BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0059.p (337 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775634.1| LysR family transcription regulator protein ... 662 0.0 ref|YP_004753978.1| LysR family transcriptional regulator [Colli... 449 e-124 ref|YP_004156116.1| LysR family transcriptional regulator [Vario... 293 2e-77 ref|YP_588007.1| LysR family transcriptional regulator [Cupriavi... 286 2e-75 ref|YP_299586.1| regulatory protein LysR [Ralstonia eutropha JMP... 286 2e-75 ref|YP_004680281.1| LysR family transcriptional regulator [Cupri... 284 1e-74 ref|YP_728234.1| LysR family transcriptional regulator [Ralstoni... 284 2e-74 ref|NP_885083.1| LysR family transcriptional regulator [Bordetel... 283 2e-74 ref|NP_889743.1| LysR family transcriptional regulator [Bordetel... 283 3e-74 ref|NP_880525.1| LysR family transcriptional regulator [Bordetel... 282 5e-74 >ref|YP_003775634.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ63726.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 335 Score = 662 bits (1707), Expect = 0.0, Method: Compositional matrix adjust. Identities = 331/337 (98%), Positives = 331/337 (98%), Gaps = 2/337 (0%) Query: 1 MQTNISTRLLQAFLALADCRHFGHAAQRCHVSQSAFSAMIQKIEAAAGARLFERDTRNVT 60 MQTNISTRLLQAFLALADCRHFGHAAQRCHVSQSAFSAMIQKIEAAAGARLFERDTRNVT Sbjct: 1 MQTNISTRLLQAFLALADCRHFGHAAQRCHVSQSAFSAMIQKIEAAAGARLFERDTRNVT 60 Query: 61 LTPEGELFVQVARQLVSDIEAAFSDMSDYVARRKGRVAIAALPSLAAGWLPPVLADYRQR 120 LTPEGELFVQVARQLVSDIEAAFSDMSDYVARRKGRVAIAALPSLAAGWLPPVLADYRQR Sbjct: 61 LTPEGELFVQVARQLVSDIEAAFSDMSDYVARRKGRVAIAALPSLAAGWLPPVLADYRQR 120 Query: 121 YPGVTVELFDAISDQCLDLLRHGKVDIALTAPGPNLLEFDTRPLCSDPFYLVCRKDHKLA 180 YPGVTVELFDAISDQCLDLLRHGKVDIALTAPGPNLLEFDTRPLCSDPFYLVCRKDHKLA Sbjct: 121 YPGVTVELFDAISDQCLDLLRHGKVDIALTAPGPNLLEFDTRPLCSDPFYLVCRKDHKLA 180 Query: 181 SKRRIKVPQLAGCEMIHLARSTSVRQHLDAVLRPGGVSHTGLEVEHLATVAALIESGLGV 240 SKRRIKVPQLAGCEMIHLARSTSVRQHLDAVLRPGGV HTGLEVEHLATVAALIESGLGV Sbjct: 181 SKRRIKVPQLAGCEMIHLARSTSVRQHLDAVLRPGGVIHTGLEVEHLATVAALIESGLGV 240 Query: 241 SVVPELTLFQFRLPNLVAIPLDAPELKRPLLIVTPKERSLSVAAQGLLELVEGKAKAETA 300 SVVPELTLFQFRLPNLVAIPLDAPELKRPLLIVTPKERSLSVAAQGLLELVEGKAKAE Sbjct: 241 SVVPELTLFQFRLPNLVAIPLDAPELKRPLLIVTPKERSLSVAAQGLLELVEGKAKAE-- 298 Query: 301 TETEAAVAGKRQESGRRASSPKTKEKGGGQGAGRGRS 337 TETEAAVAGKRQESGRRASSPKTKEK QGAGRGRS Sbjct: 299 TETEAAVAGKRQESGRRASSPKTKEKAPRQGAGRGRS 335 >ref|YP_004753978.1| LysR family transcriptional regulator [Collimonas fungivorans Ter331] gb|AEK63155.1| transcriptional regulator, LysR family [Collimonas fungivorans Ter331] Length = 305 Score = 449 bits (1155), Expect = e-124, Method: Compositional matrix adjust. Identities = 214/294 (72%), Positives = 255/294 (86%) Query: 1 MQTNISTRLLQAFLALADCRHFGHAAQRCHVSQSAFSAMIQKIEAAAGARLFERDTRNVT 60 M+ NISTR L AFLAL +C+HF HAA+RC +SQSAFS MIQK+E A GA+LFERDTRNVT Sbjct: 1 MKLNISTRSLHAFLALQECKHFTHAAERCFMSQSAFSVMIQKLEVAVGAKLFERDTRNVT 60 Query: 61 LTPEGELFVQVARQLVSDIEAAFSDMSDYVARRKGRVAIAALPSLAAGWLPPVLADYRQR 120 LT EGELF +VAR LVSDIE+AF+DMSDYVARRKGRVAIAALPSLAA LP V+A+Y++ Sbjct: 61 LTAEGELFAEVARSLVSDIESAFADMSDYVARRKGRVAIAALPSLAANGLPAVIAEYKRA 120 Query: 121 YPGVTVELFDAISDQCLDLLRHGKVDIALTAPGPNLLEFDTRPLCSDPFYLVCRKDHKLA 180 YPG+TV+LFDA+SDQCL +LR GKVDIALTAPG L+EFDT+ LCSDPFYLVCR+DH LA Sbjct: 121 YPGITVQLFDALSDQCLAMLRQGKVDIALTAPGSGLIEFDTKTLCSDPFYLVCRQDHALA 180 Query: 181 SKRRIKVPQLAGCEMIHLARSTSVRQHLDAVLRPGGVSHTGLEVEHLATVAALIESGLGV 240 KRRI++ L+GCE+IHLARSTSVRQH++ +LR V ++GLEVEHLATVA LIESGLGV Sbjct: 181 GKRRIRISDLSGCELIHLARSTSVRQHVELLLRGIPVMNSGLEVEHLATVAGLIESGLGV 240 Query: 241 SVVPELTLFQFRLPNLVAIPLDAPELKRPLLIVTPKERSLSVAAQGLLELVEGK 294 S+VPELTLFQFR +LV+IP+DA ++ RP+LIV KERSLS+AAQG+ EL+E + Sbjct: 241 SIVPELTLFQFRHMDLVSIPIDAHDIVRPILIVKKKERSLSIAAQGMSELIEKR 294 >ref|YP_004156116.1| LysR family transcriptional regulator [Variovorax paradoxus EPS] gb|ADU38005.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS] Length = 303 Score = 293 bits (751), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 160/295 (54%), Positives = 207/295 (70%), Gaps = 8/295 (2%) Query: 4 NISTRLLQAFLALADCRHFGHAAQRCHVSQSAFSAMIQKIEAAAGARLFERDTRNVTLTP 63 ++STR L+AFLALA+ R+F AAQ H+SQ AFSA+I+ +E A G RLF+RDTR+V LTP Sbjct: 6 DLSTRQLRAFLALAEHRNFTRAAQTSHLSQPAFSALIRTLEDAIGTRLFDRDTRSVQLTP 65 Query: 64 EGELFVQVARQLVSDIEAAFSDMSDYVARRKGRVAIAALPSLAAGWLPPVLADYRQRYPG 123 EG LF AR+L+ D+ +A D++D+V RRKGRV IAALPSLAAGWLP V A++ Q +PG Sbjct: 66 EGRLFESSARRLLDDMGSAMGDLADHVERRKGRVRIAALPSLAAGWLPTVFAEFMQAWPG 125 Query: 124 VTVELFDAISDQCLDLLRHGKVDIALTAPG----PNLLEFDTRPLCSDPFYLVCRKDHKL 179 + ++L DA+SD C+ L+R G+ D AL A G +LL R LC+D F+LVCR DH L Sbjct: 126 IRIDLDDALSDACVALVRSGQADFALAASGTAADSDLL---ARKLCTDRFHLVCRADHPL 182 Query: 180 ASKRRIKVPQLAGCEMIHLARSTSVRQHLDAVLRPGGVSHTGLEVEHLATVAALIESGLG 239 A + R+ V ++A I +AR++SVRQ LDA L P ++ EVEHLATV L+E+GLG Sbjct: 183 AHEARLTVKKIAPWPFIQMARNSSVRQALDAALHPLRLNAV-FEVEHLATVMGLVEAGLG 241 Query: 240 VSVVPELTLFQFRLPNLVAIPLDAPELKRPLLIVTPKERSLSVAAQGLLELVEGK 294 +SVVP LTLF FR LV PL P L R L +V +E SLSVAAQ L +LV + Sbjct: 242 ISVVPALTLFHFRRETLVTRPLPLPALTRTLYLVQRREGSLSVAAQTLHDLVVAR 296 >ref|YP_588007.1| LysR family transcriptional regulator [Cupriavidus metallidurans CH34] gb|ABF12738.1| transcriptional regulator, LysR family [Cupriavidus metallidurans CH34] Length = 299 Score = 286 bits (733), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 154/298 (51%), Positives = 203/298 (68%), Gaps = 3/298 (1%) Query: 1 MQTNISTRLLQAFLALADCRHFGHAAQRCHVSQSAFSAMIQKIEAAAGARLFERDTRNVT 60 M +N+S + L+AF+ALA R+F AAQ CH+SQSAFSA+IQ +E AG RLFER TR+V Sbjct: 1 MLSNLSVKHLRAFVALATHRNFTRAAQACHLSQSAFSALIQTLEEQAGCRLFERTTRHVD 60 Query: 61 LTPEGELFVQVARQLVSDIEAAFSDMSDYVARRKGRVAIAALPSLAAGWLPPVLADYRQR 120 L+ +G F ++AR+L+ D EAAF D+ D+ RRKGRVAIAALPSLA G LPP+LA + Q+ Sbjct: 61 LSTDGRRFEEMARRLLGDFEAAFDDLRDHAERRKGRVAIAALPSLAGGDLPPLLASFHQQ 120 Query: 121 YPGVTVELFDAISDQCLDLLRHGKVDIALTAPGP-NLLEFDTRPLCSDPFYLVCRKDHKL 179 YPG+ +EL D ++D C++ +R G+ D AL AP P + L D F+LVC DH L Sbjct: 121 YPGIALELHDQLADGCIEFVRRGQADFAL-APAPAQDADLRVEALVRDSFHLVCPADHPL 179 Query: 180 ASKRRIKVPQLAGCEMIHLARSTSVRQHLDAVLRPGGVSHTGLEVEHLATVAALIESGLG 239 A KRR+ LAG I L+R++SVRQHLDA L P ++ +EVEHLATVAAL+E+GLG Sbjct: 180 AGKRRVTPQALAGLPFIQLSRTSSVRQHLDAALHPLKLNGV-MEVEHLATVAALVEAGLG 238 Query: 240 VSVVPELTLFQFRLPNLVAIPLDAPELKRPLLIVTPKERSLSVAAQGLLELVEGKAKA 297 VSVVP L LFQFR L P+ P L R + +V K+R S AA +L+ + ++ Sbjct: 239 VSVVPALALFQFRREGLAIRPMQMPTLVRDICVVRLKDRGDSAAATAMLDCLRAHYRS 296 >ref|YP_299586.1| regulatory protein LysR [Ralstonia eutropha JMP134] gb|AAZ64742.1| regulatory protein, LysR:LysR, substrate-binding protein [Ralstonia eutropha JMP134] Length = 297 Score = 286 bits (733), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 155/288 (53%), Positives = 205/288 (71%), Gaps = 5/288 (1%) Query: 4 NISTRLLQAFLALADCRHFGHAAQRCHVSQSAFSAMIQKIEAAAGARLFERDTRNVTLTP 63 N+S + L+AF+ALA R+F AA+ CH+SQSAFSA++Q +E AG+RLFER TR+V L+ Sbjct: 2 NLSVKHLRAFVALATHRNFTRAARACHLSQSAFSALVQTLEEQAGSRLFERTTRHVELSA 61 Query: 64 EGELFVQVARQLVSDIEAAFSDMSDYVARRKGRVAIAALPSLAAGWLPPVLADYRQRYPG 123 +G F + AR+L+ D EAAF D+ + RRKGRV+IAALPS+A G LPP+LA +RQRYPG Sbjct: 62 DGMRFEETARRLLGDFEAAFEDLRAHAERRKGRVSIAALPSIAGGDLPPLLAAFRQRYPG 121 Query: 124 VTVELFDAISDQCLDLLRHGKVDIALTAPGPNLLEFDTR--PLCSDPFYLVCRKDHKLAS 181 + +ELFD ++D C+DL+R G+ D AL AP P + + D R PL D F+LVC H LA Sbjct: 122 IALELFDQLADGCIDLVRRGRADFAL-APAP-VQDDDLRVEPLVHDTFHLVCPTTHVLAR 179 Query: 182 KRRIKVPQLAGCEMIHLARSTSVRQHLDAVLRPGGVSHTGLEVEHLATVAALIESGLGVS 241 KRRI LAG IHL+R++SVRQHLDA L P +S + +EVEHLATVAAL+++GLGVS Sbjct: 180 KRRITPQMLAGQPFIHLSRTSSVRQHLDAALHPLKLS-SVMEVEHLATVAALVQAGLGVS 238 Query: 242 VVPELTLFQFRLPNLVAIPLDAPELKRPLLIVTPKERSLSVAAQGLLE 289 VVP L LFQF+ L PL P L R + +V ++R S AA +++ Sbjct: 239 VVPSLALFQFQRDGLAVRPLQMPSLVRDICLVRLRDRGDSAAAAAMID 286 >ref|YP_004680281.1| LysR family transcriptional regulator [Cupriavidus necator N-1] gb|AEI79049.1| transcriptional regulator LysR family [Cupriavidus necator N-1] Length = 301 Score = 284 bits (727), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 153/291 (52%), Positives = 201/291 (69%), Gaps = 3/291 (1%) Query: 4 NISTRLLQAFLALADCRHFGHAAQRCHVSQSAFSAMIQKIEAAAGARLFERDTRNVTLTP 63 N+S + L+AF+ALA R+F AA+ CH+SQSAFSA++Q +E AG+RLFER TR+V L+ Sbjct: 2 NLSVKHLRAFVALATYRNFTRAARACHLSQSAFSALVQTLEEQAGSRLFERTTRHVELSS 61 Query: 64 EGELFVQVARQLVSDIEAAFSDMSDYVARRKGRVAIAALPSLAAGWLPPVLADYRQRYPG 123 +G F Q AR+L++D E AF D+ + RRKGRV+IAALPSLAAG LPP+LA +R YPG Sbjct: 62 DGVRFEQTARRLLADFETAFEDLRAHAERRKGRVSIAALPSLAAGDLPPLLAQFRALYPG 121 Query: 124 VTVELFDAISDQCLDLLRHGKVDIALTAPGP-NLLEFDTRPLCSDPFYLVCRKDHKLASK 182 + +ELFD ++D C++L+R G+ D AL AP P + PL D F+LVC DH LA K Sbjct: 122 IALELFDQLADGCIELVRQGRADFAL-APAPAQDDDLRVEPLVRDTFHLVCPADHPLARK 180 Query: 183 RRIKVPQLAGCEMIHLARSTSVRQHLDAVLRPGGVSHTGLEVEHLATVAALIESGLGVSV 242 RRI LAG I L+R+TSVRQHLDA L P ++ +EVEHLATVAAL+++GLGVS Sbjct: 181 RRITPEMLAGLPFIQLSRTTSVRQHLDAALHPLRLTSV-MEVEHLATVAALVQAGLGVSA 239 Query: 243 VPELTLFQFRLPNLVAIPLDAPELKRPLLIVTPKERSLSVAAQGLLELVEG 293 VP L LFQFR L PL P L R + +V K+R S AA +++ ++ Sbjct: 240 VPSLALFQFRREGLAIRPLQLPSLVRDICLVRLKDRGDSAAAAAMIDCLQA 290 >ref|YP_728234.1| LysR family transcriptional regulator [Ralstonia eutropha H16] emb|CAJ94869.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16] Length = 301 Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 153/291 (52%), Positives = 200/291 (68%), Gaps = 3/291 (1%) Query: 4 NISTRLLQAFLALADCRHFGHAAQRCHVSQSAFSAMIQKIEAAAGARLFERDTRNVTLTP 63 N+S + L+AF+ALA R+F AA+ CH+SQSAFSA++Q +E AG+RLFER TR+V L+ Sbjct: 2 NLSVKHLRAFVALATYRNFTRAARACHLSQSAFSALVQTLEEQAGSRLFERTTRHVELSS 61 Query: 64 EGELFVQVARQLVSDIEAAFSDMSDYVARRKGRVAIAALPSLAAGWLPPVLADYRQRYPG 123 +G F Q AR+L++D E AF D+ + RRKGRV+IAALPSLA G LPP+LA +R YPG Sbjct: 62 DGVRFEQTARRLLADFETAFEDLRAHAERRKGRVSIAALPSLAGGDLPPLLAQFRALYPG 121 Query: 124 VTVELFDAISDQCLDLLRHGKVDIALTAPGPNLLE-FDTRPLCSDPFYLVCRKDHKLASK 182 + +ELFD ++D C++L+R G+ D AL AP P E PL D F+LVC DH LA K Sbjct: 122 IALELFDQLADGCIELVRQGRADFAL-APAPAQDEDLRVEPLVRDTFHLVCPADHALARK 180 Query: 183 RRIKVPQLAGCEMIHLARSTSVRQHLDAVLRPGGVSHTGLEVEHLATVAALIESGLGVSV 242 RRI LAG I L+R+TSVRQHLDA L P ++ +EVEHLATVAAL+++GLGVS Sbjct: 181 RRITPQMLAGLPFIQLSRTTSVRQHLDAALHPLRLTSV-MEVEHLATVAALVQAGLGVSA 239 Query: 243 VPELTLFQFRLPNLVAIPLDAPELKRPLLIVTPKERSLSVAAQGLLELVEG 293 VP L LFQFR L PL P L R + +V K+R S AA +++ ++ Sbjct: 240 VPSLALFQFRREGLAIRPLQLPSLVRDICLVRLKDRGDSAAAAAMIDCLQA 290 >ref|NP_885083.1| LysR family transcriptional regulator [Bordetella parapertussis 12822] emb|CAE38178.1| probable LysR-family transcriptional regulator [Bordetella parapertussis] Length = 316 Score = 283 bits (725), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 156/320 (48%), Positives = 210/320 (65%), Gaps = 12/320 (3%) Query: 2 QTNISTRLLQAFLALADCRHFGHAAQRCHVSQSAFSAMIQKIEAAAGARLFERDTRNVTL 61 Q ++STR L+AF+ LAD RHF AAQ CH+SQ AFSA+IQ +EA +LF+R TR V L Sbjct: 4 QADLSTRQLRAFVMLADLRHFTKAAQACHLSQPAFSALIQSLEATLAMQLFDRSTRRVVL 63 Query: 62 TPEGELFVQVARQLVSDIEAAFSDMSDYVARRKGRVAIAALPSLAAGWLPPVLADYRQRY 121 T EGELF +AR+L++D+ A + ++ +V R+GRV +AALPSLAAGWLP VL ++ + Sbjct: 64 TQEGELFEPLARRLLADLGHAMTHIASFVELRRGRVHVAALPSLAAGWLPKVLHEFHAEH 123 Query: 122 PGVTVELFDAISDQCLDLLRHGKVDIALTAPG-----PNLLEFDTRPLCSDPFYLVCRKD 176 P + + L D +SD+C++L+R G+ D AL + G P +L R LCSD F+L+CRKD Sbjct: 124 PDIELMLSDVLSDECIELVRSGQADFALASRGIRASDPAVLH--ARELCSDTFHLICRKD 181 Query: 177 HKLASKRRIKVPQLAGCEMIHLARSTSVRQHLDAVLRPGGVSHTGLEVEHLATVAALIES 236 H LA + R+ + LA IHL R++SVRQ ++A LRP V+ T LEV LATVA +IE+ Sbjct: 182 HPLAREPRLTLKHLAPWPFIHLTRNSSVRQTVEAALRP-QVAKTILEVAQLATVAGMIEA 240 Query: 237 GLGVSVVPELTLFQFRLPNLVAIPLDAPELKRPLLIVTPKERSLSVAAQGLLELVEGKAK 296 GLG+SVVP TL+QF P L+ P+ P L R + IV +E LS+AAQ L +LV K Sbjct: 241 GLGISVVPTFTLYQFERPGLLIRPISLPGLTRQIYIVRRQEERLSIAAQALYDLVVAK-- 298 Query: 297 AETATETEAAVAGKRQESGR 316 T A +R E GR Sbjct: 299 --LGTPAAAKPRRRRTEKGR 316 >ref|NP_889743.1| LysR family transcriptional regulator [Bordetella bronchiseptica RB50] emb|CAE33699.1| probable LysR-family transcriptional regulator [Bordetella bronchiseptica RB50] Length = 316 Score = 283 bits (724), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 155/320 (48%), Positives = 210/320 (65%), Gaps = 12/320 (3%) Query: 2 QTNISTRLLQAFLALADCRHFGHAAQRCHVSQSAFSAMIQKIEAAAGARLFERDTRNVTL 61 Q ++STR L+AF+ LAD RHF AAQ CH+SQ AFSA+IQ +EA +LF+R TR V L Sbjct: 4 QADLSTRQLRAFVMLADLRHFTKAAQACHLSQPAFSALIQSLEATLAMQLFDRSTRRVVL 63 Query: 62 TPEGELFVQVARQLVSDIEAAFSDMSDYVARRKGRVAIAALPSLAAGWLPPVLADYRQRY 121 T EGELF +AR+L++D+ A + ++ +V R+GRV +AALPSLAAGWLP +L ++ + Sbjct: 64 TQEGELFEPLARRLLADLGHAMTHIASFVELRRGRVHVAALPSLAAGWLPKILHEFHAEH 123 Query: 122 PGVTVELFDAISDQCLDLLRHGKVDIALTAPG-----PNLLEFDTRPLCSDPFYLVCRKD 176 P + + L D +SD+C++L+R G+ D AL + G P +L R LCSD F+L+CRKD Sbjct: 124 PDIELMLSDVLSDECIELVRSGQADFALASRGIRASDPAVLH--ARELCSDTFHLICRKD 181 Query: 177 HKLASKRRIKVPQLAGCEMIHLARSTSVRQHLDAVLRPGGVSHTGLEVEHLATVAALIES 236 H LA + R+ + LA IHL R++SVRQ ++A LRP V+ T LEV LATVA +IE+ Sbjct: 182 HPLAREPRLTLKHLAPWPFIHLTRNSSVRQTVEAALRP-QVAKTILEVAQLATVAGMIEA 240 Query: 237 GLGVSVVPELTLFQFRLPNLVAIPLDAPELKRPLLIVTPKERSLSVAAQGLLELVEGKAK 296 GLG+SVVP TL+QF P L+ P+ P L R + IV +E LS+AAQ L +LV K Sbjct: 241 GLGISVVPTFTLYQFERPGLLIRPISLPGLTRQIYIVRRQEERLSIAAQALYDLVVAK-- 298 Query: 297 AETATETEAAVAGKRQESGR 316 T A +R E GR Sbjct: 299 --LGTPAAAKPRRRRTEKGR 316 >ref|NP_880525.1| LysR family transcriptional regulator [Bordetella pertussis Tohama I] emb|CAE42106.1| probable LysR-family transcriptional regulator [Bordetella pertussis Tohama I] gb|AEE67141.1| LysR family transcriptional regulator [Bordetella pertussis CS] Length = 318 Score = 282 bits (722), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 150/298 (50%), Positives = 203/298 (68%), Gaps = 8/298 (2%) Query: 2 QTNISTRLLQAFLALADCRHFGHAAQRCHVSQSAFSAMIQKIEAAAGARLFERDTRNVTL 61 Q ++STR L+AF+ LAD RHF AAQ CH+SQ AFSA+IQ +EA +LF+R TR V L Sbjct: 4 QADLSTRQLRAFVMLADLRHFTKAAQACHLSQPAFSALIQSLEATLAMQLFDRSTRRVVL 63 Query: 62 TPEGELFVQVARQLVSDIEAAFSDMSDYVARRKGRVAIAALPSLAAGWLPPVLADYRQRY 121 T EGELF +AR+L++D+ A + ++ +V R+GRV +AALPSLAAGWLP VL ++ + Sbjct: 64 TQEGELFEPLARRLLADLGHAMTHIASFVELRRGRVHVAALPSLAAGWLPKVLHEFHAEH 123 Query: 122 PGVTVELFDAISDQCLDLLRHGKVDIALTAPG-----PNLLEFDTRPLCSDPFYLVCRKD 176 P + + L D +SD+C++L+R G+ D AL + G P +L R LCSD F+L+CRKD Sbjct: 124 PDIELMLSDVLSDECIELVRSGQADFALASRGIRASDPAVLH--ARELCSDTFHLICRKD 181 Query: 177 HKLASKRRIKVPQLAGCEMIHLARSTSVRQHLDAVLRPGGVSHTGLEVEHLATVAALIES 236 H LA + R+ + LA IHL R++SVRQ ++A LRP V+ T LEV LATVA +IE+ Sbjct: 182 HPLAREPRLTLKHLAPWPFIHLTRNSSVRQTVEAALRP-QVAKTILEVAQLATVAGMIEA 240 Query: 237 GLGVSVVPELTLFQFRLPNLVAIPLDAPELKRPLLIVTPKERSLSVAAQGLLELVEGK 294 GLG+SVVP TL+QF P L+ P+ P L R + IV +E LS+AAQ L +LV K Sbjct: 241 GLGISVVPTFTLYQFERPGLLIRPISLPGLTRQIYIVRRQEERLSIAAQALYDLVVAK 298