BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0086.p (229 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775607.1| two component response regulator protein [He... 469 e-130 ref|YP_004039724.1| winged helix family two component transcript... 324 6e-87 ref|YP_003051026.1| winged helix family two component transcript... 324 6e-87 ref|YP_283930.1| response regulator receiver:transcriptional reg... 313 2e-83 ref|YP_003847784.1| two component transcriptional regulator, win... 313 2e-83 ref|YP_003048758.1| winged helix family two component transcript... 303 1e-80 ref|YP_004693864.1| winged helix family two component transcript... 301 6e-80 ref|YP_003674624.1| winged helix family two component transcript... 301 6e-80 gb|EGW60337.1| two component transcriptional regulator, winged h... 300 1e-79 ref|YP_004848753.1| two component transcriptional regulator [Pse... 300 1e-79 >ref|YP_003775607.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ63699.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 229 Score = 469 bits (1207), Expect = e-130, Method: Compositional matrix adjust. Identities = 229/229 (100%), Positives = 229/229 (100%) Query: 1 MSKVLLIDDDVELVDMLKEYLEQEKFEVNVAYDGEAGAAEALTGQYAIAVLDVMMPRLNG 60 MSKVLLIDDDVELVDMLKEYLEQEKFEVNVAYDGEAGAAEALTGQYAIAVLDVMMPRLNG Sbjct: 1 MSKVLLIDDDVELVDMLKEYLEQEKFEVNVAYDGEAGAAEALTGQYAIAVLDVMMPRLNG 60 Query: 61 VDTLRRIRAKSSMPVVMLTAKGDDTDRIIGLELGADDYVPKPCSPREIAARIRAILRRAS 120 VDTLRRIRAKSSMPVVMLTAKGDDTDRIIGLELGADDYVPKPCSPREIAARIRAILRRAS Sbjct: 61 VDTLRRIRAKSSMPVVMLTAKGDDTDRIIGLELGADDYVPKPCSPREIAARIRAILRRAS 120 Query: 121 AENNEQSPYSPLAVGALSMWPEQRRATWNGKPLELTSSEFNLLEVLARNAGKPVSKQHLS 180 AENNEQSPYSPLAVGALSMWPEQRRATWNGKPLELTSSEFNLLEVLARNAGKPVSKQHLS Sbjct: 121 AENNEQSPYSPLAVGALSMWPEQRRATWNGKPLELTSSEFNLLEVLARNAGKPVSKQHLS 180 Query: 181 EQGLGRPLARFDRNIDVHLSSIRQKIAALGSDKSCIQTVYRLGYQFIKE 229 EQGLGRPLARFDRNIDVHLSSIRQKIAALGSDKSCIQTVYRLGYQFIKE Sbjct: 181 EQGLGRPLARFDRNIDVHLSSIRQKIAALGSDKSCIQTVYRLGYQFIKE 229 >ref|YP_004039724.1| winged helix family two component transcriptional regulator [Methylovorus sp. MP688] gb|ADQ84488.1| two component transcriptional regulator, winged helix family [Methylovorus sp. MP688] Length = 234 Score = 324 bits (831), Expect = 6e-87, Method: Compositional matrix adjust. Identities = 157/229 (68%), Positives = 187/229 (81%), Gaps = 2/229 (0%) Query: 1 MSKVLLIDDDVELVDMLKEYLEQEKFEVNVAYDGEAGAAEALTGQYAIAVLDVMMPRLNG 60 M+KVLLIDDDVELV MLKEYLEQE F+ VAYDGE+GA +AL Y + +LDVMMP++NG Sbjct: 8 MNKVLLIDDDVELVGMLKEYLEQEGFDPTVAYDGESGAEQALRDTYDLILLDVMMPKMNG 67 Query: 61 VDTLRRIRAKSSMPVVMLTAKGDDTDRIIGLELGADDYVPKPCSPREIAARIRAILRRAS 120 +D LR IRA+ + PV+MLTAKG+D DRI+GLELGADDYVPKPC+PREI AR+RAILRR Sbjct: 68 IDALRAIRAEKNTPVLMLTAKGEDADRIVGLELGADDYVPKPCTPREIVARVRAILRRTQ 127 Query: 121 AENNEQSPYSPLAVGALSMWPEQRRATWNGKPLELTSSEFNLLEVLARNAGKPVSKQHLS 180 +N Q + VGAL++WPEQRRA W+G LELTS+EFNLLEVL R+AG+ VSK LS Sbjct: 128 PSDNAQP--VQITVGALTLWPEQRRAEWSGNVLELTSTEFNLLEVLVRHAGRVVSKSDLS 185 Query: 181 EQGLGRPLARFDRNIDVHLSSIRQKIAALGSDKSCIQTVYRLGYQFIKE 229 QGLGRPLARFDR+IDVHLSSIRQKI A + + IQTVYR+GYQ ++E Sbjct: 186 LQGLGRPLARFDRSIDVHLSSIRQKIDAYANGRHYIQTVYRMGYQLVRE 234 >ref|YP_003051026.1| winged helix family two component transcriptional regulator [Methylovorus glucosetrophus SIP3-4] gb|ACT50499.1| two component transcriptional regulator, winged helix family [Methylovorus glucosetrophus SIP3-4] Length = 227 Score = 324 bits (831), Expect = 6e-87, Method: Compositional matrix adjust. Identities = 157/229 (68%), Positives = 187/229 (81%), Gaps = 2/229 (0%) Query: 1 MSKVLLIDDDVELVDMLKEYLEQEKFEVNVAYDGEAGAAEALTGQYAIAVLDVMMPRLNG 60 M+KVLLIDDDVELV MLKEYLEQE F+ VAYDGE+GA +AL Y + +LDVMMP++NG Sbjct: 1 MNKVLLIDDDVELVGMLKEYLEQEGFDPTVAYDGESGAEQALRDTYDLILLDVMMPKMNG 60 Query: 61 VDTLRRIRAKSSMPVVMLTAKGDDTDRIIGLELGADDYVPKPCSPREIAARIRAILRRAS 120 +D LR IRA+ + PV+MLTAKG+D DRI+GLELGADDYVPKPC+PREI AR+RAILRR Sbjct: 61 IDALRAIRAEKNTPVLMLTAKGEDADRIVGLELGADDYVPKPCTPREIVARVRAILRRTQ 120 Query: 121 AENNEQSPYSPLAVGALSMWPEQRRATWNGKPLELTSSEFNLLEVLARNAGKPVSKQHLS 180 +N Q + VGAL++WPEQRRA W+G LELTS+EFNLLEVL R+AG+ VSK LS Sbjct: 121 PSDNAQP--VQITVGALTLWPEQRRAEWSGNVLELTSTEFNLLEVLVRHAGRVVSKSDLS 178 Query: 181 EQGLGRPLARFDRNIDVHLSSIRQKIAALGSDKSCIQTVYRLGYQFIKE 229 QGLGRPLARFDR+IDVHLSSIRQKI A + + IQTVYR+GYQ ++E Sbjct: 179 LQGLGRPLARFDRSIDVHLSSIRQKIDAYANGRHYIQTVYRMGYQLVRE 227 >ref|YP_283930.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Dechloromonas aromatica RCB] gb|AAZ45460.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Dechloromonas aromatica RCB] Length = 226 Score = 313 bits (801), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 147/229 (64%), Positives = 181/229 (79%), Gaps = 3/229 (1%) Query: 1 MSKVLLIDDDVELVDMLKEYLEQEKFEVNVAYDGEAGAAEALTGQYAIAVLDVMMPRLNG 60 M +LL+DDDVEL ML++YL Q+ FE +DGE+G EAL+G YAI LDVMMP ++G Sbjct: 1 MPHILLVDDDVELSGMLRDYLNQDGFEATAVHDGESGVVEALSGHYAIVALDVMMPGISG 60 Query: 61 VDTLRRIRAKSSMPVVMLTAKGDDTDRIIGLELGADDYVPKPCSPREIAARIRAILRRAS 120 ++ LRRIRA S++PV+MLTAKGDD DRI+GLELGADDYVPKPC PRE+AAR+RAILRR + Sbjct: 61 IEVLRRIRAVSNVPVLMLTAKGDDMDRIVGLELGADDYVPKPCQPRELAARLRAILRRTT 120 Query: 121 AENNEQSPYSPLAVGALSMWPEQRRATWNGKPLELTSSEFNLLEVLARNAGKPVSKQHLS 180 ++ P+ G L+++PEQRR W G P+++TS+EFNL+EVLARNAG+PVSK L Sbjct: 121 L---VEAASGPIVAGPLTVYPEQRRVEWGGAPVDMTSTEFNLVEVLARNAGRPVSKGLLC 177 Query: 181 EQGLGRPLARFDRNIDVHLSSIRQKIAALGSDKSCIQTVYRLGYQFIKE 229 EQ LGRPLARFDR+IDVHLSSIR K+ L +SCIQTVYR GYQ IKE Sbjct: 178 EQALGRPLARFDRSIDVHLSSIRHKLGNLPDGRSCIQTVYRQGYQLIKE 226 >ref|YP_003847784.1| two component transcriptional regulator, winged helix family [Gallionella capsiferriformans ES-2] gb|ADL56020.1| two component transcriptional regulator, winged helix family [Gallionella capsiferriformans ES-2] Length = 234 Score = 313 bits (801), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 154/228 (67%), Positives = 183/228 (80%), Gaps = 1/228 (0%) Query: 2 SKVLLIDDDVELVDMLKEYLEQEKFEVNVAYDGEAGAAEALTGQYAIAVLDVMMPRLNGV 61 +KVLL+DDDVEL ML+ YLE+E FEV +DGE+G EAL G + IAVLDVMMP +G+ Sbjct: 8 TKVLLVDDDVELAGMLRVYLEREGFEVKAVHDGESGITEALQGHHDIAVLDVMMPGKSGI 67 Query: 62 DTLRRIRAKSSMPVVMLTAKGDDTDRIIGLELGADDYVPKPCSPREIAARIRAILRRASA 121 D L +IRA+ +MPV+MLTA+GDD DRIIGLELGADDYVPKPC+PRE+ ARIRAILRR+S Sbjct: 68 DVLVQIRAQGAMPVLMLTARGDDADRIIGLELGADDYVPKPCTPRELTARIRAILRRSSG 127 Query: 122 ENNEQSPYSPLAVGALSMWPEQRRATWNGKPLELTSSEFNLLEVLARNAGKPVSKQHLSE 181 + S + +A G LS+WPEQRRA W GKPLELTS+EFNLLEVLARNAG+ VSK LSE Sbjct: 128 AESALSSSTVIA-GVLSIWPEQRRAEWAGKPLELTSTEFNLLEVLARNAGQVVSKSELSE 186 Query: 182 QGLGRPLARFDRNIDVHLSSIRQKIAALGSDKSCIQTVYRLGYQFIKE 229 Q LGRPLARFDR+IDVHLSSIR+K+ L +S I V+ GYQFI+E Sbjct: 187 QALGRPLARFDRSIDVHLSSIRRKLEPLPDGRSRILAVFNKGYQFIRE 234 >ref|YP_003048758.1| winged helix family two component transcriptional regulator [Methylotenera mobilis JLW8] gb|ACT48231.1| two component transcriptional regulator, winged helix family [Methylotenera mobilis JLW8] Length = 235 Score = 303 bits (777), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 142/228 (62%), Positives = 176/228 (77%) Query: 1 MSKVLLIDDDVELVDMLKEYLEQEKFEVNVAYDGEAGAAEALTGQYAIAVLDVMMPRLNG 60 M K+LLIDDD+EL MLKE+L E F+V A DG +GA AL+ Q+ +AVLDVMMP++NG Sbjct: 1 MHKILLIDDDIELTAMLKEFLCTEGFDVTTASDGVSGAQLALSNQFDLAVLDVMMPKMNG 60 Query: 61 VDTLRRIRAKSSMPVVMLTAKGDDTDRIIGLELGADDYVPKPCSPREIAARIRAILRRAS 120 ++TL IR S +PV+MLTA+GD++DR GLELGADDYVPKPC+PRE+ ARIRAILRRA Sbjct: 61 IETLGLIRKSSQIPVIMLTARGDESDRFFGLELGADDYVPKPCTPRELTARIRAILRRAK 120 Query: 121 AENNEQSPYSPLAVGALSMWPEQRRATWNGKPLELTSSEFNLLEVLARNAGKPVSKQHLS 180 S L VG L++WPEQRR +G + LTS+EFNLLEVLA+NAG VSK+ L+ Sbjct: 121 PTQESLQTESQLTVGDLTIWPEQRRVELDGNTINLTSTEFNLLEVLAKNAGHVVSKKELA 180 Query: 181 EQGLGRPLARFDRNIDVHLSSIRQKIAALGSDKSCIQTVYRLGYQFIK 228 + G+G+PLARFDR+IDVH+SSIRQKI L + CIQTVYR+GYQ IK Sbjct: 181 KLGMGKPLARFDRSIDVHMSSIRQKIGTLKDGRDCIQTVYRMGYQLIK 228 >ref|YP_004693864.1| winged helix family two component transcriptional regulator [Nitrosomonas sp. Is79A3] gb|AEJ00465.1| two component transcriptional regulator, winged helix family [Nitrosomonas sp. Is79A3] Length = 234 Score = 301 bits (770), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 149/228 (65%), Positives = 178/228 (78%), Gaps = 1/228 (0%) Query: 2 SKVLLIDDDVELVDMLKEYLEQEKFEVNVAYDGEAGAAEALTGQYAIAVLDVMMPRLNGV 61 +KVLL+DDDVEL ML+ YLE+E FEV +DGE+G EAL G + IAVLDVMM +G+ Sbjct: 8 TKVLLVDDDVELAGMLRVYLEREGFEVKAVHDGESGITEALHGYHDIAVLDVMMSGKSGI 67 Query: 62 DTLRRIRAKSSMPVVMLTAKGDDTDRIIGLELGADDYVPKPCSPREIAARIRAILRRASA 121 D L +IRA +MPV+MLTA+GDD DRI+GLELGADDYV KPC+PRE+ ARIRAILRR+ Sbjct: 68 DVLVQIRAHGAMPVLMLTARGDDADRIVGLELGADDYVTKPCTPRELTARIRAILRRSGV 127 Query: 122 ENNEQSPYSPLAVGALSMWPEQRRATWNGKPLELTSSEFNLLEVLARNAGKPVSKQHLSE 181 + S SP+ VG LS+WPEQRRA GKPLELTS+EFNLLE LARNAG+ VSK LSE Sbjct: 128 AESASSS-SPIIVGTLSIWPEQRRAEGAGKPLELTSTEFNLLEALARNAGQVVSKSELSE 186 Query: 182 QGLGRPLARFDRNIDVHLSSIRQKIAALGSDKSCIQTVYRLGYQFIKE 229 Q LGRPLARFDR+IDVH+SSIR+K+ L +S I V+ GYQFI+E Sbjct: 187 QALGRPLARFDRSIDVHISSIRRKLEPLPDGRSRILAVFNKGYQFIRE 234 >ref|YP_003674624.1| winged helix family two component transcriptional regulator [Methylotenera versatilis 301] gb|ADI30047.1| two component transcriptional regulator, winged helix family [Methylotenera versatilis 301] Length = 228 Score = 301 bits (770), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 146/228 (64%), Positives = 178/228 (78%), Gaps = 1/228 (0%) Query: 1 MSKVLLIDDDVELVDMLKEYLEQEKFEVNVAYDGEAGAAEALTGQYAIAVLDVMMPRLNG 60 M VLLIDDDVELV+MLKEY+EQE F V VA+DG AGA L + I VLDVMMPRLNG Sbjct: 1 MQTVLLIDDDVELVEMLKEYIEQENFSVQVAHDGIAGAQMLLEQPFDIVVLDVMMPRLNG 60 Query: 61 VDTLRRIRAKSSMPVVMLTAKGDDTDRIIGLELGADDYVPKPCSPREIAARIRAILRRAS 120 ++TL+ IR S++PV+MLTAKGD+TDRI+GLELGADDYVPKP SPRE+ ARIRAILRR Sbjct: 61 IETLKAIRQHSNVPVIMLTAKGDNTDRIVGLELGADDYVPKPSSPRELVARIRAILRRVQ 120 Query: 121 AENNEQSPYSPLAVGALSMWPEQRRATWNGKPLELTSSEFNLLEVLARNAGKPVSKQHLS 180 + + + VGAL +WP QR W+ +P+ LTS+E++LLE+LA+NAG+ VSKQ LS Sbjct: 121 PLETINA-NTQITVGALCIWPAQRLVEWDSQPVILTSTEYSLLEILAKNAGQIVSKQDLS 179 Query: 181 EQGLGRPLARFDRNIDVHLSSIRQKIAALGSDKSCIQTVYRLGYQFIK 228 +Q LGRPLARFDR+IDVHLSSIR K+ L + CIQTV+R GYQ +K Sbjct: 180 QQALGRPLARFDRSIDVHLSSIRHKLGLLPDGRHCIQTVFRSGYQLLK 227 >gb|EGW60337.1| two component transcriptional regulator, winged helix family [Dechlorosoma suillum PS] Length = 229 Score = 300 bits (768), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 143/229 (62%), Positives = 178/229 (77%) Query: 1 MSKVLLIDDDVELVDMLKEYLEQEKFEVNVAYDGEAGAAEALTGQYAIAVLDVMMPRLNG 60 M+K+LL+DDD EL +ML+EYLE+E F V +A+DGEAGAA AL+G YA+AVLDVMMP+ +G Sbjct: 1 MTKLLLVDDDTELANMLREYLEREDFSVTLAHDGEAGAAAALSGDYALAVLDVMMPKASG 60 Query: 61 VDTLRRIRAKSSMPVVMLTAKGDDTDRIIGLELGADDYVPKPCSPREIAARIRAILRRAS 120 +D L RIRA S MPV+MLTAKGDD DRIIGLE+GADDYV KPC+PRE+ ARIRA+LRR Sbjct: 61 MDALSRIRAASDMPVIMLTAKGDDIDRIIGLEMGADDYVQKPCTPRELVARIRAVLRRFQ 120 Query: 121 AENNEQSPYSPLAVGALSMWPEQRRATWNGKPLELTSSEFNLLEVLARNAGKPVSKQHLS 180 + + + VG L++WP +R A W PL LTS+EFNLL+VLARNAGK VSK LS Sbjct: 121 TRESADDIPAQIRVGPLTLWPARRAAQWGEAPLTLTSTEFNLLQVLARNAGKAVSKPDLS 180 Query: 181 EQGLGRPLARFDRNIDVHLSSIRQKIAALGSDKSCIQTVYRLGYQFIKE 229 EQ +GRPL+RFDR+IDVH+SSIR K+ ++ IQTV +GYQ +E Sbjct: 181 EQAMGRPLSRFDRSIDVHMSSIRHKLGLREDGRTWIQTVRGIGYQLTRE 229 >ref|YP_004848753.1| two component transcriptional regulator [Pseudogulbenkiania sp. NH8B] dbj|BAK78339.1| two component transcriptional regulator [Pseudogulbenkiania sp. NH8B] Length = 241 Score = 300 bits (768), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 144/226 (63%), Positives = 179/226 (79%) Query: 3 KVLLIDDDVELVDMLKEYLEQEKFEVNVAYDGEAGAAEALTGQYAIAVLDVMMPRLNGVD 62 +VLL+DDDVEL +ML++YLE+E V +A +G G A AL+G Y + VLDVMMP +NG++ Sbjct: 15 RVLLVDDDVELAEMLRDYLEREGCMVALAANGSDGLALALSGDYHLLVLDVMMPGINGIE 74 Query: 63 TLRRIRAKSSMPVVMLTAKGDDTDRIIGLELGADDYVPKPCSPREIAARIRAILRRASAE 122 LRR+R +S++PV+MLTAKGDD DR++GLELGADDYVPKPC+PRE+ ARIRAILRR + Sbjct: 75 VLRRLRQQSALPVLMLTAKGDDLDRVLGLELGADDYVPKPCTPRELLARIRAILRRGALR 134 Query: 123 NNEQSPYSPLAVGALSMWPEQRRATWNGKPLELTSSEFNLLEVLARNAGKPVSKQHLSEQ 182 Q+ L GAL+MWP +RRA W+G+PLELTS+EF+LL L R AG PVSK LSE+ Sbjct: 135 EVRQAESDVLREGALAMWPRERRAEWDGRPLELTSTEFSLLAELVRQAGHPVSKGELSER 194 Query: 183 GLGRPLARFDRNIDVHLSSIRQKIAALGSDKSCIQTVYRLGYQFIK 228 LGRPLARFDR+IDVH+SSIRQK+ L +SCIQTV R GYQFIK Sbjct: 195 ALGRPLARFDRSIDVHMSSIRQKLGPLPDGRSCIQTVIRRGYQFIK 240