BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0063.p (138 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775630.1| plasmid stabilization protein [Herbaspirillu... 278 2e-73 ref|YP_973915.1| PilT domain-containing protein [Polaromonas nap... 197 4e-49 gb|EGY29145.1| putative nucleic acid-binding protein, contains P... 197 5e-49 ref|ZP_06487388.1| plasmid stability protein, putative [Xanthomo... 197 6e-49 ref|YP_002219894.1| PilT protein domain-containing protein [Acid... 193 9e-48 gb|EFW82856.1| PilT domain-containing protein [Pseudomonas syrin... 192 1e-47 ref|YP_003811087.1| Predicted nucleic acid-binding protein, cont... 192 1e-47 ref|ZP_00652964.1| PilT protein, N-terminal [Xylella fastidiosa ... 191 4e-47 ref|NP_298878.1| plasmid stabilization protein [Xylella fastidio... 191 5e-47 ref|ZP_08872790.1| PilT domain-containing protein [Verminephroba... 189 2e-46 >ref|YP_003775630.1| plasmid stabilization protein [Herbaspirillum seropedicae SmR1] gb|ADJ63722.1| plasmid stabilization protein [Herbaspirillum seropedicae SmR1] Length = 138 Score = 278 bits (711), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 137/138 (99%), Positives = 137/138 (99%) Query: 1 MIVLDTNVVSEAMKPAPDAAVQAWFNDQAPDTLYLTSITVAEIGFGIACLSAGRRQDLLA 60 MIVLDTNVVSEAMKPAPDAAVQAWFNDQAPDTLYLTSITVAEIGFGIACLSAGRRQDLLA Sbjct: 1 MIVLDTNVVSEAMKPAPDAAVQAWFNDQAPDTLYLTSITVAEIGFGIACLSAGRRQDLLA 60 Query: 61 RRFEGLLRMFKDRILPFDMDAARSHAELAAMARRAGRGFPTPDGYIAAIAASCGFLVASR 120 RRFEGLLRMFKDRILPFDMDAARSHAELAAMARRAGRGFPTPDGYIAAIAASCGFLVASR Sbjct: 61 RRFEGLLRMFKDRILPFDMDAARSHAELAAMARRAGRGFPTPDGYIAAIAASCGFLVASR 120 Query: 121 DVAPYLAAELTVINPWQA 138 DV PYLAAELTVINPWQA Sbjct: 121 DVTPYLAAELTVINPWQA 138 >ref|YP_973915.1| PilT domain-containing protein [Polaromonas naphthalenivorans CJ2] gb|ABM40173.1| PilT protein domain protein [Polaromonas naphthalenivorans CJ2] Length = 138 Score = 197 bits (501), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 96/138 (69%), Positives = 115/138 (83%) Query: 1 MIVLDTNVVSEAMKPAPDAAVQAWFNDQAPDTLYLTSITVAEIGFGIACLSAGRRQDLLA 60 MIVLDTNVVSEAMKP P AV+AW N QA TLYL+S+T+AE+ FGIA L AG+R+D+LA Sbjct: 1 MIVLDTNVVSEAMKPEPHPAVRAWLNAQAAPTLYLSSVTLAELLFGIAALPAGKRRDMLA 60 Query: 61 RRFEGLLRMFKDRILPFDMDAARSHAELAAMARRAGRGFPTPDGYIAAIAASCGFLVASR 120 + +GLL +F+DR+LPFD DAAR +AELA MAR GRGFPTPDGYIAAIAAS GF+VASR Sbjct: 61 KALDGLLGLFRDRVLPFDTDAARRYAELAVMARTGGRGFPTPDGYIAAIAASRGFIVASR 120 Query: 121 DVAPYLAAELTVINPWQA 138 D AP+ AA + +INPW+A Sbjct: 121 DTAPFQAAGVPIINPWEA 138 >gb|EGY29145.1| putative nucleic acid-binding protein, contains PIN domain [Candidatus Regiella insecticola R5.15] Length = 138 Score = 197 bits (501), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 93/138 (67%), Positives = 116/138 (84%) Query: 1 MIVLDTNVVSEAMKPAPDAAVQAWFNDQAPDTLYLTSITVAEIGFGIACLSAGRRQDLLA 60 MIVLDTNVVSE+MKP P AV+AW NDQA +TLYL+S+T+AE+ FGI LS G+R+D+L Sbjct: 1 MIVLDTNVVSESMKPEPHPAVRAWLNDQAVETLYLSSVTLAELLFGIGILSTGKRKDMLE 60 Query: 61 RRFEGLLRMFKDRILPFDMDAARSHAELAAMARRAGRGFPTPDGYIAAIAASCGFLVASR 120 + +GL+ +FK R+LPFD DAA+ +A+LA A+ AGRGFPTPDGYIAAIAAS GF+VASR Sbjct: 61 QALDGLMGLFKARVLPFDTDAAQHYAKLAVTAKAAGRGFPTPDGYIAAIAASRGFIVASR 120 Query: 121 DVAPYLAAELTVINPWQA 138 D+APY AA +TVINPW+A Sbjct: 121 DMAPYEAASVTVINPWKA 138 >ref|ZP_06487388.1| plasmid stability protein, putative [Xanthomonas campestris pv. vasculorum NCPPB702] ref|ZP_06490190.1| plasmid stability protein, putative [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 139 Score = 197 bits (500), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 93/137 (67%), Positives = 113/137 (82%) Query: 1 MIVLDTNVVSEAMKPAPDAAVQAWFNDQAPDTLYLTSITVAEIGFGIACLSAGRRQDLLA 60 MIVLDTNVVSEAMKP PDAAV+AW NDQA +TLYL+S+T+AE+ FGI L AG+R+++L Sbjct: 1 MIVLDTNVVSEAMKPEPDAAVRAWLNDQAAETLYLSSVTLAELLFGIRALPAGKRKNMLD 60 Query: 61 RRFEGLLRMFKDRILPFDMDAARSHAELAAMARRAGRGFPTPDGYIAAIAASCGFLVASR 120 R LL +FKDR+LPFD DAAR +A+LA A+ GRGFPTPDGYIAA+AAS GF+VASR Sbjct: 61 RALTELLELFKDRVLPFDTDAARHYADLAVTAKNGGRGFPTPDGYIAAVAASRGFIVASR 120 Query: 121 DVAPYLAAELTVINPWQ 137 D +PY AA + VINPW+ Sbjct: 121 DTSPYEAAGVNVINPWE 137 >ref|YP_002219894.1| PilT protein domain-containing protein [Acidithiobacillus ferrooxidans ATCC 53993] ref|YP_002426198.1| plasmid stability protein, putative [Acidithiobacillus ferrooxidans ATCC 23270] gb|ACH83687.1| PilT protein domain protein [Acidithiobacillus ferrooxidans ATCC 53993] gb|ACK78198.1| plasmid stability protein, putative [Acidithiobacillus ferrooxidans ATCC 23270] gb|EGQ61802.1| plasmid stability protein, putative [Acidithiobacillus sp. GGI-221] Length = 139 Score = 193 bits (490), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 92/137 (67%), Positives = 113/137 (82%) Query: 1 MIVLDTNVVSEAMKPAPDAAVQAWFNDQAPDTLYLTSITVAEIGFGIACLSAGRRQDLLA 60 MIVLDTNVVSEAMKP PDAAV+AW N+QA +TLYL+S+T+AE+ FGI L AG+ +++L Sbjct: 1 MIVLDTNVVSEAMKPEPDAAVRAWLNEQAAETLYLSSVTLAELLFGIRALPAGKCKNMLD 60 Query: 61 RRFEGLLRMFKDRILPFDMDAARSHAELAAMARRAGRGFPTPDGYIAAIAASCGFLVASR 120 R LL +FKDR+LPFD DAAR +A+LA A+ GRGFPTPDGYIAA+AAS GF+VASR Sbjct: 61 RALTELLELFKDRVLPFDTDAARHYADLAVTAKNGGRGFPTPDGYIAAVAASRGFIVASR 120 Query: 121 DVAPYLAAELTVINPWQ 137 D +PY AA +TVINPW+ Sbjct: 121 DTSPYEAAGVTVINPWK 137 >gb|EFW82856.1| PilT domain-containing protein [Pseudomonas syringae pv. glycinea str. race 4] gb|EGH16768.1| PilT domain-containing protein [Pseudomonas syringae pv. glycinea str. race 4] Length = 138 Score = 192 bits (489), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 91/137 (66%), Positives = 114/137 (83%) Query: 1 MIVLDTNVVSEAMKPAPDAAVQAWFNDQAPDTLYLTSITVAEIGFGIACLSAGRRQDLLA 60 MIVLDTNVVSEAMKP AV+AW NDQA +TLYL+S+T+AE+ FGI L AG+R+D+LA Sbjct: 1 MIVLDTNVVSEAMKPESHLAVRAWLNDQAAETLYLSSVTLAELLFGIGALPAGKRKDMLA 60 Query: 61 RRFEGLLRMFKDRILPFDMDAARSHAELAAMARRAGRGFPTPDGYIAAIAASCGFLVASR 120 + +GL+ +F+DR+LPFD+DAAR +A+LA A+ GRGFPTPDGYIAAIAAS GF+VASR Sbjct: 61 QALDGLMGLFRDRVLPFDIDAARRYADLAVTAKTCGRGFPTPDGYIAAIAASRGFIVASR 120 Query: 121 DVAPYLAAELTVINPWQ 137 D APY A ++VINPW+ Sbjct: 121 DTAPYEAVGVSVINPWE 137 >ref|YP_003811087.1| Predicted nucleic acid-binding protein, contains PIN domain [gamma proteobacterium HdN1] emb|CBL45442.1| Predicted nucleic acid-binding protein, contains PIN domain [gamma proteobacterium HdN1] Length = 142 Score = 192 bits (488), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 90/136 (66%), Positives = 113/136 (83%) Query: 1 MIVLDTNVVSEAMKPAPDAAVQAWFNDQAPDTLYLTSITVAEIGFGIACLSAGRRQDLLA 60 MIVLDTNVVSEAMKP P AV+AW NDQ +TLYL+S+T+AE+ FGIA L AG+R+++LA Sbjct: 1 MIVLDTNVVSEAMKPEPHKAVRAWLNDQVAETLYLSSVTLAELLFGIAALPAGKRKNMLA 60 Query: 61 RRFEGLLRMFKDRILPFDMDAARSHAELAAMARRAGRGFPTPDGYIAAIAASCGFLVASR 120 + +GL +FKDR+LPFD DAAR +AELA +A+ +GRGFPTPDGYIAAIAAS F+VA+R Sbjct: 61 QSLDGLTGLFKDRVLPFDTDAARHYAELAVIAKTSGRGFPTPDGYIAAIAASRDFIVATR 120 Query: 121 DVAPYLAAELTVINPW 136 D P+ AA ++VINPW Sbjct: 121 DTTPFEAAGVSVINPW 136 >ref|ZP_00652964.1| PilT protein, N-terminal [Xylella fastidiosa Dixon] ref|ZP_00681244.1| PilT protein, N-terminal [Xylella fastidiosa Ann-1] ref|YP_001776775.1| plasmid stabilization protein [Xylella fastidiosa M12] gb|EAO12252.1| PilT protein, N-terminal [Xylella fastidiosa Dixon] gb|EAO33258.1| PilT protein, N-terminal [Xylella fastidiosa Ann-1] gb|ACA13145.1| plasmid stabilization protein [Xylella fastidiosa M12] Length = 142 Score = 191 bits (484), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 89/137 (64%), Positives = 110/137 (80%) Query: 1 MIVLDTNVVSEAMKPAPDAAVQAWFNDQAPDTLYLTSITVAEIGFGIACLSAGRRQDLLA 60 MIVLDTNVVSEAMKP PDAAV+ W N+Q TLYL+S+T++E+ FGIA L +R+D+LA Sbjct: 1 MIVLDTNVVSEAMKPEPDAAVRTWLNEQMSVTLYLSSVTLSELLFGIAVLPTSKRKDMLA 60 Query: 61 RRFEGLLRMFKDRILPFDMDAARSHAELAAMARRAGRGFPTPDGYIAAIAASCGFLVASR 120 R +GLL +F +R+LPFD DAAR +AELA AR GRGFPTPDGYIAAIAAS G++VASR Sbjct: 61 RTLDGLLDLFNERVLPFDTDAARHYAELAVKARNNGRGFPTPDGYIAAIAASRGYIVASR 120 Query: 121 DVAPYLAAELTVINPWQ 137 D + Y ++ + VINPWQ Sbjct: 121 DTSAYESSGVQVINPWQ 137 >ref|NP_298878.1| plasmid stabilization protein [Xylella fastidiosa 9a5c] gb|AAF84398.1|AE003987_2 plasmid stabilization protein [Xylella fastidiosa 9a5c] Length = 142 Score = 191 bits (484), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 88/137 (64%), Positives = 111/137 (81%) Query: 1 MIVLDTNVVSEAMKPAPDAAVQAWFNDQAPDTLYLTSITVAEIGFGIACLSAGRRQDLLA 60 MIVLDTNVVSEAMKP PDAAV+ W N+Q TLYL+S+T++E+ FGIA L +R+D+LA Sbjct: 1 MIVLDTNVVSEAMKPEPDAAVRTWLNEQMSVTLYLSSVTLSELLFGIAVLPTSKRKDMLA 60 Query: 61 RRFEGLLRMFKDRILPFDMDAARSHAELAAMARRAGRGFPTPDGYIAAIAASCGFLVASR 120 R +GLL +F +R+LPF+ DAAR +AELA AR +GRGFPTPDGYIAAIAAS G++VASR Sbjct: 61 RTLDGLLDLFNERVLPFNTDAARHYAELAVKARNSGRGFPTPDGYIAAIAASRGYIVASR 120 Query: 121 DVAPYLAAELTVINPWQ 137 D + Y ++ + VINPWQ Sbjct: 121 DTSAYESSGVQVINPWQ 137 >ref|ZP_08872790.1| PilT domain-containing protein [Verminephrobacter sp. At4] Length = 138 Score = 189 bits (479), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 89/137 (64%), Positives = 111/137 (81%) Query: 1 MIVLDTNVVSEAMKPAPDAAVQAWFNDQAPDTLYLTSITVAEIGFGIACLSAGRRQDLLA 60 MIVLDTNVVSEAMKP P AV+ W N+QA +TLYL+S+T+AE+ FGI L A +R+D+L Sbjct: 1 MIVLDTNVVSEAMKPKPHTAVRTWLNNQAAETLYLSSVTLAELLFGIVSLPADKRKDMLT 60 Query: 61 RRFEGLLRMFKDRILPFDMDAARSHAELAAMARRAGRGFPTPDGYIAAIAASCGFLVASR 120 + + L+ +F+DR+LPFD DAAR +AELA A+ GRGFPTPDGYIAAIAAS GF+VASR Sbjct: 61 QALDALMGLFRDRVLPFDADAARRYAELAMTAKTRGRGFPTPDGYIAAIAASRGFIVASR 120 Query: 121 DVAPYLAAELTVINPWQ 137 D APY AA ++VINPW+ Sbjct: 121 DTAPYEAAGVSVINPWE 137