BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0084.p (149 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775609.1| tmRNA-binding protein [Herbaspirillum serope... 307 3e-82 ref|YP_004752009.1| tmRNA-binding protein SmpB [Collimonas fungi... 257 4e-67 ref|ZP_08274503.1| tmRNA-binding protein SmpB [Oxalobacteraceae ... 254 3e-66 ref|YP_001353728.1| SsrA-binding protein [Janthinobacterium sp. ... 249 1e-64 ref|YP_001099655.1| SsrA-binding protein [Herminiimonas arsenico... 246 6e-64 ref|ZP_04577940.1| tmRNA-binding protein SmpB [Oxalobacter formi... 244 2e-63 ref|ZP_04578028.1| tmRNA-binding protein small potein B [Oxaloba... 237 3e-61 ref|YP_315514.1| SsrA-binding protein [Thiobacillus denitrifican... 236 7e-61 ref|YP_726503.1| SsrA-binding protein [Ralstonia eutropha H16] >... 231 3e-59 ref|YP_002005679.1| ssra-binding protein [Cupriavidus taiwanensi... 230 6e-59 >ref|YP_003775609.1| tmRNA-binding protein [Herbaspirillum seropedicae SmR1] gb|ADJ63701.1| tmRNA-binding protein [Herbaspirillum seropedicae SmR1] Length = 149 Score = 307 bits (787), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 148/149 (99%), Positives = 149/149 (100%) Query: 1 MSIIDNKKAFFDYFIEERFEAGLVLQGWEVKSIRAGRVQLKEAYVIVRNGEVYLFGCHIS 60 MSIIDNKKAFFDYFIEERFEAGLVLQGWEVKSIRAGRVQLKEAYVIVRNGEVYLFGCHIS Sbjct: 1 MSIIDNKKAFFDYFIEERFEAGLVLQGWEVKSIRAGRVQLKEAYVIVRNGEVYLFGCHIS 60 Query: 61 ALTSTSTHVHPETTRTRKLLLNAAEISKLIGKVERSGYTLVPLNLHYSKGRIKCDIGLAK 120 ALTSTSTHVHPETTRTRKLLLNAAEISKLIGKVERSGYTLVPLNLHY+KGRIKCDIGLAK Sbjct: 61 ALTSTSTHVHPETTRTRKLLLNAAEISKLIGKVERSGYTLVPLNLHYNKGRIKCDIGLAK 120 Query: 121 GKKQHDKRETEKQRDSQREIQTAMKQHRR 149 GKKQHDKRETEKQRDSQREIQTAMKQHRR Sbjct: 121 GKKQHDKRETEKQRDSQREIQTAMKQHRR 149 >ref|YP_004752009.1| tmRNA-binding protein SmpB [Collimonas fungivorans Ter331] gb|AEK61186.1| tmRNA-binding protein SmpB [Collimonas fungivorans Ter331] Length = 149 Score = 257 bits (656), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 121/149 (81%), Positives = 132/149 (88%) Query: 1 MSIIDNKKAFFDYFIEERFEAGLVLQGWEVKSIRAGRVQLKEAYVIVRNGEVYLFGCHIS 60 MSIIDNKK F DYFIEERFEAG+ L GWEVKSIRAGR LKEAYVIVRNGE+YLFG HIS Sbjct: 1 MSIIDNKKVFHDYFIEERFEAGMELHGWEVKSIRAGRANLKEAYVIVRNGEIYLFGAHIS 60 Query: 61 ALTSTSTHVHPETTRTRKLLLNAAEISKLIGKVERSGYTLVPLNLHYSKGRIKCDIGLAK 120 AL S S+HVHPE RTRKLLL+A EI KLI KVERSGYTLVP+NLHY +GRIKC+IGLAK Sbjct: 61 ALLSASSHVHPEAVRTRKLLLHAEEIKKLIVKVERSGYTLVPINLHYLRGRIKCEIGLAK 120 Query: 121 GKKQHDKRETEKQRDSQREIQTAMKQHRR 149 GKKQHDKR+TE+QRD +RE+Q AMKQHRR Sbjct: 121 GKKQHDKRDTERQRDGEREVQAAMKQHRR 149 >ref|ZP_08274503.1| tmRNA-binding protein SmpB [Oxalobacteraceae bacterium IMCC9480] gb|EGF32018.1| tmRNA-binding protein SmpB [Oxalobacteraceae bacterium IMCC9480] Length = 149 Score = 254 bits (650), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 120/149 (80%), Positives = 132/149 (88%) Query: 1 MSIIDNKKAFFDYFIEERFEAGLVLQGWEVKSIRAGRVQLKEAYVIVRNGEVYLFGCHIS 60 M+I+DN+KAF DYF+EERFEAGL LQGWE KSIRAGRVQLKEAYVIVRN EV+LFG HIS Sbjct: 1 MTIVDNRKAFHDYFVEERFEAGLSLQGWEAKSIRAGRVQLKEAYVIVRNNEVFLFGAHIS 60 Query: 61 ALTSTSTHVHPETTRTRKLLLNAAEISKLIGKVERSGYTLVPLNLHYSKGRIKCDIGLAK 120 ALTSTSTHVHPE TRTRKLLL+AAEI K+I KVERSGYTLVP+NLHY GRIK ++GLAK Sbjct: 61 ALTSTSTHVHPEATRTRKLLLHAAEIKKMIIKVERSGYTLVPINLHYVGGRIKLEVGLAK 120 Query: 121 GKKQHDKRETEKQRDSQREIQTAMKQHRR 149 GKKQHDKR TE+ RD QRE+ AMK HRR Sbjct: 121 GKKQHDKRATERDRDGQREVAQAMKTHRR 149 >ref|YP_001353728.1| SsrA-binding protein [Janthinobacterium sp. Marseille] gb|ABR89249.1| SsrA(tmRNA)-binding protein [Janthinobacterium sp. Marseille] Length = 149 Score = 249 bits (636), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 116/149 (77%), Positives = 131/149 (87%) Query: 1 MSIIDNKKAFFDYFIEERFEAGLVLQGWEVKSIRAGRVQLKEAYVIVRNGEVYLFGCHIS 60 MSI+DN+KAF DYFIEERFEAG+VLQGWE KSIRAGRVQLKEAYVIVRN E++LFG HIS Sbjct: 1 MSIVDNRKAFHDYFIEERFEAGVVLQGWEAKSIRAGRVQLKEAYVIVRNDEIFLFGSHIS 60 Query: 61 ALTSTSTHVHPETTRTRKLLLNAAEISKLIGKVERSGYTLVPLNLHYSKGRIKCDIGLAK 120 L + STH+ P+ RTRKLLL + EI KL KVERSGYTLVPLNLHY +G IKC+IGLAK Sbjct: 61 PLATASTHITPDPVRTRKLLLKSEEIKKLSAKVERSGYTLVPLNLHYQRGYIKCEIGLAK 120 Query: 121 GKKQHDKRETEKQRDSQREIQTAMKQHRR 149 GKKQHDKR+TEKQRD+QREIQ+ MKQ+RR Sbjct: 121 GKKQHDKRDTEKQRDTQREIQSVMKQNRR 149 >ref|YP_001099655.1| SsrA-binding protein [Herminiimonas arsenicoxydans] emb|CAL61528.1| SsrA-binding protein [Herminiimonas arsenicoxydans] Length = 149 Score = 246 bits (629), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 117/149 (78%), Positives = 130/149 (87%) Query: 1 MSIIDNKKAFFDYFIEERFEAGLVLQGWEVKSIRAGRVQLKEAYVIVRNGEVYLFGCHIS 60 MSI+DN+KAF DYFIEERFEAG+VLQGWEVK+IRAGR QLKEAYVIVRN E++LFG HIS Sbjct: 1 MSIVDNRKAFHDYFIEERFEAGIVLQGWEVKAIRAGRSQLKEAYVIVRNDEIFLFGAHIS 60 Query: 61 ALTSTSTHVHPETTRTRKLLLNAAEISKLIGKVERSGYTLVPLNLHYSKGRIKCDIGLAK 120 L S STHV P+ RTRKLLL A EI KL KVER+GYTLVPLNLHY KG IKC+IGLAK Sbjct: 61 PLASASTHVTPDPVRTRKLLLKADEIKKLSIKVERAGYTLVPLNLHYQKGYIKCEIGLAK 120 Query: 121 GKKQHDKRETEKQRDSQREIQTAMKQHRR 149 GKKQHDKR++EKQRD+QREIQ MKQ+RR Sbjct: 121 GKKQHDKRDSEKQRDTQREIQAVMKQNRR 149 >ref|ZP_04577940.1| tmRNA-binding protein SmpB [Oxalobacter formigenes HOxBLS] gb|EEO28902.1| tmRNA-binding protein SmpB [Oxalobacter formigenes HOxBLS] Length = 149 Score = 244 bits (624), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 114/149 (76%), Positives = 133/149 (89%) Query: 1 MSIIDNKKAFFDYFIEERFEAGLVLQGWEVKSIRAGRVQLKEAYVIVRNGEVYLFGCHIS 60 M+I DNKKAF DYFIEERFEAG+ L+GWEVKSIRAGRVQLKEAYVIV++GE++LFG HIS Sbjct: 1 MTIADNKKAFHDYFIEERFEAGMALEGWEVKSIRAGRVQLKEAYVIVKSGEIFLFGAHIS 60 Query: 61 ALTSTSTHVHPETTRTRKLLLNAAEISKLIGKVERSGYTLVPLNLHYSKGRIKCDIGLAK 120 L + STH+ P+ R RKLL++A+EI KLIGKVER+GYTLVPLNLH+SKGRIKC+IGLAK Sbjct: 61 PLPTASTHIRPDPVRDRKLLMHASEIGKLIGKVERAGYTLVPLNLHFSKGRIKCEIGLAK 120 Query: 121 GKKQHDKRETEKQRDSQREIQTAMKQHRR 149 GKKQ+DKRETEK+RD QRE Q MKQ+RR Sbjct: 121 GKKQYDKRETEKERDWQREQQKIMKQNRR 149 >ref|ZP_04578028.1| tmRNA-binding protein small potein B [Oxalobacter formigenes OXCC13] gb|EEO29001.1| tmRNA-binding protein small potein B [Oxalobacter formigenes OXCC13] Length = 149 Score = 237 bits (605), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 112/149 (75%), Positives = 130/149 (87%) Query: 1 MSIIDNKKAFFDYFIEERFEAGLVLQGWEVKSIRAGRVQLKEAYVIVRNGEVYLFGCHIS 60 M+I DNKKAF DYFIEERFEAG+ L+GWEVKSIRAGRVQLKEAYVIV+ E++LFG HIS Sbjct: 1 MTIADNKKAFHDYFIEERFEAGMALEGWEVKSIRAGRVQLKEAYVIVKGVEIFLFGAHIS 60 Query: 61 ALTSTSTHVHPETTRTRKLLLNAAEISKLIGKVERSGYTLVPLNLHYSKGRIKCDIGLAK 120 L + STH+ P+ R RKLL++A EISKLIGKVER+GYTLVPLN+H+SKGRIKC+IGLAK Sbjct: 61 PLPTASTHIKPDPVRDRKLLMHADEISKLIGKVERAGYTLVPLNMHFSKGRIKCEIGLAK 120 Query: 121 GKKQHDKRETEKQRDSQREIQTAMKQHRR 149 GKKQ+DKRETEK+RD QRE Q MKQ+ R Sbjct: 121 GKKQYDKRETEKERDWQREQQKIMKQNIR 149 >ref|YP_315514.1| SsrA-binding protein [Thiobacillus denitrificans ATCC 25259] sp|Q3SI24.1|SSRP_THIDA RecName: Full=SsrA-binding protein gb|AAZ97709.1| tmRNA-binding protein SmpB [Thiobacillus denitrificans ATCC 25259] Length = 149 Score = 236 bits (603), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 110/141 (78%), Positives = 126/141 (89%) Query: 1 MSIIDNKKAFFDYFIEERFEAGLVLQGWEVKSIRAGRVQLKEAYVIVRNGEVYLFGCHIS 60 MSI DNKKAF DYFIEERFEAGLVL+GWEVK+IRAGRVQLKEAYV+V+NG VYL GCHIS Sbjct: 1 MSIADNKKAFHDYFIEERFEAGLVLEGWEVKAIRAGRVQLKEAYVVVKNGAVYLIGCHIS 60 Query: 61 ALTSTSTHVHPETTRTRKLLLNAAEISKLIGKVERSGYTLVPLNLHYSKGRIKCDIGLAK 120 L + STH+HP+ TR+RKLLL+AAEI+KLIGK ER+G+TLVPL++HYSKGRIK +IGLAK Sbjct: 61 PLPTASTHIHPDPTRSRKLLLHAAEINKLIGKTERAGFTLVPLDMHYSKGRIKLEIGLAK 120 Query: 121 GKKQHDKRETEKQRDSQREIQ 141 GKKQHDKR EK R+ QRE Q Sbjct: 121 GKKQHDKRAAEKDREWQREKQ 141 >ref|YP_726503.1| SsrA-binding protein [Ralstonia eutropha H16] sp|Q0KA36.1|SSRP_RALEH RecName: Full=SsrA-binding protein emb|CAJ93135.1| tmRNA-binding protein small potein B [Ralstonia eutropha H16] Length = 150 Score = 231 bits (589), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 108/145 (74%), Positives = 125/145 (86%) Query: 1 MSIIDNKKAFFDYFIEERFEAGLVLQGWEVKSIRAGRVQLKEAYVIVRNGEVYLFGCHIS 60 M+I DNKKAFFDYFIEER+EAG+VL+GWEVK+IRAGRVQ+KE YV+VR+ E++L G HIS Sbjct: 1 MTIADNKKAFFDYFIEERYEAGIVLEGWEVKAIRAGRVQIKEGYVVVRDAEMFLIGAHIS 60 Query: 61 ALTSTSTHVHPETTRTRKLLLNAAEISKLIGKVERSGYTLVPLNLHYSKGRIKCDIGLAK 120 L S STHV+P+ RTRKLLL A EI KLIGKVE+ GYTLVPLNLHY++GR+KC+IGLAK Sbjct: 61 PLQSASTHVNPDPVRTRKLLLKADEIKKLIGKVEQRGYTLVPLNLHYTRGRVKCEIGLAK 120 Query: 121 GKKQHDKRETEKQRDSQREIQTAMK 145 GKKQ DKRETEKQRD QRE MK Sbjct: 121 GKKQFDKRETEKQRDWQREKARIMK 145 >ref|YP_002005679.1| ssra-binding protein [Cupriavidus taiwanensis LMG 19424] sp|B3R297.1|SSRP_CUPTR RecName: Full=SsrA-binding protein emb|CAQ69614.1| RNA-binding protein, component of the SsrA quality-control system [Cupriavidus taiwanensis LMG 19424] Length = 149 Score = 230 bits (586), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 108/145 (74%), Positives = 124/145 (85%) Query: 1 MSIIDNKKAFFDYFIEERFEAGLVLQGWEVKSIRAGRVQLKEAYVIVRNGEVYLFGCHIS 60 M+I DNKKAFFDYFIEER+EAG+VL+GWEVK+IRAGRVQ+KE YV+VR+ E++L G HIS Sbjct: 1 MTIADNKKAFFDYFIEERYEAGIVLEGWEVKAIRAGRVQIKEGYVVVRDAEMFLIGAHIS 60 Query: 61 ALTSTSTHVHPETTRTRKLLLNAAEISKLIGKVERSGYTLVPLNLHYSKGRIKCDIGLAK 120 L S STHV P+ RTRKLLL A EI KLIGKVE+ GYTLVPLNLHY++GR+KC+IGLAK Sbjct: 61 PLQSASTHVKPDPVRTRKLLLKADEIKKLIGKVEQRGYTLVPLNLHYTRGRVKCEIGLAK 120 Query: 121 GKKQHDKRETEKQRDSQREIQTAMK 145 GKKQ DKRETEKQRD QRE MK Sbjct: 121 GKKQFDKRETEKQRDWQREKARIMK 145