BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0071.p (190 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775621.1| transmembrane protein [Herbaspirillum serope... 387 e-106 ref|YP_004753425.1| putative transmembrane protein [Collimonas f... 189 1e-46 ref|YP_842050.1| hypothetical protein H16_B2538 [Ralstonia eutro... 174 5e-42 ref|YP_004682622.1| hypothetical protein CNE_2c24450 [Cupriavidu... 173 1e-41 ref|YP_002008897.1| hypothetical protein RALTA_B2268 [Cupriavidu... 166 2e-39 ref|YP_588051.1| transmembrane protein [Cupriavidus metalliduran... 157 5e-37 ref|YP_299439.1| transmembrane protein [Ralstonia eutropha JMP13... 153 1e-35 ref|YP_584848.1| putative transmembrane protein [Cupriavidus met... 145 2e-33 ref|YP_294980.1| transmembrane protein [Ralstonia eutropha JMP13... 144 6e-33 ref|ZP_02884768.1| conserved hypothetical protein [Burkholderia ... 142 3e-32 >ref|YP_003775621.1| transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ63713.1| transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 195 Score = 387 bits (994), Expect = e-106, Method: Compositional matrix adjust. Identities = 190/190 (100%), Positives = 190/190 (100%) Query: 1 MKRALFPVALCLSGVALIPALGQAADSGYNIWTNEYTVSRQQLQSAIAPQFPRKLRYMDI 60 MKRALFPVALCLSGVALIPALGQAADSGYNIWTNEYTVSRQQLQSAIAPQFPRKLRYMDI Sbjct: 6 MKRALFPVALCLSGVALIPALGQAADSGYNIWTNEYTVSRQQLQSAIAPQFPRKLRYMDI 65 Query: 61 FDVTLSNPRLGMLPADNRMNTVVDAQIANPLLLQRPVNAVLTLSSAFKYDPATRSLRLDA 120 FDVTLSNPRLGMLPADNRMNTVVDAQIANPLLLQRPVNAVLTLSSAFKYDPATRSLRLDA Sbjct: 66 FDVTLSNPRLGMLPADNRMNTVVDAQIANPLLLQRPVNAVLTLSSAFKYDPATRSLRLDA 125 Query: 121 PKVDKVDSSDLPPQYAQQLTALGNAAADQFLRDYALYTFKPEQLQMNGKRFEPGKITVEQ 180 PKVDKVDSSDLPPQYAQQLTALGNAAADQFLRDYALYTFKPEQLQMNGKRFEPGKITVEQ Sbjct: 126 PKVDKVDSSDLPPQYAQQLTALGNAAADQFLRDYALYTFKPEQLQMNGKRFEPGKITVEQ 185 Query: 181 DAVKVEIKEK 190 DAVKVEIKEK Sbjct: 186 DAVKVEIKEK 195 >ref|YP_004753425.1| putative transmembrane protein [Collimonas fungivorans Ter331] gb|AEK62602.1| putative transmembrane protein [Collimonas fungivorans Ter331] Length = 207 Score = 189 bits (481), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 86/162 (53%), Positives = 118/162 (72%) Query: 28 GYNIWTNEYTVSRQQLQSAIAPQFPRKLRYMDIFDVTLSNPRLGMLPADNRMNTVVDAQI 87 GYNIW+NEYT S+QQLQ+AI +FP++LRY ++F+V L NP L + PA NR+ T V+ + Sbjct: 45 GYNIWSNEYTFSQQQLQTAIESKFPQQLRYAEVFNVGLKNPHLTLNPAQNRVLTQVNVSV 104 Query: 88 ANPLLLQRPVNAVLTLSSAFKYDPATRSLRLDAPKVDKVDSSDLPPQYAQQLTALGNAAA 147 +PLLL +N +TLSS KYD ATR+++LD P VD +D S++P QY QL+ +G A Sbjct: 105 VSPLLLAGTLNGAITLSSGLKYDRATRAVQLDNPTVDNIDFSNVPAQYKPQLSQIGAVVA 164 Query: 148 DQFLRDYALYTFKPEQLQMNGKRFEPGKITVEQDAVKVEIKE 189 Q L +Y +YTF+ E+L++NGK FEPG ITV+QD + VEI E Sbjct: 165 QQVLNNYPIYTFRSEELRLNGKTFEPGAITVQQDGIAVEINE 206 >ref|YP_842050.1| hypothetical protein H16_B2538 [Ralstonia eutropha H16] emb|CAJ97320.1| conserved hypothetical transmembrane protein [Ralstonia eutropha H16] Length = 184 Score = 174 bits (441), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 87/190 (45%), Positives = 129/190 (67%), Gaps = 8/190 (4%) Query: 1 MKRALFPVALCLSGVALIPALGQAADSGYNIWTNEYTVSRQQLQSAIAPQFPRKLRYMDI 60 +K +L A C++G + +A +GYNIWT EY++SRQ+LQ+A+ +FP LRY ++ Sbjct: 3 LKLSLLIAAACVAGAS-------SALAGYNIWTGEYSLSRQELQTALDQRFPATLRYAEV 55 Query: 61 FDVTLSNPRLGMLPADNRMNTVVDAQIANPLLLQRPVNAVLTLSSAFKYDPATRSLRLDA 120 V LS+PRL + A+NR+ T VDA++ N LL PV+ L L+S +YDPA R++ LD Sbjct: 56 VSVQLSHPRLVLDEANNRVTTHVDARLTNALLPSPPVDGKLALNSGVRYDPAKRAVLLDN 115 Query: 121 PKVDKVDSSDLPPQYAQQLTALGNAAADQFLRDYALYTFKPEQLQMNGKRFEPGKITVEQ 180 P V +V+ + + QY +QL A+G A Q L+DY +YTFKPE+L++ GK EPG ITV + Sbjct: 116 PTVQQVEVAGM-GQYREQLNAIGAVVAQQLLKDYPVYTFKPEELRVGGKDVEPGAITVGK 174 Query: 181 DAVKVEIKEK 190 D V+VE+K++ Sbjct: 175 DEVRVEVKQR 184 >ref|YP_004682622.1| hypothetical protein CNE_2c24450 [Cupriavidus necator N-1] gb|AEI81390.1| hypothetical membrane protein [Cupriavidus necator N-1] Length = 184 Score = 173 bits (439), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 87/190 (45%), Positives = 129/190 (67%), Gaps = 8/190 (4%) Query: 1 MKRALFPVALCLSGVALIPALGQAADSGYNIWTNEYTVSRQQLQSAIAPQFPRKLRYMDI 60 +K +L A C++G + +A +GYNIWT EY++SRQ+LQ+A+ +FP LRY ++ Sbjct: 3 VKPSLLIAAACVAGAS-------SALAGYNIWTGEYSLSRQELQTALDQRFPATLRYAEV 55 Query: 61 FDVTLSNPRLGMLPADNRMNTVVDAQIANPLLLQRPVNAVLTLSSAFKYDPATRSLRLDA 120 V LS+PRL + A+NR+ T VDA++ N LL PV+ L L+S +YDPA R++ LD Sbjct: 56 VSVQLSHPRLVLDEANNRVTTHVDARLTNALLPSPPVDGKLALNSGVRYDPAKRAVLLDN 115 Query: 121 PKVDKVDSSDLPPQYAQQLTALGNAAADQFLRDYALYTFKPEQLQMNGKRFEPGKITVEQ 180 P V +V+ + + QY +QL A+G A Q L+DY +YTFKPE+L++ GK EPG ITV + Sbjct: 116 PTVQQVEVAGM-GQYREQLNAIGAVVAQQLLKDYPVYTFKPEELRVGGKDVEPGAITVGK 174 Query: 181 DAVKVEIKEK 190 D V+VE+K++ Sbjct: 175 DEVRVEVKQR 184 >ref|YP_002008897.1| hypothetical protein RALTA_B2268 [Cupriavidus taiwanensis LMG 19424] emb|CAQ72845.1| conserved hypothetical protein; putative exported protein [Cupriavidus taiwanensis LMG 19424] Length = 189 Score = 166 bits (420), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 78/163 (47%), Positives = 113/163 (69%), Gaps = 1/163 (0%) Query: 28 GYNIWTNEYTVSRQQLQSAIAPQFPRKLRYMDIFDVTLSNPRLGMLPADNRMNTVVDAQI 87 GYN+WT EY+++RQ+LQ+ + +FP LRY ++ V LS+PRL + A NR+ T VDA++ Sbjct: 28 GYNVWTGEYSLTRQELQTELDKRFPATLRYAEVVSVQLSHPRLVLDEASNRLTTHVDARL 87 Query: 88 ANPLLLQRPVNAVLTLSSAFKYDPATRSLRLDAPKVDKVDSSDLPPQYAQQLTALGNAAA 147 N LL PVN L L+S +YDPA R++ LD P V +VD + + Y +QL A+G A Sbjct: 88 TNALLPSPPVNGKLALNSGIRYDPARRAVLLDNPTVQQVDVTGM-ALYREQLNAIGAVVA 146 Query: 148 DQFLRDYALYTFKPEQLQMNGKRFEPGKITVEQDAVKVEIKEK 190 Q L+DY +YTFKPE+L++ G+ EPG ITV +D V+VE+K++ Sbjct: 147 QQLLKDYPIYTFKPEELRVGGREVEPGAITVGKDEVRVEVKQR 189 >ref|YP_588051.1| transmembrane protein [Cupriavidus metallidurans CH34] gb|ABF12782.1| conserved hypothetical protein; putative transmembrane protein [Cupriavidus metallidurans CH34] Length = 193 Score = 157 bits (398), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 77/164 (46%), Positives = 107/164 (65%), Gaps = 1/164 (0%) Query: 25 ADSGYNIWTNEYTVSRQQLQSAIAPQFPRKLRYMDIFDVTLSNPRLGMLPADNRMNTVVD 84 A +GYN+WT EYT ++ +LQSA+ +FP LRY ++ V LSNPRL + A NR+ T VD Sbjct: 29 AHAGYNVWTGEYTFTKDELQSAVDKRFPATLRYGELVSVRLSNPRLVLDEAGNRITTRVD 88 Query: 85 AQIANPLLLQRPVNAVLTLSSAFKYDPATRSLRLDAPKVDKVDSSDLPPQYAQQLTALGN 144 A ++N ++ PVN L L+S +YD R++ LD P V V+ + QY +QL A+G Sbjct: 89 AALSNTVIPSPPVNGSLALNSGVRYDATRRAVLLDNPTVQDVEVQGM-SQYREQLNAIGA 147 Query: 145 AAADQFLRDYALYTFKPEQLQMNGKRFEPGKITVEQDAVKVEIK 188 A Q L+DY LYTFKPE+L+ NGK EPG ITV D ++V++ Sbjct: 148 VVAQQLLKDYPLYTFKPEELRFNGKDVEPGAITVAPDGIRVQVN 191 >ref|YP_299439.1| transmembrane protein [Ralstonia eutropha JMP134] gb|AAZ64595.1| probable transmembrane protein [Ralstonia eutropha JMP134] Length = 190 Score = 153 bits (387), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 74/163 (45%), Positives = 106/163 (65%), Gaps = 1/163 (0%) Query: 28 GYNIWTNEYTVSRQQLQSAIAPQFPRKLRYMDIFDVTLSNPRLGMLPADNRMNTVVDAQI 87 GYNIWT EYT ++Q+LQ A+ +FP LRY + V L+ PRL + A+NR+ T +DA++ Sbjct: 29 GYNIWTGEYTFTKQELQQAVDKRFPATLRYAQVVSVQLTRPRLVLDDANNRITTQMDARL 88 Query: 88 ANPLLLQRPVNAVLTLSSAFKYDPATRSLRLDAPKVDKVDSSDLPPQYAQQLTALGNAAA 147 N L PVN L+L+S +YD A R++ LD P V V+ + Y +QL A+G A Sbjct: 89 TNALTASPPVNGTLSLNSGLRYDKAQRAVLLDNPTVQDVEVQGM-ALYKEQLNAIGAVVA 147 Query: 148 DQFLRDYALYTFKPEQLQMNGKRFEPGKITVEQDAVKVEIKEK 190 Q L+DY +YTFKPE+L+ GK EPG ITV + ++VE+K++ Sbjct: 148 QQLLKDYPIYTFKPEELRFGGKDVEPGAITVAPEGIRVEVKDQ 190 >ref|YP_584848.1| putative transmembrane protein [Cupriavidus metallidurans CH34] gb|ABF09579.1| conserved hypothetical protein; putative transmembrane protein [Cupriavidus metallidurans CH34] Length = 188 Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 72/161 (44%), Positives = 102/161 (63%) Query: 27 SGYNIWTNEYTVSRQQLQSAIAPQFPRKLRYMDIFDVTLSNPRLGMLPADNRMNTVVDAQ 86 G +++ NEYT S+ QLQ+A+ +FP RYM++FD+ L+NP+L + NR+ DA Sbjct: 25 GGCSVFRNEYTFSQSQLQAALEKKFPFNKRYMELFDIQLANPQLMLDATRNRVTVAFDAT 84 Query: 87 IANPLLLQRPVNAVLTLSSAFKYDPATRSLRLDAPKVDKVDSSDLPPQYAQQLTALGNAA 146 I N L ++P+ L SA +YD TRSL L P+V + D LP Q+++QL ALG Sbjct: 85 IDNRLFFRQPLTGRFALDSALRYDQPTRSLVLQDPEVKQFDVQGLPSQFSRQLNALGGIL 144 Query: 147 ADQFLRDYALYTFKPEQLQMNGKRFEPGKITVEQDAVKVEI 187 ++Q L+ Y LYTFKPEQL++ G EPG ITV D + V+I Sbjct: 145 SEQLLQGYPLYTFKPEQLRLAGTNVEPGTITVLPDGINVKI 185 >ref|YP_294980.1| transmembrane protein [Ralstonia eutropha JMP134] gb|AAZ60136.1| probable transmembrane protein [Ralstonia eutropha JMP134] Length = 186 Score = 144 bits (363), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 69/156 (44%), Positives = 100/156 (64%) Query: 34 NEYTVSRQQLQSAIAPQFPRKLRYMDIFDVTLSNPRLGMLPADNRMNTVVDAQIANPLLL 93 NEYT S+ QLQSA+ +FP RY+DIFD+ L+NPRL + PA NR+N DA + N L Sbjct: 30 NEYTFSQSQLQSALERKFPFNKRYLDIFDIQLANPRLTLDPARNRVNLQFDATVDNKLFF 89 Query: 94 QRPVNAVLTLSSAFKYDPATRSLRLDAPKVDKVDSSDLPPQYAQQLTALGNAAADQFLRD 153 ++ ++ L S +YD + S+ L P+V + D LP Q+++Q+ ALG A+Q L+ Sbjct: 90 RQALSGRFALDSGLRYDAPSHSVVLQDPEVQQFDVQGLPGQFSRQINALGGILAEQLLQG 149 Query: 154 YALYTFKPEQLQMNGKRFEPGKITVEQDAVKVEIKE 189 YALYTF+P+QL++ G EPG IT+ D + V+I Sbjct: 150 YALYTFRPDQLRIAGTDVEPGTITILSDGINVKINR 185 >ref|ZP_02884768.1| conserved hypothetical protein [Burkholderia graminis C4D1M] gb|EDT09562.1| conserved hypothetical protein [Burkholderia graminis C4D1M] Length = 196 Score = 142 bits (357), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 73/171 (42%), Positives = 104/171 (60%), Gaps = 1/171 (0%) Query: 20 ALGQAADSGYNIWTNEYTVSRQQLQSAIAPQFPRKLRYMDIFDVTLSNPRLGMLPADNRM 79 +L A S + + YT S+QQ+Q A+ +FP + +FDV LS+P +G+LP NR+ Sbjct: 27 SLAACATSTFPFIPSHYTFSQQQVQDAVQRKFPYQRTVSQVFDVALSHPVVGLLPDANRV 86 Query: 80 NTVVDAQIANPLLLQRPVNAVLTLSSAFKYDPATRSLRLDAPKVDKVDSSDLPPQYAQQL 139 + +DA +A+P + Q PV+ V TLSS YD A+RS+ L +P VD V S Y QQ+ Sbjct: 87 SVKLDAHLASPFMPQ-PVDGVFTLSSELAYDAASRSVVLKSPNVDNVSVSGQAQAYTQQI 145 Query: 140 TALGNAAADQFLRDYALYTFKPEQLQMNGKRFEPGKITVEQDAVKVEIKEK 190 A A Q L +Y +YTFKPEQLQ G +EPG IT+ + ++V+I EK Sbjct: 146 NAAAAVLATQLLSNYPIYTFKPEQLQFAGVNYEPGTITILTNGIRVQIVEK 196