BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0044.p (442 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775647.1| D-amino acid dehydrogenase small subunit [He... 860 0.0 ref|YP_004753060.1| D-amino acid dehydrogenase small subunit [Co... 324 2e-86 ref|ZP_08273101.1| D-amino acid dehydrogenase small subunit [Oxa... 308 1e-81 ref|YP_001100025.1| putative D-amino acid dehydrogenase small su... 291 1e-76 ref|YP_001353230.1| D-amino-acid dehydrogenase [Janthinobacteriu... 285 8e-75 ref|YP_002005459.1| D-amino acid dehydrogenase subunit [Cupriavi... 265 9e-69 ref|YP_726005.1| D-amino-acid dehydrogenase [Ralstonia eutropha ... 261 2e-67 ref|YP_004685354.1| D-amino acid dehydrogenase small subunit [Cu... 259 8e-67 ref|YP_004229702.1| D-amino-acid dehydrogenase [Burkholderia sp.... 248 2e-63 ref|YP_584025.1| D-amino acid dehydrogenase [Cupriavidus metalli... 248 2e-63 >ref|YP_003775647.1| D-amino acid dehydrogenase small subunit [Herbaspirillum seropedicae SmR1] gb|ADJ63739.1| D-amino acid dehydrogenase, small subunit, protein [Herbaspirillum seropedicae SmR1] Length = 423 Score = 860 bits (2223), Expect = 0.0, Method: Compositional matrix adjust. Identities = 421/423 (99%), Positives = 422/423 (99%) Query: 20 VNSTHRQIAVIGGGLSGICSAYFLATKGYEVAVIERRAHVAEEATFGDSGLLAPGTAMPL 79 +NSTHRQIAVIGGGLSGICSAYFLATKGYEVAVIERRAHVAEEATFGDSGLLAPGTAMPL Sbjct: 1 MNSTHRQIAVIGGGLSGICSAYFLATKGYEVAVIERRAHVAEEATFGDSGLLAPGTAMPL 60 Query: 80 TLPGALATFACRFQDEPRVLLASGADFGRRRWMRATRAAQQHHFAQHKLILSRLSAYGQD 139 TLPGALATFACRFQDEPRVLLASGADFGRRRWMRATRAAQQHHFAQHKLILSRLSAYGQD Sbjct: 61 TLPGALATFACRFQDEPRVLLASGADFGRRRWMRATRAAQQHHFAQHKLILSRLSAYGQD 120 Query: 140 LTQQLQAHYNMEHENSAGVFHLFRQSAEAARLPALQEAASQCEYKQLTLDAAGIRALEPA 199 LTQQLQAHYNMEHENSAGVFHLFRQSAEAARLPALQEAASQCEYKQLTLDAAGIRALEPA Sbjct: 121 LTQQLQAHYNMEHENSAGVFHLFRQSAEAARLPALQEAASQCEYKQLTLDAAGIRALEPA 180 Query: 200 FSSEAALAGALYYPDDIAGNSVLFAKQMRNAAQALGVSFHFNSTVSSIRSEFGGRVTLEV 259 FSSEAALAGALYYPDDIAGNSVLFAKQMRNAAQALGVSFHFNSTVSSIRSEFGGRVTLEV Sbjct: 181 FSSEAALAGALYYPDDIAGNSVLFAKQMRNAAQALGVSFHFNSTVSSIRSEFGGRVTLEV 240 Query: 260 QSPHLASHLTMDAVVVAAGMASAALLQPLDTSLPLRALQSYSALVPVKNPDDAPTMALYD 319 QSPHLASHLTMDAVVVAAGMASAALLQPLDTSLPLRALQSYSALVPVKNPDDAPTMALYD Sbjct: 241 QSPHLASHLTMDAVVVAAGMASAALLQPLDTSLPLRALQSYSALVPVKNPDDAPTMALYD 300 Query: 320 DSYKVAMTRLGSRIRISGLLGFVPASQTLPPKALRNLLKIAGDYYPNAANYNQAHFWSNS 379 DSYKVAMTRLGSRIRISGLLGFVPASQTLPPKALRNLLKIAGDYYPNAANYNQAHFWSNS Sbjct: 301 DSYKVAMTRLGSRIRISGLLGFVPASQTLPPKALRNLLKIAGDYYPNAANYNQAHFWSNS 360 Query: 380 IAMMPTGLPVVGPTRQGNIFVNVGHGVTGWAASVGSARLLSDMMAGEETEIPTAGLLPRD 439 IAMMPTGLPVVGPTRQGNIFVNVGHGVTGWAASVGSARLLSDMMAGEETEI TAGLLPRD Sbjct: 361 IAMMPTGLPVVGPTRQGNIFVNVGHGVTGWAASVGSARLLSDMMAGEETEIATAGLLPRD 420 Query: 440 VLG 442 VLG Sbjct: 421 VLG 423 >ref|YP_004753060.1| D-amino acid dehydrogenase small subunit [Collimonas fungivorans Ter331] gb|AEK62237.1| D-amino acid dehydrogenase small subunit [Collimonas fungivorans Ter331] Length = 425 Score = 324 bits (831), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 183/417 (43%), Positives = 257/417 (61%), Gaps = 7/417 (1%) Query: 21 NSTHRQIAVIGGGLSGICSAYFLATKGYEVAVIERRAHVAEEATFGDSGLLAPGTAMPLT 80 T +QI VIGGG+ G+CSAYFLA G++VAV+E+R++VAE++T G+SG+L+ G A+P Sbjct: 8 QQTQKQIVVIGGGVMGVCSAYFLAEAGHQVAVVEQRSNVAEQSTLGNSGILSAGAALPWA 67 Query: 81 LPGAL-ATFACRFQDEPRVLLASGADFGRRRWMRATRAAQQ-HHFAQHKLILSRLSAYGQ 138 +PG A F E +L + D RWMR A + F H + RL++Y Q Sbjct: 68 VPGMRRKILAGMFNQEAPNVLNARFDPTLWRWMRRWMAESEIQRFRSHTHQMQRLASYSQ 127 Query: 139 DLTQQLQAHYNMEHENSAGVFHLFRQSAEAARLPALQEAASQCEYKQLTLDAAGIRALEP 198 DL +Q+Q H+ ++ E S G+ LFR AE A L +E ++C LD AG R EP Sbjct: 128 DLLEQIQQHFQLDFEQSPGLLRLFRSEAELAALAPTRELLTECGVAHQLLDEAGARLQEP 187 Query: 199 AFSSEAALAGALYYPDDIAGNSVLFAKQMRNAAQALGVSFHFNSTVSSIRSEFGGRVTLE 258 A +S LAG LY+PD +GN LF KQ++ Q LGV FHF+S VS+I + G +V L Sbjct: 188 ALASAGKLAGGLYFPDLGSGNCTLFTKQLKAILQGLGVQFHFDSKVSAIVPQ-GAQVALH 246 Query: 259 VQSPHLASHLTMDAVVVAAGMASAALLQPLDTSLPLRALQSYSALVPVKNPDDAPTMALY 318 + + L DAVV A G ASA LL+PL LPL A+++Y+A VKN + AP MA+ Sbjct: 247 ID----GNVLLADAVVCATGGASAQLLKPLGLRLPLHAIKTYTATATVKNYEVAPRMAML 302 Query: 319 DDSYKVAMTRLGSRIRISGLLGFVPASQTLPPKALRNLLKIAGDYYPNAANYNQAHFWSN 378 D SY+V M R+G RIR++G+ F T KA+R LLK+A D++P+AAN+N A FW Sbjct: 303 DGSYQVTMARIGDRIRLAGIAEFGAQDMTFDDKAMRTLLKVAHDWFPDAANFNSASFWCG 362 Query: 379 SIAMMPTGLPVVGPTRQGNIFVNVGHGVTGWAASVGSARLLSDMMAGEETEIPTAGL 435 M+ +P+VG T N+FVN+GHG +GW+ ++G+A++L+D + G EI GL Sbjct: 363 HTPMLADEVPLVGHTGASNVFVNIGHGGSGWSMALGAAKVLADQVDGRAPEIDLDGL 419 >ref|ZP_08273101.1| D-amino acid dehydrogenase small subunit [Oxalobacteraceae bacterium IMCC9480] gb|EGF33446.1| D-amino acid dehydrogenase small subunit [Oxalobacteraceae bacterium IMCC9480] Length = 414 Score = 308 bits (789), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 167/412 (40%), Positives = 242/412 (58%), Gaps = 7/412 (1%) Query: 26 QIAVIGGGLSGICSAYFLATKGYEVAVIERRAHVAEEATFGDSGLLAPGTAMPLTLPGAL 85 Q+AVIGGG+ G+ +AYFLA G+EVA+IERR++VAEEA+FG+SGL+AP + P +PG Sbjct: 2 QVAVIGGGVLGVSTAYFLAAAGHEVALIERRSNVAEEASFGNSGLVAPALSAPWAMPGMP 61 Query: 86 AT-FACRFQDEPRVLLASGADFGRRRWMRA-TRAAQQHHFAQHKLILSRLSAYGQDLTQQ 143 FA F+ E ++L D RW R F +KL L R+ Y +D+ +Q Sbjct: 62 GKLFAQWFRQESPMVLRRRLDPALWRWARRWVSECDAERFRINKLRLQRIGFYSRDVLEQ 121 Query: 144 LQAHYNMEHENSAGVFHLFRQSAEAARLPALQEAASQCEYKQLTLDAAGIRALEPAFSSE 203 L+ HYNM++E + G LFR + + L ++ E LDA R LEP + Sbjct: 122 LRLHYNMDYEQTVGHLQLFRGAPDVLLAQQLLTLLAEMEVPHNVLDADAARLLEPGLCAA 181 Query: 204 AALAGALYYPDDIAGNSVLFAKQMRNAAQALGVSFHFNSTVSSIRSEFGGRVTLEVQSPH 263 L AL++P D AGN LFAKQ++ AQ+LGVSF F +V I RV L ++ Sbjct: 182 TPLTAALHFPQDEAGNCALFAKQLKTIAQSLGVSFLFGKSVDRI-ERIDNRVALHME--- 237 Query: 264 LASHLTMDAVVVAAGMASAALLQPLDTSLPLRALQSYSALVPVKNPDDAPTMALYDDSYK 323 + T DAVV+ AG+ + LL L LP +Q YSA +++ D+AP +L DD+YK Sbjct: 238 -GNSFTADAVVLTAGIENPTLLNELGVRLPALPVQGYSATCSIRDFDEAPLASLTDDTYK 296 Query: 324 VAMTRLGSRIRISGLLGFVPASQTLPPKALRNLLKIAGDYYPNAANYNQAHFWSNSIAMM 383 +TR G+R+RI+G+L S +P A R L K+A D++PNA+NYN A WS M+ Sbjct: 297 TTITRFGNRVRIAGVLDPGARSPEVPEAAQRTLRKVATDWFPNASNYNNATLWSGLRTML 356 Query: 384 PTGLPVVGPTRQGNIFVNVGHGVTGWAASVGSARLLSDMMAGEETEIPTAGL 435 P G+PV+G T N++V + G +GW ++G+ ++LSD+++G +I GL Sbjct: 357 PDGVPVMGATPVRNVYVGLDDGASGWTTALGTGKILSDLVSGRTPDIDLDGL 408 >ref|YP_001100025.1| putative D-amino acid dehydrogenase small subunit [Herminiimonas arsenicoxydans] emb|CAL61900.1| D-amino acid dehydrogenase, small subunit [Herminiimonas arsenicoxydans] Length = 414 Score = 291 bits (746), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 164/404 (40%), Positives = 236/404 (58%), Gaps = 11/404 (2%) Query: 38 CSAYFLATKGYEVAVIERRAHVAEEATFGDSGLLAPGTAMPLTLPGALATFACRF-QDEP 96 C+AYFLA G++V VIERR +VAEEA+FGDSG+LAP + P PGA + + E Sbjct: 14 CTAYFLAEAGHQVVVIERRNNVAEEASFGDSGILAPASIAPWAAPGAAKSLLSHLLKSES 73 Query: 97 RVLLASGADFGRRRWMRA-TRAAQQHHFAQHKLILSRLSAYGQDLTQQLQAHYNMEHENS 155 +L D RW+R + + ++ + R++ Y + +QL+ + +++E + Sbjct: 74 PLLFNRMLDPSMWRWIRRWLKECDIERYQINRNRMQRIAFYSDQIMRQLRELHQLDYEQA 133 Query: 156 AGVFHLFRQSAEAA-RLPALQEAASQCEYKQLTLDAAGIRALEPAFSSEAALAGALYYPD 214 G LFR + PA A+ DA G RA+EPA + LAG+L+ P Sbjct: 134 PGYLQLFRSERDLQLAKPAFDFLAAHGIPHDFP-DADGARAIEPALNPHTPLAGSLHLPT 192 Query: 215 DIAGNSVLFAKQMRNAAQALGVSFHFNSTVSSIR-SEFGGRVTLEVQSPHLASHLTMDAV 273 D +GN LF +QMR AQA+GV FHF V SIR SE G + +E +S D V Sbjct: 193 DESGNCPLFTRQMRQLAQAIGVEFHFGCNVKSIRQSEHGVDIQIEDRS------FAADRV 246 Query: 274 VVAAGMASAALLQPLDTSLPLRALQSYSALVPVKNPDDAPTMALYDDSYKVAMTRLGSRI 333 V+A+G S+ LL PL LP+ ++SYSA ++N + AP AL D+SYKVA+TR+G+RI Sbjct: 247 VLASGADSSKLLAPLGLHLPVYPVKSYSATATIRNFESAPVAALMDESYKVAITRMGNRI 306 Query: 334 RISGLLGFVPASQTLPPKALRNLLKIAGDYYPNAANYNQAHFWSNSIAMMPTGLPVVGPT 393 RISG+ + L L LLK+ D++P+A NYN A FWS + M+P G P++G T Sbjct: 307 RISGMAELGARTSDLRQAGLNTLLKVGYDWFPDACNYNTAAFWSGTSLMLPDGPPLIGAT 366 Query: 394 RQGNIFVNVGHGVTGWAASVGSARLLSDMMAGEETEIPTAGLLP 437 + N++VN+GHG TGWA + GSAR+L+D+++G +I GL P Sbjct: 367 QVRNVYVNIGHGSTGWAMAAGSARVLADIVSGRTPDIDLDGLTP 410 >ref|YP_001353230.1| D-amino-acid dehydrogenase [Janthinobacterium sp. Marseille] gb|ABR88666.1| D-amino-acid dehydrogenase [Janthinobacterium sp. Marseille] Length = 414 Score = 285 bits (730), Expect = 8e-75, Method: Compositional matrix adjust. Identities = 161/414 (38%), Positives = 236/414 (57%), Gaps = 7/414 (1%) Query: 26 QIAVIGGGLSGICSAYFLATKGYEVAVIERRAHVAEEATFGDSGLLAPGTAMPLTLPGAL 85 Q+AVIG G+ G+ +AYFLA G+EV VIER +VAEEA++GDSG+LA + P PG Sbjct: 2 QVAVIGAGVIGVSTAYFLAEAGHEVVVIERHNNVAEEASYGDSGILAASSIAPWAAPGVP 61 Query: 86 ATF-ACRFQDEPRVLLASGADFGRRRWMRA-TRAAQQHHFAQHKLILSRLSAYGQDLTQQ 143 +F + + E VLL WMR + A + ++ + R+ Y +D+ Q Sbjct: 62 RSFLSYLLKSEAPVLLNQPWRPSMLGWMRRWMKEADIERYRINRERMQRIGFYSRDIMQM 121 Query: 144 LQAHYNMEHENSAGVFHLFRQSAEAARLPALQEAASQCEYKQLTLDAAGIRALEPAFSSE 203 L+ + +++E + G LFR + + S+ LDA A++ A + Sbjct: 122 LRERHQLDYEQTPGYLQLFRTERDLQLAKTSFDYLSEHNIPHKLLDAGQAHAVDSALNPN 181 Query: 204 AALAGALYYPDDIAGNSVLFAKQMRNAAQALGVSFHFNSTVSSIRSEFGGRVTLEVQSPH 263 LAGALY P+D AGN LF +Q+R AQA+GV F F S V SI G V L++ Sbjct: 182 TPLAGALYLPEDEAGNCPLFTRQIRAQAQAMGVEFLFGSKVKSIEESKRG-VHLQIDDHS 240 Query: 264 LASHLTMDAVVVAAGMASAALLQPLDTSLPLRALQSYSALVPVKNPDDAPTMALYDDSYK 323 ++ + VVVA G SA LL PL LPLRA++SY A ++N + AP A+ D++YK Sbjct: 241 FSA----ECVVVAGGADSAKLLTPLGLHLPLRAVKSYCATATIRNFESAPVAAVVDEAYK 296 Query: 324 VAMTRLGSRIRISGLLGFVPASQTLPPKALRNLLKIAGDYYPNAANYNQAHFWSNSIAMM 383 +A+TR+G RIR++G + L AL LLK+ D++P+A NYN A FWS S + Sbjct: 297 IAITRMGKRIRVAGTAELGSNNAELRQTALNTLLKVGYDWFPDACNYNTAAFWSGSSLAL 356 Query: 384 PTGLPVVGPTRQGNIFVNVGHGVTGWAASVGSARLLSDMMAGEETEIPTAGLLP 437 P G P++G R N+++N+GHG TGWA + GS ++L+D+++G +I GL P Sbjct: 357 PDGAPLLGACRVRNVYLNIGHGSTGWAMAAGSGKVLADVISGRTPDIDLDGLTP 410 >ref|YP_002005459.1| D-amino acid dehydrogenase subunit [Cupriavidus taiwanensis LMG 19424] emb|CAQ69392.1| D-amino acid dehydrogenase subunit [Cupriavidus taiwanensis LMG 19424] Length = 433 Score = 265 bits (678), Expect = 9e-69, Method: Compositional matrix adjust. Identities = 152/423 (35%), Positives = 235/423 (55%), Gaps = 11/423 (2%) Query: 26 QIAVIGGGLSGICSAYFLATKGYEVAVIERRAHVAEEATFGDSGLLAPGTAMPLTLPGAL 85 + VIG G G+ SA++L G++V V+ERR A+EA+FG++G++APG P PG Sbjct: 2 HVIVIGAGAIGVSSAWYLRQAGFDVTVLERRGAPAQEASFGNAGVIAPGYVTPWAAPGMP 61 Query: 86 AT-FACRFQDEPRVLLASGADFGRRRWM-RATRAAQQHHFAQHKLILSRLSAYGQDLTQQ 143 A F E VL AD RW+ R R + + +KL + RL+ Y + + Sbjct: 62 AKILRTLFAREAPVLFRPAADPAMWRWIARWLRECRLERYRANKLRMQRLAFYSRACLHR 121 Query: 144 LQAHYNMEHENSAGVFHLFRQSAEAARLPALQEAASQCEYKQLTLDAAGIRALEPAFSSE 203 L++ ++++E S G LFR + + + + A R +EP +++ Sbjct: 122 LRSELDIDYEQSQGYLQLFRTARDLDLASPAIALLRENHVPHRLVSAGECRQIEPGLAAD 181 Query: 204 AALAGALYYPDDIAGNSVLFAKQMRNAAQALGVSFHFNSTVSSIRSEFGGRVTLEVQSPH 263 LAG L+ P+D +GN +F + + AQA GVSF F++ V+ IR G++ LE+ P Sbjct: 182 TPLAGGLHLPEDESGNCPMFVRALHRHAQAAGVSFRFDTRVTRIRPGHAGKLELELSQPG 241 Query: 264 ---LASHLTMDAVVVAAGMASAALLQPLDTSLPLRALQSYSALVPVKNPDDAPTMALYDD 320 A L+ + V++AAG SAALL+PL +PL ++ YS V +++ AP AL D+ Sbjct: 242 GQGAAEVLSAERVLLAAGADSAALLRPLGLRVPLYPVKGYSVTVMIRDELQAPLGALMDE 301 Query: 321 SYKVAMTRLGSRIRISGLLGFVPASQTLPPKALRNLLKIAGDYYPNAANYNQAHFWSNSI 380 SYKVAMTR+G+R+R++G L P AL L+K+A D++P A NY++A W+ + Sbjct: 302 SYKVAMTRMGNRLRVAGTAELGSRRLDLRPAALNTLVKVARDWFPAAGNYHEATQWAGAR 361 Query: 381 AMMPTGLPVVGPTRQGNIFVNVGHGVTGWAASVGSARLLSDMMAGEE------TEIPTAG 434 M+P G P++GPT +F+N+GHG TGWA S GS ++ +D +A +I G Sbjct: 362 PMLPDGPPLIGPTAVPGLFLNLGHGSTGWAMSCGSGKIAADQIAASAGASHGGPDIDMEG 421 Query: 435 LLP 437 LLP Sbjct: 422 LLP 424 >ref|YP_726005.1| D-amino-acid dehydrogenase [Ralstonia eutropha H16] emb|CAJ92637.1| D-amino-acid dehydrogenase [Ralstonia eutropha H16] Length = 432 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 149/422 (35%), Positives = 231/422 (54%), Gaps = 10/422 (2%) Query: 26 QIAVIGGGLSGICSAYFLATKGYEVAVIERRAHVAEEATFGDSGLLAPGTAMPLTLPGAL 85 + VIG G G+ SA++L G++V V+ERRA A+EA+FG++G++APG P PG Sbjct: 2 HVIVIGAGAIGVSSAWYLRQAGFDVTVLERRAAPAQEASFGNAGVIAPGYVTPWAAPGMP 61 Query: 86 AT-FACRFQDEPRVLLASGADFGRRRWM-RATRAAQQHHFAQHKLILSRLSAYGQDLTQQ 143 F E VL AD RW+ R R + + +KL + RL+ Y + + Sbjct: 62 GKILRTLFAREAPVLFRPSADPAMWRWIARWLRECRLERYRANKLRMQRLAFYSRGCLHR 121 Query: 144 LQAHYNMEHENSAGVFHLFRQSAEAARLPALQEAASQCEYKQLTLDAAGIRALEPAFSSE 203 L++ +++E S G LFR + + + + A R +EP +++ Sbjct: 122 LRSELEIDYEQSQGYLQLFRTARDLDLAAPAVALLRENNVPHRLVSAQECRRIEPGLAAD 181 Query: 204 AALAGALYYPDDIAGNSVLFAKQMRNAAQALGVSFHFNSTVSSIRSEFGGRVTLEVQ--- 260 LAG L+ P+D +GN +F + + A+A GVSF F++ V+ +R + G++ +E+Q Sbjct: 182 TPLAGGLHLPEDESGNCPMFVRALHRHAEAAGVSFRFDTRVARVRPDNAGKLQVELQHSD 241 Query: 261 SPHLASHLTMDAVVVAAGMASAALLQPLDTSLPLRALQSYSALVPVKNPDDAPTMALYDD 320 L+ D V+VAAG S ALL+PL +PL ++ YS V V++ AP AL D+ Sbjct: 242 KKRPGQVLSADRVLVAAGADSTALLRPLGLRMPLYPVKGYSVTVMVRDELQAPLGALMDE 301 Query: 321 SYKVAMTRLGSRIRISGLLGFVPASQTLPPKALRNLLKIAGDYYPNAANYNQAHFWSNSI 380 SYKVA+TR+G+R+R++G L P AL L+K+A D++P A NY +A W + Sbjct: 302 SYKVAITRMGNRLRVAGTAELGSRKLDLRPAALNTLVKVARDWFPVAGNYQEATQWVGAR 361 Query: 381 AMMPTGLPVVGPTRQGNIFVNVGHGVTGWAASVGSARLLSDMMAGEE-----TEIPTAGL 435 M+P G P++GPT +F+N+GHG TGWA S GS ++ +D +A +I GL Sbjct: 362 PMLPDGPPLIGPTAVPGLFLNLGHGSTGWAMSCGSGKIAADQIAASAGTHGGPDIDMEGL 421 Query: 436 LP 437 LP Sbjct: 422 LP 423 >ref|YP_004685354.1| D-amino acid dehydrogenase small subunit [Cupriavidus necator N-1] gb|AEI76873.1| D-amino acid dehydrogenase small subunit [Cupriavidus necator N-1] Length = 432 Score = 259 bits (661), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 150/424 (35%), Positives = 232/424 (54%), Gaps = 14/424 (3%) Query: 26 QIAVIGGGLSGICSAYFLATKGYEVAVIERRAHVAEEATFGDSGLLAPGTAMPLTLPGAL 85 + VIG G G+ SA++L G++V V+ERRA A+EA+FG++G++APG P PG Sbjct: 2 HVIVIGAGAIGVSSAWYLRQAGFDVTVLERRAAPAQEASFGNAGVIAPGYVTPWAAPGMP 61 Query: 86 AT-FACRFQDEPRVLLASGADFGRRRWM-RATRAAQQHHFAQHKLILSRLSAYGQDLTQQ 143 F E VL AD RW+ R R + + +KL + RL+ Y + + Sbjct: 62 GKILRTLFAREAPVLFRPSADPAMWRWIARWLRECRLERYRANKLRMQRLAFYSRACLHR 121 Query: 144 LQAHYNMEHENSAGVFHLFRQSAEAARLPALQEAASQCEYKQLTLDAAGIRALEPAFSSE 203 L++ +++E S G LFR + + + + A R +EP +++ Sbjct: 122 LRSELEIDYEQSQGYLQLFRTARDLDLAAPAVALLRENNVPHRLVSAQECRRIEPGLAAD 181 Query: 204 AALAGALYYPDDIAGNSVLFAKQMRNAAQALGVSFHFNSTVSSIRSEFGGRVTLEV---- 259 LAG L+ P+D +GN +F + + A+A GVSF F++ V+ +R + G++ +E+ Sbjct: 182 TPLAGGLHLPEDESGNCPMFVRALHRHAEAAGVSFRFDTQVARVRPDNAGKLQVELSHAD 241 Query: 260 -QSPHLASHLTMDAVVVAAGMASAALLQPLDTSLPLRALQSYSALVPVKNPDDAPTMALY 318 Q P L D V+VAAG S ALL+PL +PL ++ YS V V++ AP AL Sbjct: 242 KQRP--GQVLNADRVLVAAGADSTALLRPLGLRVPLYPVKGYSVTVMVRDELQAPLGALM 299 Query: 319 DDSYKVAMTRLGSRIRISGLLGFVPASQTLPPKALRNLLKIAGDYYPNAANYNQAHFWSN 378 D+SYKVA+TR+G+R+R++G + L P AL L+K+A D++P A NY +A W Sbjct: 300 DESYKVAITRMGNRLRVAGTAELGSRTLDLRPAALNTLIKVARDWFPVAGNYQEATQWVG 359 Query: 379 SIAMMPTGLPVVGPTRQGNIFVNVGHGVTGWAASVGSARLLSDMMAGEE-----TEIPTA 433 + M+P G P++GPT +F+N+GHG TGWA S GS ++ +D +A +I Sbjct: 360 ARPMLPDGPPLIGPTAVPGLFLNLGHGSTGWAMSCGSGKITADQIAASAGPHGGPDIDME 419 Query: 434 GLLP 437 GLLP Sbjct: 420 GLLP 423 >ref|YP_004229702.1| D-amino-acid dehydrogenase [Burkholderia sp. CCGE1001] gb|ADX56642.1| D-amino-acid dehydrogenase [Burkholderia sp. CCGE1001] Length = 421 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 146/414 (35%), Positives = 234/414 (56%), Gaps = 11/414 (2%) Query: 29 VIGGGLSGICSAYFLATKGYEVAVIERRAHVAEEATFGDSGLLAPGTAMPLTLPGALAT- 87 V+GGG+ G+ +A++L +G EV +IER VA +FG++G++APG P PG A Sbjct: 5 VLGGGVIGVATAFYLRRQGSEVTLIEREPDVALATSFGNAGVIAPGYVTPWAAPGMPAKI 64 Query: 88 FACRFQDEPRVLLASGADFGRRRWM-RATRAAQQHHFAQHKLILSRLSAYGQDLTQQLQA 146 F+ ++ D + RW+ R R + F +K + R++ Y ++ ++ + Sbjct: 65 LKYLFKPASPLIFRPTLDAAQWRWIARWLRECELERFRVNKQRMQRIAYYSRECLREFRN 124 Query: 147 HYNMEHENSAGVFHLFRQS--AEAAR--LPALQEAASQCEYKQLTLDAAGIRALEPAFS- 201 ++ ++ S G LFR E A+ L L++A Y++++ AA +EP Sbjct: 125 YHPFDYGRSQGYLQLFRSEYDVELAQPALAVLRDAG--IAYREVS--AAQCVDIEPGLRW 180 Query: 202 SEAALAGALYYPDDIAGNSVLFAKQMRNAAQALGVSFHFNSTVSSIRSEFGGRVTLEVQS 261 + AA ++ PDD AG+ F +++R + GV F F++ V+S+ E G + VQS Sbjct: 181 ARAAPVSGVHLPDDEAGDCARFTRELRAICERHGVRFRFDTRVTSLDVEGGAVRAVRVQS 240 Query: 262 PHLASHLTMDAVVVAAGMASAALLQPLDTSLPLRALQSYSALVPVKNPDDAPTMALYDDS 321 H A L D+VVVA G+ SAALL PL +PL ++ YSA +PV + + AP AL D+S Sbjct: 241 QHGAQTLPADSVVVALGVDSAALLAPLGVKVPLYPVKGYSATLPVIDDEKAPRAALMDES 300 Query: 322 YKVAMTRLGSRIRISGLLGFVPASQTLPPKALRNLLKIAGDYYPNAANYNQAHFWSNSIA 381 K A+TR G+ +R++G TL +AL+ L+K+ D++P+AA AHFW Sbjct: 301 LKTAITRFGNNLRVAGTAELGNRHATLREQALQTLMKVLADWFPHAAAPTSAHFWVGRRP 360 Query: 382 MMPTGLPVVGPTRQGNIFVNVGHGVTGWAASVGSARLLSDMMAGEETEIPTAGL 435 M P G P++GP+ GN+++N+GHG TGWA S+GSAR+++D++ + EI GL Sbjct: 361 MTPDGAPLLGPSGIGNLWLNLGHGSTGWAMSMGSARVVADLITQRKPEIDLDGL 414 >ref|YP_584025.1| D-amino acid dehydrogenase [Cupriavidus metallidurans CH34] gb|ABF08756.1| D-amino acid dehydrogenase [Cupriavidus metallidurans CH34] Length = 429 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 156/422 (36%), Positives = 235/422 (55%), Gaps = 12/422 (2%) Query: 26 QIAVIGGGLSGICSAYFLATKGYEVAVIERRAHVAEEATFGDSGLLAPGTAMPLTLPGAL 85 + +IG G G+CSA++L G+EV V+ERR A+EA+FG++G++APG P PG Sbjct: 2 HVIIIGAGAIGVCSAWYLRQAGFEVTVLERRGAPAQEASFGNAGMIAPGYVTPWAAPGMP 61 Query: 86 ATFA-CRFQDEPRVLLASGADFGRRRWM-RATRAAQQHHFAQHKLILSRLSAYGQDLTQQ 143 FQ V+ D RW+ R R + +KL + R++ Y + + Sbjct: 62 GKIVRSLFQHASPVVFRPSVDPAMWRWIVRWLRECNPESYRTNKLRMQRVAFYSRACLHE 121 Query: 144 LQAHYNMEHENSAGVFHLFR-QSAEAARLPALQEAASQCEYKQLTLDAAGIRALEPAFSS 202 L++ +E+E S G LFR Q PAL QL +DAAG R +EP + Sbjct: 122 LRSALEIEYEQSRGYLQLFRTQRDLDLASPALALLRENNVPHQL-IDAAGCRRIEPGLTD 180 Query: 203 EAALAGALYYPDDIAGNSVLFAKQMRNAAQALGVSFHFNSTVSSIRSEFGGRVTLEVQS- 261 + LAG L+ P+D +GN +F +++ A+A GV F F + V+ +R GR+T+E+ + Sbjct: 181 DTPLAGGLHLPEDESGNCPIFVRRLHQHAEAAGVRFRFQTEVARLRRT-DGRLTVELAAL 239 Query: 262 -PHLASHLTMDAVVVAAGMASAALLQPLDTSLPLRALQSYSALVPVKNPDDAPTMALYDD 320 H L D V++AAG+ S LL+PL LPL ++ YSA V V + AP AL D+ Sbjct: 240 RGHAREVLDADRVLLAAGVGSETLLRPLGLRLPLYPVKGYSATVMVTDELQAPLGALMDE 299 Query: 321 SYKVAMTRLGSRIRISGLLGFVPASQTLPPKALRNLLKIAGDYYPNAANYNQAHFWSNSI 380 S+KVA+TR+G+R+R++G L P AL+ L+K+A D++P A +YN A W+ + Sbjct: 300 SFKVAITRMGNRLRVAGTAELGSRKLDLRPAALQTLIKVARDWFPVAGHYNAATLWAGAR 359 Query: 381 AMMPTGLPVVGPTRQGNIFVNVGHGVTGWAASVGSARLLSDMMA-----GEETEIPTAGL 435 M+P G P++G TR +F+N+GHG TGWA S GS ++ +D +A G+ I GL Sbjct: 360 PMLPDGPPLIGATRVPGLFLNLGHGSTGWAMSCGSGKIAADQIAASAGQGDGPAIDMDGL 419 Query: 436 LP 437 P Sbjct: 420 TP 421