BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0068.p (416 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775625.1| transmembrane protein [Herbaspirillum serope... 796 0.0 ref|YP_004752998.1| putative integral membrane sensor protein [C... 231 2e-58 ref|YP_001898426.1| putative PAS/PAC sensor protein [Ralstonia p... 214 3e-53 ref|ZP_07675846.1| membrane protein [Ralstonia sp. 5_7_47FAA] >g... 214 3e-53 emb|CCA85886.1| putative transmembrane protein; integral membran... 213 5e-53 ref|YP_582758.1| putative integral membrane sensor protein [Cupr... 213 6e-53 ref|YP_003753048.1| transmembrane protein; integral membrane sen... 210 3e-52 ref|YP_002232724.1| hypothetical protein BCAM0091 [Burkholderia ... 204 2e-50 ref|YP_001778023.1| putative PAS/PAC sensor protein [Burkholderi... 204 3e-50 ref|YP_624918.1| putative integral membrane sensor protein [Burk... 201 1e-49 >ref|YP_003775625.1| transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ63717.1| transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 438 Score = 796 bits (2057), Expect = 0.0, Method: Compositional matrix adjust. Identities = 416/416 (100%), Positives = 416/416 (100%) Query: 1 VQSNELAAPLAWAAAYFLAGLACLHLHGAIFAGGHVWLPAGITVAALWLTPLPRWFALLV 60 VQSNELAAPLAWAAAYFLAGLACLHLHGAIFAGGHVWLPAGITVAALWLTPLPRWFALLV Sbjct: 23 VQSNELAAPLAWAAAYFLAGLACLHLHGAIFAGGHVWLPAGITVAALWLTPLPRWFALLV 82 Query: 61 LIIAAQVGLGALEQRELWRVLLLAFNETGVAAVAVALLHRRPRPLSGLAFVRALLLVAGG 120 LIIAAQVGLGALEQRELWRVLLLAFNETGVAAVAVALLHRRPRPLSGLAFVRALLLVAGG Sbjct: 83 LIIAAQVGLGALEQRELWRVLLLAFNETGVAAVAVALLHRRPRPLSGLAFVRALLLVAGG 142 Query: 121 ASVASALLGAGWQQVTQGLPFASSLRLWIFSELVGILLVTPALLLCVPGARAHPRGLARG 180 ASVASALLGAGWQQVTQGLPFASSLRLWIFSELVGILLVTPALLLCVPGARAHPRGLARG Sbjct: 143 ASVASALLGAGWQQVTQGLPFASSLRLWIFSELVGILLVTPALLLCVPGARAHPRGLARG 202 Query: 181 EFLIGLACLAGMLATTYLSFNSDLDRRLLDVEFATSYLPLLLLAVLTLAWGARSGAWAAL 240 EFLIGLACLAGMLATTYLSFNSDLDRRLLDVEFATSYLPLLLLAVLTLAWGARSGAWAAL Sbjct: 203 EFLIGLACLAGMLATTYLSFNSDLDRRLLDVEFATSYLPLLLLAVLTLAWGARSGAWAAL 262 Query: 241 LLALLAMVYDARGGGPFVKLVQLHASNALLELQVYLGVAALLALFVGAFKTRRGQQLDEA 300 LLALLAMVYDARGGGPFVKLVQLHASNALLELQVYLGVAALLALFVGAFKTRRGQQLDEA Sbjct: 263 LLALLAMVYDARGGGPFVKLVQLHASNALLELQVYLGVAALLALFVGAFKTRRGQQLDEA 322 Query: 301 ERSRRELHLALAASRQVAYVFDVQTRCFTWQGDVAGVLGVPTAAAQTLDQVLALVSPLDQ 360 ERSRRELHLALAASRQVAYVFDVQTRCFTWQGDVAGVLGVPTAAAQTLDQVLALVSPLDQ Sbjct: 323 ERSRRELHLALAASRQVAYVFDVQTRCFTWQGDVAGVLGVPTAAAQTLDQVLALVSPLDQ 382 Query: 361 ARLRQRWLDGEDPARVVQMPVRLQDGSAVLDRSRPLPRSRDAGPRVGGVWLIDPAD 416 ARLRQRWLDGEDPARVVQMPVRLQDGSAVLDRSRPLPRSRDAGPRVGGVWLIDPAD Sbjct: 383 ARLRQRWLDGEDPARVVQMPVRLQDGSAVLDRSRPLPRSRDAGPRVGGVWLIDPAD 438 >ref|YP_004752998.1| putative integral membrane sensor protein [Collimonas fungivorans Ter331] gb|AEK62175.1| putative integral membrane sensor protein [Collimonas fungivorans Ter331] Length = 475 Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 152/367 (41%), Positives = 215/367 (58%), Gaps = 1/367 (0%) Query: 3 SNELAAPLAWAAAYFLAGLACLHLHGAIFAGGHVWLPAGITVAALWLTPLPRWFALLVLI 62 +N+ L W Y + G L+G I G++WLPAG+TVAA LT RW L++ Sbjct: 45 TNQTVIALLWGLLYLVTGYMSHQLNGPIATTGYIWLPAGVTVAAFMLTRTARWLPLVIGF 104 Query: 63 IAAQVGLGALEQRELWRVLLLAFNETGVAAVAVALLHRRPRPLSGLAFVRALLLVAGGAS 122 + AQ+ LG +E+R L RV L A +E G+AA+ VAL+ + P+ GL FVR LL+ A S Sbjct: 105 VLAQLLLGVIEERNLLRVALFALDEIGIAAIVVALVRKAQLPMEGLYFVRGLLIAAVACS 164 Query: 123 VASALLGAGWQQVTQGLPFASSLRLWIFSELVGILLVTPALLLCVPGARAHPRGLARGEF 182 SA +GA W + Q +PF + R+W S+LVGIL+VTP L G+ R +F Sbjct: 165 AVSAAIGAAWFTLVQHVPFWPTARIWAASDLVGILIVTPVLAGWSRFHAMRSGGMDRSDF 224 Query: 183 LIGLACLAGMLATTYLSFNSD-LDRRLLDVEFATSYLPLLLLAVLTLAWGARSGAWAALL 241 L+GLA + T ++ F+ + + + V FA +Y+PL AV+TL WG R G+ A + Sbjct: 225 LLGLAAFLALGVTAFVIFDGNSISKFSAGVNFALTYIPLFFAAVVTLLWGGRGGSLAVAM 284 Query: 242 LALLAMVYDARGGGPFVKLVQLHASNALLELQVYLGVAALLALFVGAFKTRRGQQLDEAE 301 LA A++ +G GPF + + ++LLE Q+YL VAALL L + A KT R Q ++A Sbjct: 285 LAFFALLNTVQGEGPFAAFSDIFSRHSLLEAQLYLAVAALLCLLISALKTTREQLHEDAA 344 Query: 302 RSRRELHLALAASRQVAYVFDVQTRCFTWQGDVAGVLGVPTAAAQTLDQVLALVSPLDQA 361 + + ++ LALA SRQ+ Y D ++ W GD+ G+LGV AA LDQVLA V P D+ Sbjct: 345 QWKSDVELALAVSRQLVYSIDPHSKKLCWNGDLQGLLGVSNAAFSELDQVLAHVHPDDRQ 404 Query: 362 RLRQRWL 368 LR RWL Sbjct: 405 PLRSRWL 411 >ref|YP_001898426.1| putative PAS/PAC sensor protein [Ralstonia pickettii 12J] ref|YP_002980885.1| PAS/PAC sensor protein [Ralstonia pickettii 12D] gb|ACD25994.1| putative PAS/PAC sensor protein [Ralstonia pickettii 12J] gb|ACS62213.1| putative PAS/PAC sensor protein [Ralstonia pickettii 12D] Length = 428 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 155/414 (37%), Positives = 221/414 (53%), Gaps = 11/414 (2%) Query: 12 WAAAYFLAGLACLHLHGAIFAGGHVWLPAGITVAALWLTPLPRWFALLVLIIAAQVGLGA 71 W A Y +A + L+G I G++WLPAG+ +AA L P W L AQ+ L A Sbjct: 15 WGALYLVAAIVSHRLNGPIDMTGYIWLPAGVAMAAFMLRPYREWPGLGAAFAVAQLVLAA 74 Query: 72 LEQRELWRVLLLAFNETGVAAVAVALLHRRPRPLSGLAFVRALLLVAGGASVASALLGAG 131 +E+ +L +E G AA+AVAL+ PL GL FVRA+L+ +++ AL GA Sbjct: 75 IERTNPAHAMLFVLDEAGSAALAVALVRLARVPLEGLYFVRAMLVAGAVSALLGALFGAA 134 Query: 132 WQQVTQGLPFASSLRLWIFSELVGILLVTPALLLCVPGARAHPRGLARGEFLIGLACLAG 191 W +QG F LR+W S+ +G+L+VTP L G R +FL+GLA + Sbjct: 135 WFAWSQGGSFGHVLRIWAASDFLGVLIVTPVLAAWSRFRAFRSGGTDRTDFLLGLAAVVA 194 Query: 192 MLATTYLSFNSDLDRRLLD-VEFATSYLPLLLLAVLTLAWGARSGAWAALLLALLAMVYD 250 + ++Y+ F+ + D + D + FA +Y+PL V+ L WG R G+ A LLL L+A+ Sbjct: 195 LALSSYIIFDGNSDAKFGDGIGFALTYVPLFFAVVVALMWGGRGGSLAVLLLTLVALTQT 254 Query: 251 ARGGGPFVKLVQLHASNALLELQVYLGVAALLALFVGAFKTRRGQQLDEAERSRRELHLA 310 A G GPF L H +LLE Q+YLG+AALL L V A KT R Q +++ + + + LA Sbjct: 255 AEGDGPFAVLDH-HYGQSLLETQLYLGIAALLVLLVSALKTTREQLHEQSAQWQNRVELA 313 Query: 311 LAASRQVAYVFDVQTRCFTWQGDVAGVLGVPTAAAQTLDQVLALVSPLDQARLRQRWL-- 368 LAAS Q+ Y D + W GDVA + G A+ ++ VL LV P D+ LR RWL Sbjct: 314 LAASGQLVYTIDPASGRIDWGGDVALMFGHEPASMASISTVLQLVHPDDRDALRARWLGA 373 Query: 369 -----DGEDPARVVQMPVRLQDGS--AVLDRSRPLPRSRDAGPRVGGVWLIDPA 415 D PAR + + +DG+ V+D RPL + V G W ++ A Sbjct: 374 AVLEGDAATPARRQTLRITARDGTLHTVVDTGRPLTDAVGNTALVAGTWSVETA 427 >ref|ZP_07675846.1| membrane protein [Ralstonia sp. 5_7_47FAA] gb|EFP65833.1| membrane protein [Ralstonia sp. 5_7_47FAA] Length = 428 Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 155/414 (37%), Positives = 221/414 (53%), Gaps = 11/414 (2%) Query: 12 WAAAYFLAGLACLHLHGAIFAGGHVWLPAGITVAALWLTPLPRWFALLVLIIAAQVGLGA 71 W A Y +A + L+G I G++WLPAG+ +AA L P W L AQ+ L A Sbjct: 15 WGALYLVAAIVSHRLNGPIDMTGYIWLPAGVAMAAFMLRPYREWPGLGAAFAVAQLMLAA 74 Query: 72 LEQRELWRVLLLAFNETGVAAVAVALLHRRPRPLSGLAFVRALLLVAGGASVASALLGAG 131 +E+ +L +E G AA+AVAL+ PL GL FVRA+L+ +++ AL GA Sbjct: 75 IERTNPAHAMLFVLDEAGSAALAVALVRLARVPLEGLYFVRAMLVAGAVSALLGALFGAA 134 Query: 132 WQQVTQGLPFASSLRLWIFSELVGILLVTPALLLCVPGARAHPRGLARGEFLIGLACLAG 191 W +QG F LR+W S+ +G+L+VTP L G R +FL+GLA + Sbjct: 135 WFAWSQGGSFGHVLRIWAASDFLGVLIVTPVLAAWSRFRAFRSGGTDRTDFLLGLAAVVA 194 Query: 192 MLATTYLSFNSDLDRRLLD-VEFATSYLPLLLLAVLTLAWGARSGAWAALLLALLAMVYD 250 + ++Y+ F+ + D + D + FA +Y+PL V+ L WG R G+ A LLL L+A+ Sbjct: 195 LALSSYIIFDGNSDAKFGDGIGFALTYVPLFFAVVVALMWGGRGGSLAVLLLTLVALTQT 254 Query: 251 ARGGGPFVKLVQLHASNALLELQVYLGVAALLALFVGAFKTRRGQQLDEAERSRRELHLA 310 A G GPF L H +LLE Q+YLG+AALL L V A KT R Q +++ + + + LA Sbjct: 255 AEGDGPFAVLDH-HYGQSLLETQLYLGIAALLVLLVSALKTTREQLHEQSAQWQNRVELA 313 Query: 311 LAASRQVAYVFDVQTRCFTWQGDVAGVLGVPTAAAQTLDQVLALVSPLDQARLRQRWL-- 368 LAAS Q+ Y D + W GDVA + G A+ ++ VL LV P D+ LR RWL Sbjct: 314 LAASGQLVYTIDPASGRIDWGGDVALMFGHEPASMASISTVLQLVHPDDRDALRARWLGA 373 Query: 369 -----DGEDPARVVQMPVRLQDGS--AVLDRSRPLPRSRDAGPRVGGVWLIDPA 415 D PAR + + +DG+ V+D RPL + V G W ++ A Sbjct: 374 AVLEGDAATPARRQTLRITARDGTLHTVVDTGRPLTDAVGNTALVAGTWSVETA 427 >emb|CCA85886.1| putative transmembrane protein; integral membrane sensor domain [Ralstonia syzygii R24] Length = 427 Score = 213 bits (542), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 156/418 (37%), Positives = 211/418 (50%), Gaps = 12/418 (2%) Query: 8 APLAWAAAYFLAGLACLHLHGAIFAGGHVWLPAGITVAALWLTPLPRWFALLVLIIAAQV 67 A L W A Y LA + L+G + G++WLPAG+ +AA L P W L AQ+ Sbjct: 11 AALLWGALYLLAAVVSHRLNGPVDMTGYIWLPAGVVMAAFMLRPYREWPGLGAAFAVAQL 70 Query: 68 GLGALEQRELWRVLLLAFNETGVAAVAVALLHRRPRPLSGLAFVRALLLVAGGASVASAL 127 L A E+ LL +ETG AA+AV L+ PL GL FVRA+L ++ SAL Sbjct: 71 VLCAFEKGNPAHALLFVLDETGSAALAVTLVRLARVPLEGLDFVRAMLAAGALGALLSAL 130 Query: 128 LGAGWQQVTQGLPFASSLRLWIFSELVGILLVTPALLLCVPGARAHPRGLARGEFLIGLA 187 GA W +Q F LR+W S+ +G+L++TP L P G R E L+GLA Sbjct: 131 PGAAWFAWSQDASFGQVLRIWAASDFLGVLIITPVLATWSRFRAFRPGGPDRTETLLGLA 190 Query: 188 CLAGMLATTYLSFNSDLDRRL-LDVEFATSYLPLLLLAVLTLAWGARSGAWAALLLALLA 246 ++ + +L F+ + R + FA +Y+PL V+TL WG R G+ A L+LAL+ Sbjct: 191 ASVALVVSAHLVFDGNSTARFGTGIGFALTYVPLFFAVVVTLLWGGRGGSAAVLMLALVV 250 Query: 247 MVYDARGGGPFVKLVQLHASNALLELQVYLGVAALLALFVGAFKTRRGQQLDEAERSRRE 306 ++ A G GPF L H +LLE Q+YLG+ AL L V A KT R Q ++ R + Sbjct: 251 LIETAEGDGPFAVLDH-HYGQSLLEAQLYLGITALQVLLVSALKTTREQLHEQGARWQSR 309 Query: 307 LHLALAASRQVAYVFDVQTRCFTWQGDVAGVLGVPTAAAQTLDQVLALVSPLDQARLRQR 366 + LALAA+ Q+ Y D W GDV + G A ++ VL LV P D+ LR R Sbjct: 310 VELALAAAGQLVYTIDPARGRIDWGGDVELLFGHEAATMASVATVLQLVHPDDRETLRAR 369 Query: 367 WLDGEDPARVVQMPVRLQ-------DGS--AVLDRSRPLPRSRDAGPRVGGVWLIDPA 415 WL G PA V P R Q DG+ V+D L + V G W I+ A Sbjct: 370 WL-GAAPADVDATPARRQTLQVTARDGTLHTVIDSGATLADTAGNPVLVAGTWAIETA 426 >ref|YP_582758.1| putative integral membrane sensor protein [Cupriavidus metallidurans CH34] gb|ABF07489.1| putative integral membrane sensor protein precursor [Cupriavidus metallidurans CH34] Length = 429 Score = 213 bits (542), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 157/406 (38%), Positives = 225/406 (55%), Gaps = 6/406 (1%) Query: 12 WAAAYFLAGLACLHLHGAIFAGGHVWLPAGITVAALWLTPLPRWFALLVLIIAAQVGLGA 71 WA YF+ G +G A G++WLPAG+TVAA L P+ RW L + + AQ+ LG Sbjct: 13 WAILYFVLGYFSHKFNGPFTAAGYIWLPAGVTVAAFMLAPMRRWLGLGLAFLVAQMLLGM 72 Query: 72 LEQRELWRVLLLAFNETGVAAVAVALLHRRPRPLSGLAFVRALLLVAGGASVASALLGAG 131 +E R+ +R+LL + +E G AA+AVA++H L GLAF+R LLL ASV A++GAG Sbjct: 73 VEGRDAFRMLLFSLDEIGFAALAVAVIHLTKFSLEGLAFLRGLLLAGVIASVGGAVIGAG 132 Query: 132 WQQVTQGLPFASSLRLWIFSELVGILLVTPALLLCVPGARAHPRGLARGEFLIGLACLAG 191 W + +PF ++ ++W ++ VG+L+VTP A G GEF GLA LA Sbjct: 133 WFWLFLDVPFWATAKVWAAADFVGVLIVTPVFAGWARFRAARSGGRQPGEFFFGLAALAC 192 Query: 192 MLATTYLSFNSDLDRRL-LDVEFATSYLPLLLLAVLTLAWGARSGAWAALLLALLAMVYD 250 +LAT L F+ +L L V +A +Y+PL +A++ L G R G+ A LL +L +V Sbjct: 193 VLATAALVFDGTRIAQLSLGVAYALTYIPLFFVAIVALLLGGRGGSVAVALLTVLVLVNT 252 Query: 251 ARGGGPFVKLVQLHASNALLELQVYLGVAALLALFVGAFKTRRGQQLDEAERSRRELHLA 310 A+G GPF + H ++LL Q+YL VAALL L + +T R Q +A + ++ LA Sbjct: 253 AQGDGPFAETALYH-GDSLLIAQLYLAVAALLTLLINTLRTAREQTNAQAAARQNDVELA 311 Query: 311 LAASRQVAYVFDVQTRCFTWQGDVAGVLGVPTAAAQTLDQVLALVSPLDQARLRQRWLDG 370 LAAS Q+ Y D + W G V LG+ +A TLD VLA V P D+A +R+RWL Sbjct: 312 LAASGQLVYRLDPHSGRLRWSGSVERALGLHDSALSTLDDVLARVHPDDRAEVRRRWLRE 371 Query: 371 EDPARVVQMPVRL----QDGSAVLDRSRPLPRSRDAGPRVGGVWLI 412 D + RL + ++D S PL D+ + G W + Sbjct: 372 CDGETRGDLTFRLLLPAGATTTIVDMSGPLLDGDDSVALIAGAWRV 417 >ref|YP_003753048.1| transmembrane protein; integral membrane sensor domain [Ralstonia solanacearum PSI07] emb|CBJ51778.1| putative transmembrane protein; integral membrane sensor domain [Ralstonia solanacearum PSI07] Length = 427 Score = 210 bits (535), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 156/418 (37%), Positives = 209/418 (50%), Gaps = 12/418 (2%) Query: 8 APLAWAAAYFLAGLACLHLHGAIFAGGHVWLPAGITVAALWLTPLPRWFALLVLIIAAQV 67 A L W Y LA L+G + G++WLPAG+ +AA L P W L AQ+ Sbjct: 11 AALLWGVLYLLAAAVSHRLNGPVDMTGYIWLPAGVVMAAFMLRPYREWPGLGAAFAVAQL 70 Query: 68 GLGALEQRELWRVLLLAFNETGVAAVAVALLHRRPRPLSGLAFVRALLLVAGGASVASAL 127 L A E+ LL +ETG AA+AV L+ PL GL FVRA+L +++ SAL Sbjct: 71 VLCAFEKGNPAHALLFVLDETGSAALAVTLVRLARVPLEGLDFVRAMLAAGALSALLSAL 130 Query: 128 LGAGWQQVTQGLPFASSLRLWIFSELVGILLVTPALLLCVPGARAHPRGLARGEFLIGLA 187 GA W +Q F LR+W S+ +G+L+VTP L P G R E L+GLA Sbjct: 131 PGAAWFAWSQDASFGQVLRIWAASDFLGVLIVTPVLATWSRFRAFRPGGPDRAETLLGLA 190 Query: 188 CLAGMLATTYLSFNSDLDRRL-LDVEFATSYLPLLLLAVLTLAWGARSGAWAALLLALLA 246 ++ + +L F+ D R + FA +Y+PL V+ L WG R G+ A L+LAL+ Sbjct: 191 ASVALVVSAHLVFDGDSTARFGTGIGFALTYVPLFFAVVVALLWGGRGGSAAVLMLALVV 250 Query: 247 MVYDARGGGPFVKLVQLHASNALLELQVYLGVAALLALFVGAFKTRRGQQLDEAERSRRE 306 ++ A G GPF L H +LLE Q+YLG+ AL L V A KT R Q ++ R + Sbjct: 251 LIETAEGDGPFAVLDH-HYGQSLLEAQLYLGITALQVLLVSALKTTREQLHEQGARWQGR 309 Query: 307 LHLALAASRQVAYVFDVQTRCFTWQGDVAGVLGVPTAAAQTLDQVLALVSPLDQARLRQR 366 + LALAA+ Q+ Y D W GDV + G A ++ VL LV P D+ LR R Sbjct: 310 VELALAAAGQLVYTIDPARGRIDWGGDVELLFGHEAATMASVATVLQLVHPDDRETLRAR 369 Query: 367 WLDGEDPARVVQMPVRLQ-------DGS--AVLDRSRPLPRSRDAGPRVGGVWLIDPA 415 WL G PA V P R Q DG+ V+D L + V G W I+ A Sbjct: 370 WL-GAAPADVDATPARRQTLQITARDGTLHTVIDSGATLADTAGNPVLVAGTWAIETA 426 >ref|YP_002232724.1| hypothetical protein BCAM0091 [Burkholderia cenocepacia J2315] emb|CAR53947.1| putative membrane protein [Burkholderia cenocepacia J2315] Length = 430 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 149/409 (36%), Positives = 212/409 (51%), Gaps = 15/409 (3%) Query: 20 GLACLHLHGAIFAGGHVWLPAGITVAALWLTPLPRWFALLVLIIAAQVGLGALEQRELWR 79 G +G + G++WLPAG+TV A L P+ W L + Q+ L A+E L Sbjct: 24 GYISHEFNGPVRLTGYIWLPAGVTVGAFMLRPMRDWLTLAGAFLVGQLALTAIEHGSLVN 83 Query: 80 VLLLAFNETGVAAVAVALLHRRPRPLSGLAFVRALLLVAGGASVASALLGAGWQQVTQGL 139 +L +E G AA+AV L+ R L GL F+R+++L A V A+ GA W +G Sbjct: 84 AVLFTVDEVGAAALAVWLVQRVRFSLEGLYFLRSVILAGMIAGVVGAIGGAAWYTTLKGA 143 Query: 140 PFASSLRLWIFSELVGILLVTPALLLCVPGARAHPRG-LARGEFLIGLACLAGMLATTYL 198 PF +W S+ VG+LLVTP +L RAH G R + ++G+ + A + Sbjct: 144 PFFDVWSVWAASDFVGVLLVTP-VLASWSRFRAHRSGDHERFDLVLGIVAFVLLAAVALV 202 Query: 199 SFNSDLDRRL-LDVEFATSYLPLLLLAVLTLAWGARSGAWAALLLALLAMVYDARGGGPF 257 F+ D R+ FA +Y+PL L +TL G R+G+ + L+LAL+ + A+G GPF Sbjct: 203 IFDGDTSRKFGTGAGFALTYVPLFLTVAVTLLLGGRAGSSSVLVLALIVIEQTAQGDGPF 262 Query: 258 VKLVQLHASNALLELQVYLGVAALLALFVGAFKTRRGQQLDEAERSRRELHLALAASRQV 317 L H +ALLE Q+YL VA+LL L V KT R + + A + + LALA++ Q+ Sbjct: 263 ASL-HAHYGSALLEAQLYLAVASLLVLTVSTLKTTRERVHEHAAVLQNNMELALASAGQI 321 Query: 318 AYVFDVQTRCFTWQGDVAGVLGVPTAAAQ--TLDQVLALVSPLDQARLRQRW---LDGED 372 AYV D ++ W GDV V GV AAQ T+ VL V P D+ LR W + GED Sbjct: 322 AYVLDPESGRIEWSGDVERVFGVGVDAAQIATVPLVLERVQPGDRDALRDYWNAEIAGED 381 Query: 373 PARVVQMPVRLQDGS--AVLDRSRPLPRSRDAGPRVGGVWLID---PAD 416 A + + + L+DG + D PL S V GVW ++ PAD Sbjct: 382 RAS-LSLRIVLRDGGTRTITDHGAPLLDSNVDVTVVAGVWQLERVWPAD 429 >ref|YP_001778023.1| putative PAS/PAC sensor protein [Burkholderia cenocepacia MC0-3] ref|ZP_04942738.1| PAS/PAC domain [Burkholderia cenocepacia PC184] gb|EAY65909.1| PAS/PAC domain [Burkholderia cenocepacia PC184] gb|ACA93533.1| putative PAS/PAC sensor protein [Burkholderia cenocepacia MC0-3] Length = 430 Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 148/409 (36%), Positives = 213/409 (52%), Gaps = 15/409 (3%) Query: 20 GLACLHLHGAIFAGGHVWLPAGITVAALWLTPLPRWFALLVLIIAAQVGLGALEQRELWR 79 G +G + G++WLPAG+TV A L P+ W L + Q+ L A+E L Sbjct: 24 GYISHEFNGPVRLTGYIWLPAGVTVGAFMLRPMREWLTLAGAFLVGQLALSAIEHGSLVN 83 Query: 80 VLLLAFNETGVAAVAVALLHRRPRPLSGLAFVRALLLVAGGASVASALLGAGWQQVTQGL 139 +L +E G AA+AV L+ R L GL F+R+++L A V A+ GA W +G Sbjct: 84 AVLFTVDEVGAAALAVWLVQRVRFSLEGLYFLRSVILAGLIAGVVGAIGGAAWYTTLKGA 143 Query: 140 PFASSLRLWIFSELVGILLVTPALLLCVPGARAHPRG-LARGEFLIGLACLAGMLATTYL 198 PF +W S+ VG+LLVTP +L RAH G R + ++G+ A + + Sbjct: 144 PFFDVWSVWAASDFVGVLLVTP-VLASWSRFRAHRSGDHERFDLVLGIVAFALLAVVALV 202 Query: 199 SFNSDLDRRL-LDVEFATSYLPLLLLAVLTLAWGARSGAWAALLLALLAMVYDARGGGPF 257 F+ D R+ FA +Y+PL L +TL G R+G+ + L+LAL+ + A+G GPF Sbjct: 203 IFDGDTSRKFGTGAGFALTYVPLFLTVAVTLLLGGRAGSSSVLVLALIVIEQTAQGDGPF 262 Query: 258 VKLVQLHASNALLELQVYLGVAALLALFVGAFKTRRGQQLDEAERSRRELHLALAASRQV 317 L + H +ALLE Q+YL VA+LL L V KT R + + A + + LALA++ Q+ Sbjct: 263 ASLHE-HYGSALLEAQLYLAVASLLVLTVSTLKTTRERVHEHAAVLQNNMELALASAGQI 321 Query: 318 AYVFDVQTRCFTWQGDVAGVLGVPTAAAQ--TLDQVLALVSPLDQARLRQRW---LDGED 372 AYV D ++ W GDV V GV AAQ ++ VL V P D+ LR W + GED Sbjct: 322 AYVLDPESGRIEWSGDVERVFGVGVDAAQIASVPLVLERVQPGDRDALRDYWNAEIAGED 381 Query: 373 PARVVQMPVRLQDGS--AVLDRSRPLPRSRDAGPRVGGVWLID---PAD 416 A + + + L+DG + D PL S V GVW ++ PAD Sbjct: 382 RAS-LSLRIVLRDGGTRTITDHGAPLLDSNVDVTVVAGVWQLERVWPAD 429 >ref|YP_624918.1| putative integral membrane sensor protein [Burkholderia cenocepacia AU 1054] ref|YP_839416.1| putative integral membrane sensor protein [Burkholderia cenocepacia HI2424] gb|ABF79945.1| putative integral membrane sensor protein [Burkholderia cenocepacia AU 1054] gb|ABK12523.1| putative integral membrane sensor protein [Burkholderia cenocepacia HI2424] Length = 430 Score = 201 bits (512), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 148/409 (36%), Positives = 212/409 (51%), Gaps = 15/409 (3%) Query: 20 GLACLHLHGAIFAGGHVWLPAGITVAALWLTPLPRWFALLVLIIAAQVGLGALEQRELWR 79 G +G + G++WLPAG+TV A L P+ W L +A Q+ L A+E Sbjct: 24 GYISHEFNGPVRLTGYIWLPAGVTVGAFMLRPMREWLTLAGAFLAGQLALSAIEHGSFVN 83 Query: 80 VLLLAFNETGVAAVAVALLHRRPRPLSGLAFVRALLLVAGGASVASALLGAGWQQVTQGL 139 +L +E G AA+AV L+ R L GL F+R+++L A V A+ GA W +G Sbjct: 84 AVLFTVDEVGAAALAVWLVQRVRFSLEGLYFLRSVILAGLIAGVVGAIGGAAWYTTLKGA 143 Query: 140 PFASSLRLWIFSELVGILLVTPALLLCVPGARAHPRG-LARGEFLIGLACLAGMLATTYL 198 PF +W S+ VG+LLVTP +L RAH G R + ++G+ A + + Sbjct: 144 PFFDVWSVWAASDFVGVLLVTP-VLASWSRFRAHRSGDHERFDLVLGIVAFALLAVVALV 202 Query: 199 SFNSDLDRRL-LDVEFATSYLPLLLLAVLTLAWGARSGAWAALLLALLAMVYDARGGGPF 257 F+ D R+ FA +Y+PL L +TL G R+G+ + L+LAL+ + A+G GPF Sbjct: 203 IFDGDTARKFGTGAGFALTYVPLFLTVAVTLLLGGRAGSSSVLVLALIVIEQTAQGDGPF 262 Query: 258 VKLVQLHASNALLELQVYLGVAALLALFVGAFKTRRGQQLDEAERSRRELHLALAASRQV 317 L + H +ALLE Q+YL VA+LL L V KT R + + A + + LALA++ Q+ Sbjct: 263 ASLHE-HYGSALLEAQLYLAVASLLVLTVSTLKTTRERVHEHAAVLQNNMELALASAGQI 321 Query: 318 AYVFDVQTRCFTWQGDVAGVLGVPTAAAQ--TLDQVLALVSPLDQARLRQRW---LDGED 372 AYV D ++ W GDV V GV AAQ ++ VL V D+ LR W + GED Sbjct: 322 AYVLDPESGRIEWSGDVERVFGVGVDAAQIASVPLVLERVQAGDRDALRDYWNAEIAGED 381 Query: 373 PARVVQMPVRLQDGS--AVLDRSRPLPRSRDAGPRVGGVWLID---PAD 416 A + + + L+DG + D PL S V GVW I+ PAD Sbjct: 382 RAS-LSLRIVLRDGGTRTITDHGAPLLDSNVDVTVVAGVWQIERVWPAD 429