BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0003.p (349 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775677.1| Ku domain-containing protein [Herbaspirillum... 642 0.0 ref|YP_003052337.1| Ku protein [Methylovorus glucosetrophus SIP3... 321 1e-85 ref|YP_001898089.1| Ku protein [Ralstonia pickettii 12J] >gi|187... 291 1e-76 ref|YP_003605011.1| Ku protein [Burkholderia sp. CCGE1002] >gi|2... 289 4e-76 ref|YP_003753396.1| ATP-dependent DNA helicase, Ku domain [Ralst... 288 9e-76 emb|CCA80105.1| ATP-dependent DNA helicase, Ku domain [blood dis... 288 9e-76 ref|ZP_02883526.1| Ku protein [Burkholderia graminis C4D1M] >gi|... 286 5e-75 ref|YP_003746658.1| ATP-dependent DNA helicase, ku domain [Ralst... 286 5e-75 ref|YP_002980467.1| Ku protein [Ralstonia pickettii 12D] >gi|240... 285 8e-75 ref|ZP_07675391.1| Ku protein [Ralstonia sp. 5_7_47FAA] >gi|3089... 284 2e-74 >ref|YP_003775677.1| Ku domain-containing protein [Herbaspirillum seropedicae SmR1] gb|ADJ63769.1| Ku domain containing protein [Herbaspirillum seropedicae SmR1] Length = 349 Score = 642 bits (1657), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/349 (97%), Positives = 344/349 (98%) Query: 1 MRRALWKGAISFGLINIPVELYTAEKHDELDFTLLDQRDLSPVGYKRYNKKSGREVPWEN 60 MRRALWKGAISFGLINIPVELYTAEKHDELDFTLLDQRDLSPVGYKRYNKKSGREVPWEN Sbjct: 1 MRRALWKGAISFGLINIPVELYTAEKHDELDFTLLDQRDLSPVGYKRYNKKSGREVPWEN 60 Query: 61 IIKGYQYEEGKYVLMSDEDLRRANVEATQSIDIQSFVEREQVPILYYEQPYFLAPAKGGD 120 IIKGYQYEEGKYVLMSDEDLRRANVEATQSIDIQSFVEREQVPILYYEQPYFLAPAKGGD Sbjct: 61 IIKGYQYEEGKYVLMSDEDLRRANVEATQSIDIQSFVEREQVPILYYEQPYFLAPAKGGD 120 Query: 121 KAYALLRETLLASDKMAIAQIVIRTRQHLAALIPQGDMLQLITLRYPSELRAPDDLPVPT 180 KAYALLRETLLASDKMAIAQIVIRTRQHLAALIPQGDMLQLITLRYPSELRAPDDLPVPT Sbjct: 121 KAYALLRETLLASDKMAIAQIVIRTRQHLAALIPQGDMLQLITLRYPSELRAPDDLPVPT 180 Query: 181 RKSKKAAVTRQEVEMARALVEHMSAQWEPEQFHDTYRDDVLALIQKKIKSRQTHEVAEPD 240 RKSKKAAVTRQEVEMARALVEHMSAQWEPEQFHDTYRDDVLALIQKK KSRQTHEVAEPD Sbjct: 181 RKSKKAAVTRQEVEMARALVEHMSAQWEPEQFHDTYRDDVLALIQKKTKSRQTHEVAEPD 240 Query: 241 EAAVPASSGAKVVDLMALLKSSLEGRGKSSAKAGDDKAPQEAKEKSGAKVHKLPARTPAA 300 EAA PASSGAKVVDLMALLKSSLEGRG+SSAKAGDDKAPQEAKEK GAKVHKLPAR PAA Sbjct: 241 EAAAPASSGAKVVDLMALLKSSLEGRGRSSAKAGDDKAPQEAKEKRGAKVHKLPARKPAA 300 Query: 301 NTATKTAATKTAAKSAAKPRTKTKTASTSKASRSAATRRSGSTARRAQA 349 NTATKTAATKTAAKS AKPRTK+KTASTSKASRSAATRRSGSTARRAQA Sbjct: 301 NTATKTAATKTAAKSVAKPRTKSKTASTSKASRSAATRRSGSTARRAQA 349 >ref|YP_003052337.1| Ku protein [Methylovorus glucosetrophus SIP3-4] gb|ACT51810.1| Ku protein [Methylovorus glucosetrophus SIP3-4] Length = 293 Score = 321 bits (823), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 147/278 (52%), Positives = 215/278 (77%) Query: 1 MRRALWKGAISFGLINIPVELYTAEKHDELDFTLLDQRDLSPVGYKRYNKKSGREVPWEN 60 M RALWKGAISFGL++IPVELY + +D +LD+RD SPVGYKRYNK +G+E+ E+ Sbjct: 1 MPRALWKGAISFGLVHIPVELYPSHNAPGIDLDMLDRRDFSPVGYKRYNKTTGKEIHTED 60 Query: 61 IIKGYQYEEGKYVLMSDEDLRRANVEATQSIDIQSFVEREQVPILYYEQPYFLAPAKGGD 120 I+KGYQYE+G+YV+++D ++R+AN EATQ+IDIQ+FV+ +++ LY+EQPY+L PAKGG+ Sbjct: 61 IVKGYQYEKGEYVVLTDAEIRQANKEATQAIDIQAFVKVDEISPLYFEQPYYLKPAKGGE 120 Query: 121 KAYALLRETLLASDKMAIAQIVIRTRQHLAALIPQGDMLQLITLRYPSELRAPDDLPVPT 180 K YALLRETL +D++ IAQIV+RT+QHLAAL+ ++ L LRY ++R P++L +P Sbjct: 121 KVYALLRETLRTTDRIGIAQIVMRTKQHLAALMVVDQVIVLNMLRYAEDIRPPEELGLPG 180 Query: 181 RKSKKAAVTRQEVEMARALVEHMSAQWEPEQFHDTYRDDVLALIQKKIKSRQTHEVAEPD 240 + K V+ +E++MA ALVE M+ W+PEQFHD +R+D++AL++KKI+++QTH + EP+ Sbjct: 181 EDAPKVRVSDKEIKMAHALVEDMTEPWDPEQFHDRFREDIMALVKKKIRNKQTHALMEPE 240 Query: 241 EAAVPASSGAKVVDLMALLKSSLEGRGKSSAKAGDDKA 278 + +S + +VDLMALLK S+ R K + ++ +KA Sbjct: 241 DETPADTSTSNIVDLMALLKESIGRRMKPAKESSGNKA 278 >ref|YP_001898089.1| Ku protein [Ralstonia pickettii 12J] gb|ACD25657.1| Ku protein [Ralstonia pickettii 12J] Length = 304 Score = 291 bits (746), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 146/312 (46%), Positives = 209/312 (66%), Gaps = 8/312 (2%) Query: 1 MRRALWKGAISFGLINIPVELYTAEKHDELDFTLLDQRDLSPVGYKRYNKKSGREVPWEN 60 M R +WKGA+SFGL++IPV LY A + D+LDF LD+R + VGYKR NK +G+EVP E Sbjct: 1 MPRVIWKGAVSFGLVHIPVALYPATRSDDLDFDWLDRRTMDRVGYKRINKTTGKEVPREQ 60 Query: 61 IIKGYQYEEGKYVLMSDEDLRRANVEATQSIDIQSFVEREQVPILYYEQPYFLAPAKGGD 120 I++GY YE+ +YV+++DED+R AN +TQ++D+ +FV+ ++P LY + PYFLAP + G+ Sbjct: 61 IVRGYAYEKDRYVILTDEDIRAANPASTQTVDLLTFVDAAEIPFLYLDTPYFLAPDRRGE 120 Query: 121 KAYALLRETLLASDKMAIAQIVIRTRQHLAALIPQGDMLQLITLRYPSELRAPDDLPVPT 180 K YALLRE L S K+ +A +V+ T+QHLAALIP G +L L TLR+ +E+R +L VP Sbjct: 121 KVYALLREALTRSQKIGVANVVLHTKQHLAALIPMGPVLVLHTLRWSNEVRDWSELDVPE 180 Query: 181 RKSKKAAVTRQEVEMARALVEHMSAQWEPEQFHDTYRDDVLALIQKKIKSRQTHEVAEPD 240 +K A +T +E++MA L++ MS W+P ++HDT+RDD+LAL+ +K++ +T V EP Sbjct: 181 EGAKAAKLTAKEIDMAEKLIDDMSGTWDPAEYHDTFRDDILALVDRKVREGRTESV-EPM 239 Query: 241 EAAVPASSGAKVVDLMALLKSSLEGRGKSSAKAGDDKAPQEAKEKSGAKVHKLPARTPAA 300 EA A V+DL LL+ SL RG+ A +DKA +E + A R A+ Sbjct: 240 EAETAAPRSGNVIDLTDLLRQSLAKRGEGK-DASNDKAQEEPAPRKRA------PRKAAS 292 Query: 301 NTATKTAATKTA 312 TA KT K A Sbjct: 293 KTARKTTTRKRA 304 >ref|YP_003605011.1| Ku protein [Burkholderia sp. CCGE1002] gb|ADG15500.1| Ku protein [Burkholderia sp. CCGE1002] Length = 334 Score = 289 bits (740), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 146/337 (43%), Positives = 226/337 (67%), Gaps = 4/337 (1%) Query: 1 MRRALWKGAISFGLINIPVELYTAEKHDELDFTLLDQRDLSPVGYKRYNKKSGREVPWEN 60 M +WKGAISFGL+++PV+LY A K +++ F LLD+R + P+GYK+ NK++G++V EN Sbjct: 1 MAHMIWKGAISFGLVHVPVQLYPATKSEKVGFNLLDKRTIDPIGYKQINKRTGKDVTREN 60 Query: 61 IIKGYQYEEGKYVLMSDEDLRRANVEATQSIDIQSFVEREQVPILYYEQPYFLAPAKGGD 120 I++G++YE+ YV++SD+++R AN E+TQ++DI +FV+ + LY + PYFL P + G+ Sbjct: 61 IVRGFEYEKDHYVVLSDDEIRSANPESTQTVDILAFVDATDISFLYLDTPYFLTPDRKGE 120 Query: 121 KAYALLRETLLASDKMAIAQIVIRTRQHLAALIPQGDMLQLITLRYPSELRAPDDLPVPT 180 K YALLRE + AS K+ +A +V+ +QHLAALIP G ML L TLR+ E+R D+ VP Sbjct: 121 KVYALLREAMTASGKIGVASVVLHNKQHLAALIPLGPMLALNTLRWADEVRGLDEFKVPP 180 Query: 181 RKSKKAAVTRQEVEMARALVEHMSAQWEPEQFHDTYRDDVLALIQKKIKSRQTHEVAEPD 240 K A V+ +E++MA+ L+ MS W+P Q+HDT+RDD++AL+++KI++ +T EV E Sbjct: 181 EGMKAAGVSAKELDMAKKLIYDMSETWDPMQYHDTFRDDIMALVERKIQAGKTEEVTEV- 239 Query: 241 EAAVPASSGAKVVDLMALLKSSLEGRGKS-SAKAGDDKAPQEAKEKSGAKVHKLPARTPA 299 EA + A ++DL LLK SL GRGK A G +A E ++++ ++ + PA Sbjct: 240 EAPHESRKSADILDLSDLLKRSL-GRGKGKQAATGRKRAADEDEDQTDSEADE-EPAAPA 297 Query: 300 ANTATKTAATKTAAKSAAKPRTKTKTASTSKASRSAA 336 A T+ ++ + S R +KT +TS+ R+AA Sbjct: 298 RKRARATSTARSRSGSGGSARVTSKTTATSRKRRAAA 334 >ref|YP_003753396.1| ATP-dependent DNA helicase, Ku domain [Ralstonia solanacearum PSI07] emb|CBJ52136.1| ATP-dependent DNA helicase, Ku domain [Ralstonia solanacearum PSI07] Length = 311 Score = 288 bits (737), Expect = 9e-76, Method: Compositional matrix adjust. Identities = 150/314 (47%), Positives = 209/314 (66%), Gaps = 18/314 (5%) Query: 1 MRRALWKGAISFGLINIPVELYTAEKHDELDFTLLDQRDLSPVGYKRYNKKSGREVPWEN 60 M R +WKGAISFGL++IPV LY A D+LDF LD+R + VGYKR NK +G EVP E Sbjct: 1 MFRVIWKGAISFGLVHIPVALYPATHSDDLDFDWLDRRTMDRVGYKRINKATGEEVPHEQ 60 Query: 61 IIKGYQYEEGKYVLMSDEDLRRANVEATQSIDIQSFVEREQVPILYYEQPYFLAPAKGGD 120 I++GY YE+ +YV+++D D+R AN +TQ++D+ +FV+ ++P LY + PY+LAP + G+ Sbjct: 61 IVRGYAYEKDRYVILTDADIRAANPASTQTVDLLAFVDITEIPFLYLDTPYYLAPDRHGE 120 Query: 121 KAYALLRETLLASDKMAIAQIVIRTRQHLAALIPQGDMLQLITLRYPSELRAPDDLPVPT 180 K YALLRE + S K+ +A +V+ T+QHLAALIP G +L L TLR+ SE+R L +PT Sbjct: 121 KVYALLREAMAQSQKIGVANVVLHTKQHLAALIPMGPVLVLHTLRWASEVRDWSALDLPT 180 Query: 181 RKSKKAAVTRQEVEMARALVEHMSAQWEPEQFHDTYRDDVLALIQKKIKSRQTH--EVAE 238 K A +T +E+ MA+ L+E M+ W+P Q+HDT+RDD+LAL+ +K++ +T E AE Sbjct: 181 EGPKAAQLTPKEIGMAQKLIEDMADTWDPAQYHDTFRDDILALVDRKVREGRTESVETAE 240 Query: 239 PDEAAVPASSGAKVVDLMALLKSSLEGR-GKSSAKAG--DDKAPQEAKEKSGAKVHKLPA 295 P A P + V+DL LL+ SL R GK + +AG DD+ P H+ P Sbjct: 241 PAAGAAPRTD--NVIDLTDLLRRSLGQRGGKDAPRAGADDDRPPP----------HRTP- 287 Query: 296 RTPAANTATKTAAT 309 R PAA TA KT AT Sbjct: 288 RKPAAGTARKTTAT 301 >emb|CCA80105.1| ATP-dependent DNA helicase, Ku domain [blood disease bacterium R229] Length = 311 Score = 288 bits (737), Expect = 9e-76, Method: Compositional matrix adjust. Identities = 150/314 (47%), Positives = 209/314 (66%), Gaps = 18/314 (5%) Query: 1 MRRALWKGAISFGLINIPVELYTAEKHDELDFTLLDQRDLSPVGYKRYNKKSGREVPWEN 60 M R +WKGAISFGL++IPV LY A D+LDF LD+R + VGYKR NK +G EVP E Sbjct: 1 MFRVIWKGAISFGLVHIPVALYPATHSDDLDFDWLDRRTMDRVGYKRINKATGEEVPHEQ 60 Query: 61 IIKGYQYEEGKYVLMSDEDLRRANVEATQSIDIQSFVEREQVPILYYEQPYFLAPAKGGD 120 I++GY YE+ +YV+++D D+R AN +TQ++D+ +FV+ ++P LY + PY+LAP + G+ Sbjct: 61 IVRGYAYEKDRYVILTDADIRAANPASTQTVDLLAFVDITEIPFLYLDTPYYLAPDRHGE 120 Query: 121 KAYALLRETLLASDKMAIAQIVIRTRQHLAALIPQGDMLQLITLRYPSELRAPDDLPVPT 180 K YALLRE + S K+ +A +V+ T+QHLAALIP G +L L TLR+ SE+R L +PT Sbjct: 121 KVYALLREAMAQSQKIGVANVVLHTKQHLAALIPMGPVLVLHTLRWASEVRDWSALDLPT 180 Query: 181 RKSKKAAVTRQEVEMARALVEHMSAQWEPEQFHDTYRDDVLALIQKKIKSRQTH--EVAE 238 K A +T +E+ MA+ L+E M+ W+P Q+HDT+RDD+LAL+ +K++ +T E AE Sbjct: 181 EGPKAAQLTPKEIGMAQKLIEDMADTWDPAQYHDTFRDDILALVDRKVREGRTESVETAE 240 Query: 239 PDEAAVPASSGAKVVDLMALLKSSLEGR-GKSSAKAG--DDKAPQEAKEKSGAKVHKLPA 295 P A P + V+DL LL+ SL R GK + +AG DD+ P H+ P Sbjct: 241 PAAGAAPRTD--NVIDLSDLLRRSLGQRGGKDAPRAGADDDRPPP----------HRTP- 287 Query: 296 RTPAANTATKTAAT 309 R PAA TA KT AT Sbjct: 288 RKPAAGTARKTTAT 301 >ref|ZP_02883526.1| Ku protein [Burkholderia graminis C4D1M] gb|EDT10958.1| Ku protein [Burkholderia graminis C4D1M] Length = 335 Score = 286 bits (731), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 145/351 (41%), Positives = 229/351 (65%), Gaps = 18/351 (5%) Query: 1 MRRALWKGAISFGLINIPVELYTAEKHDELDFTLLDQRDLSPVGYKRYNKKSGREVPWEN 60 M +WKGAISFGL+++PV+LY A K +++ F LLD+R + PVGYK+ NK++G++V +N Sbjct: 1 MAHMIWKGAISFGLVHVPVQLYPATKSEKVGFNLLDKRTIDPVGYKQINKRTGKDVTRDN 60 Query: 61 IIKGYQYEEGKYVLMSDEDLRRANVEATQSIDIQSFVEREQVPILYYEQPYFLAPAKGGD 120 I++G++YE+ KYV++SDE++R AN E+TQ++DI +FV+ + LY + PYFL P + G+ Sbjct: 61 IVRGFEYEKDKYVVLSDEEIRAANPESTQTVDILAFVDAPDISFLYLDTPYFLTPDRKGE 120 Query: 121 KAYALLRETLLASDKMAIAQIVIRTRQHLAALIPQGDMLQLITLRYPSELRAPDDLPVPT 180 K YALLRE + +S K+ +A +V+ +QHLAALIP G +L L TLR+ E+R D+ +P Sbjct: 121 KVYALLREAMKSSGKVGVASVVLHNKQHLAALIPVGPVLALNTLRWADEVRDFDEFKLPA 180 Query: 181 RKSKKAAVTRQEVEMARALVEHMSAQWEPEQFHDTYRDDVLALIQKKIKSRQTHEVAEPD 240 +K A V+ +E++MA+ L++ MS W+P ++HDT+RDD++AL+++K++ +T E+ + Sbjct: 181 EGAKAAGVSARELDMAQKLIDDMSDTWDPSKYHDTFRDDIMALVERKVREGKTEEITDI- 239 Query: 241 EAAVPASSGAKVVDLMALLKSSLEGRGKSSAKAGDDK--APQEAKEKSGAKVHKLPARTP 298 EA + A ++DL LLK SL GRGKS +G K A EA +++ Sbjct: 240 EAPRESRQSADILDLSDLLKRSL-GRGKSKPASGSRKRAADDEAADET------------ 286 Query: 299 AANTATKTAATKTAAKSAAKPRTKTKTASTSKASRSAATRRSGSTARRAQA 349 + A + + + A K + RT + S K+ R+AA + S RRA A Sbjct: 287 --SDADEDSGSTAAPKKSRSTRTSRASTSGGKSGRAAAKSTTASRKRRAAA 335 >ref|YP_003746658.1| ATP-dependent DNA helicase, ku domain [Ralstonia solanacearum CFBP2957] emb|CBJ44072.1| ATP-dependent DNA helicase, Ku domain [Ralstonia solanacearum CFBP2957] Length = 317 Score = 286 bits (731), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 150/324 (46%), Positives = 210/324 (64%), Gaps = 13/324 (4%) Query: 1 MRRALWKGAISFGLINIPVELYTAEKHDELDFTLLDQRDLSPVGYKRYNKKSGREVPWEN 60 M R +WKGAISFGL++IPV LY A + D+LDF LD+R + VGYKR NK +G+EVP E Sbjct: 1 MLRVIWKGAISFGLVHIPVALYPATRSDDLDFDWLDRRTMDRVGYKRINKATGKEVPREQ 60 Query: 61 IIKGYQYEEGKYVLMSDEDLRRANVEATQSIDIQSFVEREQVPILYYEQPYFLAPAKGGD 120 I++GY YE+ +YV+++DED+R AN +TQ++D+ +FV+ ++P LY + PY+LAP + G+ Sbjct: 61 IVRGYAYEKDRYVILTDEDIRAANPASTQTVDLLAFVDLTEIPFLYLDTPYYLAPDRHGE 120 Query: 121 KAYALLRETLLASDKMAIAQIVIRTRQHLAALIPQGDMLQLITLRYPSELRAPDDLPVPT 180 K YALLRE + S K+ +A +V+ TRQHLAALIP G +L L TLR+ +E+R +L +P Sbjct: 121 KVYALLREAMAQSQKIGVANVVLHTRQHLAALIPMGPVLVLHTLRWANEVRDWSELDLPA 180 Query: 181 RKSKKAAVTRQEVEMARALVEHMSAQWEPEQFHDTYRDDVLALIQKKIKSRQTHEV--AE 238 +K A T +E+ MA+ L+E M+ W+P Q+HDT+RDD+LAL+++K++ +T V E Sbjct: 181 EGAKAAQPTPREIRMAQQLIEDMADAWDPAQYHDTFRDDILALVERKVREGRTESVEPVE 240 Query: 239 PDEAAVPASSGAKVVDLMALLKSSLEGRGKSSAKAGDDKAPQEAKEKSGAKVHKLPARTP 298 P A A V+DL LL+ SL RG G DK P G+ P RTP Sbjct: 241 PAAKAGAAPRADNVIDLTDLLRRSLGQRG------GKDKPPASTGADDGSPP---PHRTP 291 Query: 299 --AANTATKTAATKTAAKSAAKPR 320 A TA KT T AK A+ R Sbjct: 292 RKPAGTARKTTRTAATAKRASPRR 315 >ref|YP_002980467.1| Ku protein [Ralstonia pickettii 12D] gb|ACS61795.1| Ku protein [Ralstonia pickettii 12D] Length = 304 Score = 285 bits (729), Expect = 8e-75, Method: Compositional matrix adjust. Identities = 136/285 (47%), Positives = 199/285 (69%), Gaps = 6/285 (2%) Query: 1 MRRALWKGAISFGLINIPVELYTAEKHDELDFTLLDQRDLSPVGYKRYNKKSGREVPWEN 60 M R +WKGA+SFGL++IPV LY A + D+LDF LD+R + VGYKR NK +G+EVP E Sbjct: 1 MPRVIWKGAVSFGLVHIPVALYPATRSDDLDFDWLDRRTMDRVGYKRINKTTGKEVPREQ 60 Query: 61 IIKGYQYEEGKYVLMSDEDLRRANVEATQSIDIQSFVEREQVPILYYEQPYFLAPAKGGD 120 I++GY YE+ +YV+++DED+R AN +TQ++D+ +FV+ ++P LY + PYFLAP + G+ Sbjct: 61 IVRGYAYEKDRYVILTDEDIRAANPVSTQTVDLLTFVDAAEIPFLYLDTPYFLAPDRRGE 120 Query: 121 KAYALLRETLLASDKMAIAQIVIRTRQHLAALIPQGDMLQLITLRYPSELRAPDDLPVPT 180 K YALLRE L S K+ +A +V+ T+QHLAALIP G +L L TLR+ +E+R +L VP Sbjct: 121 KVYALLREALTRSQKIGVANVVLHTKQHLAALIPMGPVLVLHTLRWSNEVRDWSELDVPE 180 Query: 181 RKSKKAAVTRQEVEMARALVEHMSAQWEPEQFHDTYRDDVLALIQKKIKSRQTHEVAEPD 240 +K A +T +E++MA L++ MS +W+P ++HDT+RDD+L L+ +K++ +T V EP Sbjct: 181 EGAKAAKLTAKEIDMAEKLIDDMSGKWDPAEYHDTFRDDILGLVDRKVREGRTESV-EPM 239 Query: 241 EAAVPASSGAKVVDLMALLKSSLEGRGKSSAKAGDDKAPQEAKEK 285 E A V+DL LL+ SL RGK G ++ QEA+E+ Sbjct: 240 ETETAAPRSGNVIDLTDLLRQSLAKRGK-----GKGESAQEAEEE 279 >ref|ZP_07675391.1| Ku protein [Ralstonia sp. 5_7_47FAA] gb|EFP66227.1| Ku protein [Ralstonia sp. 5_7_47FAA] Length = 304 Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 133/284 (46%), Positives = 201/284 (70%), Gaps = 5/284 (1%) Query: 1 MRRALWKGAISFGLINIPVELYTAEKHDELDFTLLDQRDLSPVGYKRYNKKSGREVPWEN 60 M R +WKGA+SFGL++IPV LY A + D+LDF LD+R + VGYKR NK +G+EVP E Sbjct: 1 MPRVIWKGAVSFGLVHIPVALYPATRSDDLDFDWLDRRTMDRVGYKRINKTTGKEVPREQ 60 Query: 61 IIKGYQYEEGKYVLMSDEDLRRANVEATQSIDIQSFVEREQVPILYYEQPYFLAPAKGGD 120 I++GY YE+ +YV+++DED+R AN +TQ++D+ +FV+ ++P LY + PYFLAP + G+ Sbjct: 61 IVRGYAYEKDRYVILTDEDIRAANPASTQTVDLLTFVDAAEIPFLYLDTPYFLAPDRRGE 120 Query: 121 KAYALLRETLLASDKMAIAQIVIRTRQHLAALIPQGDMLQLITLRYPSELRAPDDLPVPT 180 K YALLRE L S K+ +A +V+ T+QHLAALIP G +L L TLR+ +E+R +L +P Sbjct: 121 KVYALLREALTRSQKIGVANVVLHTKQHLAALIPMGPVLVLHTLRWSNEVRDWSELDLPE 180 Query: 181 RKSKKAAVTRQEVEMARALVEHMSAQWEPEQFHDTYRDDVLALIQKKIKSRQTHEVAEPD 240 +K A +T +E++MA L++ MS +W+P ++HDT+RDD+L L+ +K++ +T V EP Sbjct: 181 EGAKAAKLTAKEIDMAEKLIDDMSGKWDPAEYHDTFRDDILGLVDRKVREGRTESV-EPM 239 Query: 241 EAAVPASSGAKVVDLMALLKSSL----EGRGKSSAKAGDDKAPQ 280 E A V+DL LL+ SL +G+G+S+ +A ++ AP+ Sbjct: 240 ETETAAPRSGNVIDLTDLLRQSLAKRGKGKGESAKEAEEEPAPR 283