGNLDLELEPVMSAR 216 I+ ASL+F+ LAWYF+ PI L+NAF A G+LD + M R Sbjct: 172 PPRVPPSPLLPILAGTFASLIFSAALAWYFAKPIRSLRNAFTALAQGDLDTRVGSSMGKR 231 Query: 217 NDELADLGRDFDVMTAKLRTLMESQRRLLHDVSHELRSPIARLQVAIGLARVQDKDKLDL 276 DEL+DLG++FD M ++ +L+ +Q+RLLHDVSHELRSP+AR+Q AIGLA+ Q +K+ Sbjct: 232 RDELSDLGQNFDHMAGQIHSLVHAQQRLLHDVSHELRSPLARIQAAIGLAQ-QQPEKIMA 290 Query: 277 TLERIERESVRMDKLVGELLTLSRLEANVPGSMEEPIAIEAMLGDMINDASFEAEAIGKH 336 +ERIERES R+ LVGELL LSRLEA V GS I +L D++ +A FEAE G Sbjct: 291 MMERIERESQRISDLVGELLVLSRLEAGVSGSESHDFDIGGLLDDIVENARFEAEQYGVV 350 Query: 337 VDDQLDCRVQVKGNPELLYRAIENVLRNAIKHTAPGTTVQIHTQLDEINKLLHLSILDRG 396 + VKG ELL+RAIENVLRNA++H G V + + D + L +++ D+G Sbjct: 351 IRYDGIEETVVKGRSELLHRAIENVLRNALQHCKKGGEVAVIVRFDTGKRRLQVAVYDQG 410 Query: 397 PGVPEEEMNSIFELFFRSS-RTKSNSSGHGLGLSIARRIVEAHQGFIQAANRSNGGLRVD 455 PGV E ++ +IFE FFRS R K++S GLGL+IA R +EAH G IQA+NR GGLR++ Sbjct: 411 PGVAESDLAAIFEPFFRSGDRGKADSI--GLGLAIAYRAIEAHAGRIQASNRPQGGLRIE 468 Query: 456 ITLPF 460 I +PF Sbjct: 469 INIPF 473 >ref|YP_003048759.1| histidine kinase [Methylotenera mobilis JLW8] gb|ACT48232.1| histidine kinase [Methylotenera mobilis JLW8] Length = 467 Score = 331 bits (849), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 182/469 (38%), Positives = 286/469 (60%), Gaps = 22/469 (4%) Query: 10 FFIAIAQITATFGVGVLFWVENLERSNRNSEIDLSPPASFMIRSAAATLQFGGTEALRSL 69 F+ +AQ+TA GV V W+++ + +++ +++SPPA ++ ++A+TLQFGG EALR L Sbjct: 1 MFLLVAQLTAVTGVSVAIWLQHRHEALQSTGVEMSPPARSLVEASASTLQFGGVEALRHL 60 Query: 70 INEGRPHRL-QLYALDEDNKDLMGREVSPKLVEQAKHILATERERRVVERVKAPNGHSYL 128 + + + QL A+D ++L+ R + + A ++ ++ +R V+++K NG S+L Sbjct: 61 LQSWQKRPMPQLLAIDNKGQELLQRSYTKASFDTAIALVREDQRQRHVKQIKLNNGQSFL 120 Query: 129 MFIP----------APND-EFGPGGPPGGAREP-------HRIGERGPKSMFFPTMPIVV 170 +F+P AP + P AR P +R P + FP MP++ Sbjct: 121 LFVPDNGRPSVVAPAPTERSHNHRSPVSDARMPAADNMEQYRSAPHRPP-VRFPLMPLLG 179 Query: 171 ALLASLVFALLLAWYFSHPIGHLKNAFNQAANGNLDLELEPVMSARNDELADLGRDFDVM 230 ++ S +FA LLAWYFS PI L++AF QA++G LD+ + M R DEL+DLG DFD M Sbjct: 180 GVVVSFLFAALLAWYFSKPINILRSAFEQASHGKLDVRVANAMGGRRDELSDLGHDFDAM 239 Query: 231 TAKLRTLMESQRRLLHDVSHELRSPIARLQVAIGLARVQDKDKLDLTLERIERESVRMDK 290 ++L +L++SQ +LLH VSHELRSP+AR+Q+A+GL Q K+ ++RI E+ RMD Sbjct: 240 ASRLESLLQSQTKLLHHVSHELRSPLARIQMALGLV-TQAPHKITEFIDRITLEANRMDG 298 Query: 291 LVGELLTLSRLEANVPGSMEEPIAIEAMLGDMINDASFEAEAIGKHVDDQLDCRVQVKGN 350 L+GELLTLSRLE+ +E +A+ +L ++ DA FEA + + L ++G Sbjct: 299 LIGELLTLSRLESGAVQIKKETLALNQLLHSIVEDAQFEAASKDIKLGMNLAREYSLQGQ 358 Query: 351 PELLYRAIENVLRNAIKHTAPGTTVQIHTQLDEINKLLHLSILDRGPGVPEEEMNSIFEL 410 P+LLYRAIENV+RNAIK++ + + I+ D + LH+++ D G GV E+ IF+ Sbjct: 359 PDLLYRAIENVVRNAIKYSPEHSAIDINCHQDATDDCLHITVTDEGAGVDALELEDIFKP 418 Query: 411 FFRSSRTKSNSSGHGLGLSIARRIVEAHQGFIQAANRSNGGLRVDITLP 459 F R + S + GHG+GL+I ++++EAH G ++A N S G R++I LP Sbjct: 419 FVRGV-SGSQTVGHGVGLAITKQVIEAHGGHVRADNLSPNGFRIEIALP 466 >ref|YP_004513464.1| integral membrane sensor signal transduction histidine kinase [Methylomonas methanica MC09] gb|AEG00965.1| integral membrane sensor signal transduction histidine kinase [Methylomonas methanica MC09] Length = 468 Score = 322 bits (824), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 197/468 (42%), Positives = 269/468 (57%), Gaps = 11/468 (2%) Query: 1 VGRLFWKFFFFIAIAQITATFGVGVLFWV--ENLERS-NRNSEIDLSPPASFMIRSAAAT 57 +GRLFWKFFF +A + A GVG W + LE+ + +DL A + +AA Sbjct: 1 MGRLFWKFFFASWLAMLAAGAGVGTAVWWSHQTLEQERHAQKTLDLDHHAGLFVGAAADV 60 Query: 58 LQFGGTEALRSLINEGRPHRL-QLYALDEDNKDLMGREVSPKLVEQAKHILATERERRVV 116 LQFGG +AL + + R H Q+YA+D D++ R V P+L+ QA+ + + + Sbjct: 61 LQFGGEQALSQYLQQARHHPAPQVYAVDARGTDILQRAVEPQLLNQARDWYLQQDDGDEI 120 Query: 117 ERVKAPNGHSYLMFIPAPNDEFGPGGPPGGAREPHRIGERGPK--SMFFPTMPIVVALLA 174 +V+ G +L+F P G P PH PK S++ +P++ A Sbjct: 121 RKVRTVEGREFLLFAVIPEFTRGRHSGPLPPIPPHWRDAPPPKRPSLW---LPVISGTFA 177 Query: 175 SLVFALLLAWYFSHPIGHLKNAFNQAANGNLDLELEPVMSARNDELADLGRDFDVMTAKL 234 SL + LAWYF+ PI L+ AF AA G LD ++ M R+DEL DLG+DFD M A+L Sbjct: 178 SLCLSAALAWYFAKPIRSLRKAFADAAVGRLDTQVAEAMGNRHDELTDLGQDFDHMAAQL 237 Query: 235 RTLMESQRRLLHDVSHELRSPIARLQVAIGLARVQDKDKLDLTLERIERESVRMDKLVGE 294 +L+ +Q+RLLHDVSHELRSP+AR+Q AIGLA+ Q K+ TLERIERES R+ LVGE Sbjct: 238 DSLISAQQRLLHDVSHELRSPLARMQAAIGLAQ-QQPHKIPETLERIERESQRISDLVGE 296 Query: 295 LLTLSRLEANVPGSMEEPIAIEAMLGDMINDASFEAEAIGKHVDDQLDCRVQVKGNPELL 354 LL LSRLEA V + +L D++ D FEA + + V V+ + ELL Sbjct: 297 LLVLSRLEAGVSDGNMADTDLGGLLADIVEDVRFEAAQKQVEITYRGFDEVIVETSGELL 356 Query: 355 YRAIENVLRNAIKHTAPGTTVQIHTQLDEINKLLHLSILDRGPGVPEEEMNSIFELFFRS 414 +RA+ENVLRNA++H G V ++ D L + I D+G GVPE ++ +IF+ FF+S Sbjct: 357 HRAVENVLRNAVQHCKCGGEVTVNAGFDPAEGRLRIVIEDQGIGVPEADLQAIFQPFFKS 416 Query: 415 SRTKSNSSGHGLGLSIARRIVEAHQGFIQAANRSNGGLRVDITLPFMA 462 K S GLGLSIA R VEA G I+A NRS GGL V+I L + Sbjct: 417 PNQKKPDS-VGLGLSIAYRAVEALGGNIRARNRSQGGLAVEIELRLLG 463 >ref|YP_544824.1| periplasmic sensor signal transduction histidine kinase [Methylobacillus flagellatus KT] gb|ABE48983.1| periplasmic sensor signal transduction histidine kinase [Methylobacillus flagellatus KT] Length = 445 Score = 301 bits (770), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 175/465 (37%), Positives = 271/465 (58%), Gaps = 26/465 (5%) Query: 1 VGRLFWKFFFFIAIAQITATFGVGVLFWVENLERSNRNSEIDLSPP-ASFMIRSAAATLQ 59 +G+LFWK F ++ + GVG ++ E++ E L A F++ A LQ Sbjct: 1 MGKLFWKIFLGFSLTLLVTVAGVGGAIYLN--EKTASGEEGFLRDRRADFVVGVTANALQ 58 Query: 60 FGGTEALRSLINEGRPHRL-QLYALDEDNKDLMGREVSPKLVEQAKHILATERERRVVER 118 +GG ++L+ H++ + +++ ++D++ R V + ++QA H L V R Sbjct: 59 YGGEAGAKALLEHWPGHKVPTVLVINQHHQDILNRTVRSETLQQAIHALDQSPPIPSVRR 118 Query: 119 VKAPNGHSYLMFIPAPNDEFGPGGPPGGAREPHRIGERGPKSMFFPTMPIVVALLASLVF 178 V+A NG+ Y++FIPA + GPP + + I +ALLASL+F Sbjct: 119 VQASNGNQYILFIPAEGAD--SAGPP----------------RYNLQLQIFIALLASLLF 160 Query: 179 ALLLAWYFSHPIGHLKNAFNQAANGNLDLELEPVMSARNDELADLGRDFDVMTAKLRTLM 238 + A Y S PI L+ A + A G+L + P + RNDEL +LG DFD M +L+TL+ Sbjct: 161 SAGFALYLSRPIKLLRRASRRLAEGDLSTRVSPELGNRNDELIELGADFDYMATRLQTLL 220 Query: 239 ESQRRLLHDVSHELRSPIARLQVAIGLARVQDKDKLDLTLERIERESVRMDKLVGELLTL 298 ++QR LLHDVSHELRSP+AR+++A+GLA+ Q DKL L RIERE+ R+D+L+G++LTL Sbjct: 221 DAQRLLLHDVSHELRSPVARMRLAVGLAQ-QQPDKLASALSRIERETERLDELLGQMLTL 279 Query: 299 SRLEANVPGSMEEPIAIEAMLGDMINDASFEAEAIGKHVDDQLDCRVQVKGNPELLYRAI 358 SRLE+ + E + + +L +I DA+FEA+A+G + V ++G+ ELL RA Sbjct: 280 SRLESGISSENSETLNLNDLLATIIQDANFEAQAVGSSITFHAADEVILQGHYELLRRAF 339 Query: 359 ENVLRNAIKHTAPGTTVQIHTQLDEINKLLHLSILDRGPGVPEEEMNSIFELFFRSSRT- 417 EN++RNA+K+ G V + + + + + + D GPG+PE E+ S+F+ F+R T Sbjct: 340 ENIIRNALKYNQAGQAVTV--SILKTQSAVIVEVRDHGPGLPETEIESVFQPFYRVRGTE 397 Query: 418 KSNSSGHGLGLSIARRIVEAHQGFIQAANRSNGGLRVDITLPFMA 462 K+ G+GLGL+IA+R +E HQG I +N +GGL V T P A Sbjct: 398 KAGHVGYGLGLAIAKRAIEHHQGNISLSNCDDGGLCVRCTFPLTA 442