BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0002.p (856 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775678.1| ATP-dependent DNA ligase [Herbaspirillum ser... 1706 0.0 ref|YP_003052338.1| DNA ligase D [Methylovorus glucosetrophus SI... 909 0.0 ref|ZP_08137910.1| ATP-dependent DNA ligase [Pseudomonas sp. TJI... 737 0.0 gb|EGH66324.1| ATP-dependent DNA ligase [Pseudomonas syringae pv... 737 0.0 ref|YP_347829.1| ATP-dependent DNA ligase [Pseudomonas fluoresce... 733 0.0 gb|EGH10893.1| ATP-dependent DNA ligase [Pseudomonas syringae pv... 733 0.0 gb|EGH99524.1| ATP-dependent DNA ligase [Pseudomonas syringae pv... 732 0.0 ref|ZP_03399463.1| DNA ligase, ATP-dependent [Pseudomonas syring... 731 0.0 ref|NP_793244.1| ATP-dependent DNA ligase [Pseudomonas syringae ... 731 0.0 ref|YP_004354142.1| DNA ligase (ATP) [Pseudomonas brassicacearum... 727 0.0 >ref|YP_003775678.1| ATP-dependent DNA ligase [Herbaspirillum seropedicae SmR1] gb|ADJ63770.1| ATP-dependent DNA ligase protein [Herbaspirillum seropedicae SmR1] Length = 856 Score = 1706 bits (4418), Expect = 0.0, Method: Compositional matrix adjust. Identities = 843/856 (98%), Positives = 846/856 (98%) Query: 1 MSTGKLDRYRAKRDFTITPEPSGHASRSRAEAQSQSLQFFIQRHHARRLHYDFRLELDGV 60 MSTGKLDRYRAKRDFTITPEPSGHASRSRA AQSQSLQFFIQRHHARRLHYDFRLELDGV Sbjct: 1 MSTGKLDRYRAKRDFTITPEPSGHASRSRAGAQSQSLQFFIQRHHARRLHYDFRLELDGV 60 Query: 61 LKSWAVPKGPSLDPHDKRLAVRVEDHPFDYGSFEGDIPAHQYGAGHVVLWDRGQWRPHGD 120 LKSWAVPKGPSLDPHDKRLAVRVEDHPFDYGSFEGDIPAHQYGAGHVVLWDRGQWRPHGD Sbjct: 61 LKSWAVPKGPSLDPHDKRLAVRVEDHPFDYGSFEGDIPAHQYGAGHVVLWDRGQWRPHGD 120 Query: 121 ARAGLAKGHLSFELEGEKLQGRWALVRMGKPAADGKENWLLIKDDDAAAASGEQAAITEL 180 ARAGLAKGHLSFELEGEKL GRWALVRMGKPAADGKENWLLIKDDDAAAASGEQAAITEL Sbjct: 121 ARAGLAKGHLSFELEGEKLHGRWALVRMGKPAADGKENWLLIKDDDAAAASGEQAAITEL 180 Query: 181 RPESVKDLGDQAPPVKARASAKAAPDSTGPMPAQMQAQLATLVDRAPAGEQWLCELKFDG 240 RPESVKDLGDQAP KARASAKAAPDSTGPMPAQMQAQLATLVDRAPAGEQWLCELKFDG Sbjct: 181 RPESVKDLGDQAPLAKARASAKAAPDSTGPMPAQMQAQLATLVDRAPAGEQWLCELKFDG 240 Query: 241 YRGLCRIDHGQAAIYTREGLDWSHRWPILAQALARLPVDEAWIDGEVVALDAQGQISFEA 300 YRGLCRIDHGQAAIYTREGLDWSHRWPIL QALARLPVDEAWIDGEVVALDAQGQISFEA Sbjct: 241 YRGLCRIDHGQAAIYTREGLDWSHRWPILVQALARLPVDEAWIDGEVVALDAQGQISFEA 300 Query: 301 LQNLARGDRQQADGIRLALYAFDLLYLNGHDLREIPLRQRKELLRELIPGSDPEGLLLYS 360 LQNLARGDRQQADGIRLALYAFDLLYLNGHDLR+IPLRQRK LLRELIPGSDPEGLLLYS Sbjct: 301 LQNLARGDRQQADGIRLALYAFDLLYLNGHDLRDIPLRQRKALLRELIPGSDPEGLLLYS 360 Query: 361 EHIEGHAAEVFRHACQHGMEGIVLKRADAPYTGRRDRYWLKLKCEHRQEFVIAGYTEPAG 420 EHIEGHAAEVFRHACQHGMEGIVLKRADAPYTGRRDRYWLKLKCEHRQEFVIAGYTEPAG Sbjct: 361 EHIEGHAAEVFRHACQHGMEGIVLKRADAPYTGRRDRYWLKLKCEHRQEFVIAGYTEPAG 420 Query: 421 QRSGFGAILVGVYDEHEQLRYAGRVGTGFDDKLLETLLKQFGPLEQDQPAFANPPTGQQR 480 QRSGFGAILVGVYDEHEQLRYAGRVGTGFDDKLLETLLKQFGPLEQDQPAFANPPTGQQR Sbjct: 421 QRSGFGAILVGVYDEHEQLRYAGRVGTGFDDKLLETLLKQFGPLEQDQPAFANPPTGQQR 480 Query: 481 RGVHWLRPALVAEVRFAQWTSTGILRHGSFVALREDKDPHQIRREGPQPLAEAKADAKAP 540 RGVHWLRPALVAEVRFAQWTS GILRHGSFVALREDKDPHQIRREGPQPLAEAKADAKAP Sbjct: 481 RGVHWLRPALVAEVRFAQWTSAGILRHGSFVALREDKDPHQIRREGPQPLAEAKADAKAP 540 Query: 541 AAAPARSPGKASDLSAPVTVAGVKLTHPGKILFPDTGLTKLELARYYQSVAPWILPELRQ 600 AAAPARS GKASDLSAPVTVAGVKLTHPGKILFPDTGLTKLELARYYQSVAPWILPELRQ Sbjct: 541 AAAPARSRGKASDLSAPVTVAGVKLTHPGKILFPDTGLTKLELARYYQSVAPWILPELRQ 600 Query: 601 RPLSLVRCPDGHAGKCFFQKHTGQGMPEAIDTIEVPEGEGHAQYMMVNDVAGLVATVQMG 660 RPLSLVRCPDGHAGK FFQKHTGQGMPEAIDTIEVPEGEGHAQYMMVNDVAGLVATVQMG Sbjct: 601 RPLSLVRCPDGHAGKRFFQKHTGQGMPEAIDTIEVPEGEGHAQYMMVNDVAGLVATVQMG 660 Query: 661 VLELHAWGATGAALDHPDRVVFDLDPADDVPWATVVEGAQLVRGLLKEIGLDCFLKTSGG 720 VLELHAWGATGAAL+HPDRVVFDLDPADDVPWATVVEGAQLVRGLLKEIGLDCFLKTSGG Sbjct: 661 VLELHAWGATGAALNHPDRVVFDLDPADDVPWATVVEGAQLVRGLLKEIGLDCFLKTSGG 720 Query: 721 KGLHVMVPIRPEHDWAVVKDWAHRFAAHLARHLPDRFIAKMSKAARNGKIFIDYLRNAPG 780 KGLHVMVPIRPEHDWAVVKDWAHRFAAHLARHLPDRFIAKMSKAARNGKIFIDYLRNAPG Sbjct: 721 KGLHVMVPIRPEHDWAVVKDWAHRFAAHLARHLPDRFIAKMSKAARNGKIFIDYLRNAPG 780 Query: 781 ATTVVAYSVRARDGAPVSVPITWEELEQGKGIKADHFRVSTMPARIRSLEQHDPWAGFGQ 840 ATTVVAYSVRARDGAPVSVPITWEELEQGKGIKADHFRVSTMPARIRSLEQHDPWA FGQ Sbjct: 781 ATTVVAYSVRARDGAPVSVPITWEELEQGKGIKADHFRVSTMPARIRSLEQHDPWAHFGQ 840 Query: 841 APQRLTKAMLAAFDSI 856 APQRLTKAMLAAFDS+ Sbjct: 841 APQRLTKAMLAAFDSV 856 >ref|YP_003052338.1| DNA ligase D [Methylovorus glucosetrophus SIP3-4] gb|ACT51811.1| DNA ligase D [Methylovorus glucosetrophus SIP3-4] Length = 870 Score = 909 bits (2349), Expect = 0.0, Method: Compositional matrix adjust. Identities = 463/882 (52%), Positives = 587/882 (66%), Gaps = 49/882 (5%) Query: 6 LDRYRAKRDFTITPEPSGHASRSRAEAQSQSLQFFIQRHHARRLHYDFRLELDGVLKSWA 65 L+ Y KR+F ITPEPSG + + +L F+IQRHHARRLHYDFRLELDGVLKSWA Sbjct: 3 LNHYWQKRNFNITPEPSGQVAEA-----GDTLAFYIQRHHARRLHYDFRLELDGVLKSWA 57 Query: 66 VPKGPSLDPHDKRLAVRVEDHPFDYGSFEGDIPAHQYGAGHVVLWDRGQWRPHGDARAGL 125 +PKGP+LDP +KRLAV VEDHP +YG FEG IP HQYGAG V+LWD G W P D G Sbjct: 58 IPKGPTLDPKEKRLAVHVEDHPLEYGHFEGQIPEHQYGAGKVILWDCGTWEPLEDPHVGY 117 Query: 126 AKGHLSFELEGEKLQGRWALVRMGKPAADG---KENWLLIKDDDAAAASGEQAAITELRP 182 KG L F L GEKL G+WALVRMGK A+G KENWLLIK+ D A SGEQA ITE RP Sbjct: 118 QKGALKFMLHGEKLSGKWALVRMGKTPAEGSSEKENWLLIKEKDDVAQSGEQANITENRP 177 Query: 183 ESVKDL--GDQAPPVKARASAK------------------AAPD------STGPMPAQMQ 216 ES++ L GD P+K+ A+ A+PD T PMP MQ Sbjct: 178 ESIRRLFSGDTHRPLKSSDKARRVSVASTLSSRQSAGAHHASPDLDGEVGKTQPMPTTMQ 237 Query: 217 AQLATLVDRAPAGEQWLCELKFDGYRGLCRIDHGQAAIYTREGLDWSHRWPILAQALARL 276 QLA L +AP GE WL E+KFDGYR L R + G+ +Y+R G DW+ +W +A AL +L Sbjct: 238 PQLALLAKKAPVGEHWLTEVKFDGYRMLARCEDGEVKLYSRNGHDWTAKWKGIADALKQL 297 Query: 277 PVDEAWIDGEVVALDAQGQISFEALQNLARGDRQQADGIRLALYAFDLLYLNGHDLREIP 336 P+D+AW+DGE+VAL G+ISF+ALQ+ + + + LA + FDL+YLNGHDLR P Sbjct: 298 PIDQAWLDGELVALQPNGKISFQALQDAMQAN----NAATLAYFVFDLMYLNGHDLRSQP 353 Query: 337 LRQRKELLRELIP----GSDPEGLLLYSEHIEGHAAEVFRHACQHGMEGIVLKRADAPYT 392 L +RK LL+ ++ S L +S+HI G+A EVF HAC H +EGI+ KRA++PY Sbjct: 354 LIKRKALLKTVLQRAADDSQAPSPLHFSDHIVGNAPEVFDHACLHDLEGIIAKRAESPYQ 413 Query: 393 GRRDRYWLKLKCEHRQEFVIAGYTEPAGQRSGFGAILVGVYDEHEQLRYAGRVGTGFDDK 452 RR WLK+KC RQEFVI GYT+PAG R GFGA+L+GVYD L YAGRVGTGF + Sbjct: 414 PRRTEDWLKIKCGLRQEFVIGGYTDPAGSRQGFGALLLGVYDAEGALHYAGRVGTGFTET 473 Query: 453 LLETLLKQFGPLEQDQPAFANPPTGQQRRGVHWLRPALVAEVRFAQWTSTGILRHGSFVA 512 L + KQF L++ F TG Q RGVHWL P LVAEVRFAQWT + I+RH +FV Sbjct: 474 TLAQVSKQFSRLQRASSPFTGKLTGLQMRGVHWLTPKLVAEVRFAQWTDSQIVRHAAFVG 533 Query: 513 LREDKDPHQIRREGPQPLAEAKADAKAPAAAPARSPGKASDLSAPV-TVAGVKLTHPGKI 571 LR+DK +I E P DA A++P +S + S V +AGV+LTHPGKI Sbjct: 534 LRQDKPAREIVHETPANPPPPTEDA---ASSPEQSGQQRPQRSGSVREIAGVRLTHPGKI 590 Query: 572 LFPDTGLTKLELARYYQSVAPWILPELRQRPLSLVRCPDGHAGKCFFQKHTGQGMPEAID 631 LF GLTK +LA YY+ +APWILP+L+ RPLSLVRCP G +CFFQKH +P+ + Sbjct: 591 LFAQAGLTKQDLAHYYEEIAPWILPQLQGRPLSLVRCPTGAGQQCFFQKHAAMTIPDNVR 650 Query: 632 TIEVPEGEGHAQYMMVNDVAGLVATVQMGVLELHAWGATGAALDHPDRVVFDLDPADDVP 691 I+VP YM+V+D+ L+ VQMGVLE+H WG+ L+ PDR++FDLDP + +P Sbjct: 651 RIQVPVSGFSDDYMVVDDLPALICLVQMGVLEIHTWGSREENLEQPDRIIFDLDPDEALP 710 Query: 692 WATVVEGAQLVRGLLKEIGLDCFLKTSGGKGLHVMVPIRPEHDWAVVKDWAHRFAAHLAR 751 W TVVE AQLV LL+ +GL+ F+KT+GGKG+HV++PI PEH W +K ++ A +L + Sbjct: 711 WTTVVESAQLVHALLQALGLESFVKTTGGKGVHVVIPIVPEHSWQTIKAFSKSAAQYLEK 770 Query: 752 HLPDRFIAKMSKAARNGKIFIDYLRNAPGATTVVAYSVRARDGAPVSVPITWEELEQGKG 811 LPDRF + MSK R GK+FIDYLRNAPGAT + AYS RA+ A VSVPI+WEEL G Sbjct: 771 QLPDRFTSNMSKEKRTGKVFIDYLRNAPGATAIAAYSSRAKPSATVSVPISWEELNM--G 828 Query: 812 IKADHFRVSTMPARIRSLEQHDPWAGFGQAPQRLTKAMLAAF 853 +++D F ++ +P R+ + ++ DPW + + Q +T AML F Sbjct: 829 VRSDSFTIANLPERL-ARQKQDPWQDYERLRQHITTAMLEMF 869 >ref|ZP_08137910.1| ATP-dependent DNA ligase [Pseudomonas sp. TJI-51] gb|EGC00823.1| ATP-dependent DNA ligase [Pseudomonas sp. TJI-51] Length = 928 Score = 737 bits (1903), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/863 (44%), Positives = 518/863 (60%), Gaps = 47/863 (5%) Query: 6 LDRYRAKRDFTITPEPSGHASRSR--AEAQSQSLQFFIQRHHARRLHYDFRLELDGVLKS 63 L++Y RDF +PEPSG + +R + Q+LQF +Q+H A RLHYDFRLEL+G LKS Sbjct: 84 LEKYNQMRDFAASPEPSGSSKPARRGKRTEPQALQFCVQKHDATRLHYDFRLELNGTLKS 143 Query: 64 WAVPKGPSLDPHDKRLAVRVEDHPFDYGSFEGDIPAHQYGAGHVVLWDRGQWRPHGDARA 123 WA+PKGP DP KRL+V VEDHP DY SFEG IP YGAG V++WDRG W P GD Sbjct: 144 WAIPKGPCFDPKVKRLSVHVEDHPLDYASFEGTIPKGHYGAGEVIVWDRGIWIPQGDPDE 203 Query: 124 GLAKGHLSFELEGEKLQGRWALVRMGKPAADGK-ENWLLIKDDDAAAASGEQAAITELRP 182 KG L FEL+GEKL G W LVR +GK E W LIK D +A + +P Sbjct: 204 AYRKGRLKFELQGEKLSGLWNLVRTN---IEGKQEQWFLIKHQDESARPIADYDVVSEQP 260 Query: 183 ESVKDLGDQAPPVKARASAKAAPDSTGP---------------MPAQMQAQLATLVDRAP 227 SV L D+ K R K++ S P +P ++ QLATLV+ +P Sbjct: 261 NSV--LSDRTVIPKKRGKPKSSTPSESPDKAEPLRTAHAVPADLPEKLAPQLATLVESSP 318 Query: 228 AGEQWLCELKFDGYRGLCRIDHGQAAIYTREGLDWSHRWPILAQALARLPVDEAWIDGEV 287 G +W E+KFDGYR LCR++ + ++TR G DW+ + A A+ L ++ AW+DGE+ Sbjct: 319 QGNEWRFEIKFDGYRMLCRVEGDEVRLFTRNGHDWTDKLSKQAAAIKELGLESAWLDGEI 378 Query: 288 VALDAQGQISFEALQNLARGDRQQADGIRLALYAFDLLYLNGHDLREIPLRQRKELLREL 347 V +A+G F+ LQN + Q + Y FDL YLNG DLR +P+ QR+ L+++ Sbjct: 379 VVPNAEGVPDFQLLQNAFDAGKSQG----IIYYLFDLPYLNGADLRLVPVEQRRAALKQV 434 Query: 348 IPGSDPEGLLLYSEHIEGHAAEVFRHACQHGMEGIVLKRADAPYTGRRDRYWLKLKCEHR 407 + S+ LL +S+ + ACQ MEG++ KR+ +PY RR W+KLKC+HR Sbjct: 435 ME-SNEHPLLRFSDDFTEDVDALMNSACQMKMEGLIGKRSGSPYVSRRSDSWIKLKCKHR 493 Query: 408 QEFVIAGYTEPAGQRSGFGAILVGVYDEHE-QLRYAGRVGTGFDDKLLETLLKQFGPLEQ 466 QEFVI G+T+P G RSGFGA+++ + ++ +LRYAG+VGTGF + L T+LK+ PLEQ Sbjct: 494 QEFVIVGFTDPKGARSGFGALVLALTNKDSGELRYAGKVGTGFTESTLATILKKLLPLEQ 553 Query: 467 DQPAFANPPTGQQRRGVHWLRPALVAEVRFAQWTSTGILRHGSFVALREDKDPHQIRREG 526 + A+PP G +G+HWL+P L+AEV FA+ TS G++RH F +R DK I E Sbjct: 554 KKVPVAHPPKGVDAKGIHWLKPELLAEVMFAEITSDGVVRHAVFHGIRTDKPAKDITEEK 613 Query: 527 PQPLAEAKADAKAPAAAPARSPGKASDLSAPVTVAGVKLTHPGKILFPDTGLTKLELARY 586 P P + AKA A P T + VK+THP +++ P +GLTK ELA Y Sbjct: 614 PAPAPKKATSAKAEATKP--------------TSSKVKITHPERVIDPSSGLTKRELAEY 659 Query: 587 YQSVAPWILPELRQRPLSLVRCPDGHAGKCFFQKHTGQGMPEAIDTIEVPEGEGHAQYMM 646 Y V+PW+LP L+ RP++LVR P+G G+ FFQK+ + I T VP+ E M+ Sbjct: 660 YAQVSPWLLPHLKDRPIALVRAPEGITGELFFQKNADRLAIPNITT--VPKAEAGKAGMV 717 Query: 647 VNDVAGLVATVQMGVLELHAWGATGAALDHPDRVVFDLDPADDVPWATVVEGAQLVRGLL 706 +N V LV VQM +ELH+W T A +D PDR V DLDP +PW +VE QL +L Sbjct: 718 INSVEALVGAVQMSTIELHSWNGTTARIDQPDRFVLDLDPDPALPWRAMVEATQLTLVVL 777 Query: 707 KEIGLDCFLKTSGGKGLHVMVPIRPEHDWAVVKDWAHRFAAHLARHLPDRFIAKMSKAAR 766 E+GL FLKTSGGKG+H+MVP+ P+ W VK ++ ++A+ +PDRF A + R Sbjct: 778 DELGLQSFLKTSGGKGIHIMVPLTPKASWEEVKSFSQAVVKYIAKLIPDRFSAVLGPKNR 837 Query: 767 NGKIFIDYLRNAPGATTVVAYSVRARDGAPVSVPITWEELEQGKGIKADHFRVSTMPARI 826 GKIFIDYLRNA GATTV Y+ RAR+G PVSVPI EE+ + K A + ++ + R+ Sbjct: 838 IGKIFIDYLRNAKGATTVNVYAARAREGLPVSVPIYREEVAELKS--AARWNITNLQERL 895 Query: 827 RSLEQHDPWAGFGQAPQRLTKAM 849 L DPWA Q +T M Sbjct: 896 DELGGDDPWAELASTKQLITSEM 918 >gb|EGH66324.1| ATP-dependent DNA ligase [Pseudomonas syringae pv. actinidiae str. M302091] Length = 851 Score = 737 bits (1902), Expect = 0.0, Method: Compositional matrix adjust. Identities = 397/854 (46%), Positives = 529/854 (61%), Gaps = 32/854 (3%) Query: 9 YRAKRDFTITPEPSGHASRSRAEAQSQSLQFFIQRHHARRLHYDFRLELDGVLKSWAVPK 68 Y KR+F +T EP+ S+ + +A+S +L F IQ+H AR LHYDFRLELDG LKSWAVPK Sbjct: 8 YTRKRNFDVTSEPA--ESKRKGKARSGALSFVIQKHDARNLHYDFRLELDGTLKSWAVPK 65 Query: 69 GPSLDPHDKRLAVRVEDHPFDYGSFEGDIPAHQYGAGHVVLWDRGQWRPHGDARAGLAKG 128 GPSLDP KRLAV VEDHP DY +FEG IP QYG G V++WDRG W+PHGD R A G Sbjct: 66 GPSLDPKQKRLAVHVEDHPLDYAAFEGSIPKGQYGGGDVIVWDRGIWQPHGDPRKTYADG 125 Query: 129 HLSFELEGEKLQGRWALVRMGKPAADGKENWLLIKDDDAAAASGEQAAITELRPESVKD- 187 L F L GEKL G WALVR + KE WLLIK+ D A S + ITE +P+SV Sbjct: 126 KLKFTLIGEKLSGEWALVRTRLKGSGSKEQWLLIKEKDDIARSAAEYDITEAQPQSVISG 185 Query: 188 ----LGDQAP------PVKARASAKAAPDSTGPM-PAQMQAQLATLVDRAPAGEQWLCEL 236 G AP V+A+ + K AP + P + QLATLVD PAG+ WL E+ Sbjct: 186 AHVGAGRSAPAKPKAKAVEAKPARKPAPKKANVVFPDTLAPQLATLVDAPPAGD-WLYEI 244 Query: 237 KFDGYRGLCRIDHGQAAIYTREGLDWSHRWPILAQALARLPVDEAWIDGEVVALDAQGQI 296 KFDGYR L RI + + ++TR G DW+ + P L +AL L + ++W DGEVV LD QG Sbjct: 245 KFDGYRMLTRIQNDEVRLFTRNGNDWTDQLPELTKALKGLKLQDSWFDGEVVVLDEQGLP 304 Query: 297 SFEALQNLARGDRQQADGIRLALYAFDLLYLNGHDLREIPLRQRKELLRELIPGSDPEGL 356 F+ LQN + + Y FD+L+L+G DLRE+PL QR++ L++++ GS L Sbjct: 305 DFQGLQNAFDAGHSK----NIFYYLFDMLFLSGEDLREVPLEQRRDALKQVL-GSQRSRL 359 Query: 357 LLYSEHIEGHAAEVFRHACQHGMEGIVLKRADAPYTGRRDRYWLKLKCEHRQEFVIAGYT 416 L YS+ + ++ A G+EG++ KRA + Y G+R+ W+KLKC RQEFVI GYT Sbjct: 360 LRYSDAFQAGHKDIVASAAAMGLEGVIGKRAGSAYVGKRNADWIKLKCRLRQEFVIVGYT 419 Query: 417 EPAGQRSGFGAILVGVYDEHEQLRYAGRVGTGFDDKLLETLLKQFGPLEQDQPAFANPPT 476 P G RS FGA+L+ V D+ + L YAGRVGTGF + L+ + KQ PL +++ AN T Sbjct: 420 APQGSRSAFGALLLAVNDDAQGLVYAGRVGTGFTEATLKHVHKQLKPLHREESPLANKLT 479 Query: 477 GQQRRGVHWLRPALVAEVRFAQWTSTGILRHGSFVALREDKDPHQIRREGPQPLAEAKAD 536 Q R V W+ P LV E FAQWT GI+R +F LR DK + RE QP AKA Sbjct: 480 SAQAREVQWVEPTLVCEAEFAQWTREGIVRQAAFFGLRSDKPATDVVREEAQP---AKAA 536 Query: 537 AKAPAAAPARSPGKASDLSAPVTVAGVKLTHPGKILFPDTGLTKLELARYYQSVAPWILP 596 + P P+R PGK + V VAG ++HP +++ TG K+ELA++Y+S+A WILP Sbjct: 537 SVTP--EPSRQPGKKT-ARGKVDVAGTGISHPQRVIDSKTGTKKIELAQFYESIADWILP 593 Query: 597 ELRQRPLSLVRCPDGHAGKCFFQKHTGQGMPEAIDTIEVPEGEGHAQYMMVNDVAGLVAT 656 L +RP++L+RCP+G G+ FFQKH I ++ GHA M ++ V LV Sbjct: 594 FLNKRPVALLRCPEGIDGEQFFQKHAEHLAIPHIRQLDRALDPGHAALMEIDSVQALVGA 653 Query: 657 VQMGVLELHAWGATGAALDHPDRVVFDLDPADDVPWATVVEGAQLVRGLLKEIGLDCFLK 716 QMG +ELH WG T ++ PD V DLDP +PW +++E Q+V +L+E+GL+ FLK Sbjct: 654 AQMGAIELHTWGTTRDRIETPDHFVLDLDPDPALPWRSMIEATQIVLAVLEELGLEAFLK 713 Query: 717 TSGGKGLHVMVPIRPEHDWAVVKDWAHRFAAHLARHLPDRFIAKMSKAARNGKIFIDYLR 776 TSGGKG+H++VP+ + +W VK +A A ++R LP+RF A M R GKIFIDYLR Sbjct: 714 TSGGKGMHIIVPLARQAEWDTVKAFAKAIAEFISRQLPERFTATMGPKNRVGKIFIDYLR 773 Query: 777 NAPGATTVVAYSVRARDGAPVSVPITWEELEQGKGIKAD-HFRVSTMPARIRSLEQHDPW 835 N+ G +TV AYSVRAR G PVSVPI EL G+ + + ++ + R L + DPW Sbjct: 774 NSRGGSTVTAYSVRARPGLPVSVPIALHEL---AGLTSSAQWDITNLEQRFSQL-KDDPW 829 Query: 836 AGFGQAPQRLTKAM 849 AG+ +++T+ M Sbjct: 830 AGYSNR-RKITQKM 842 >ref|YP_347829.1| ATP-dependent DNA ligase [Pseudomonas fluorescens Pf0-1] gb|ABA73840.1| ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module [Pseudomonas fluorescens Pf0-1] Length = 848 Score = 733 bits (1892), Expect = 0.0, Method: Compositional matrix adjust. Identities = 401/867 (46%), Positives = 524/867 (60%), Gaps = 52/867 (5%) Query: 5 KLDRYRAKRDFTITPEPSGHASRSRAEAQSQSLQFFIQRHHARRLHYDFRLELDGVLKSW 64 LD Y RDF+ T EP+ R + A +LQF IQ+H A LHYDFRLELDG LKSW Sbjct: 4 NLDDYNRMRDFSATSEPAAGHRRGKKPAGDHALQFCIQKHDASHLHYDFRLELDGALKSW 63 Query: 65 AVPKGPSLDPHDKRLAVRVEDHPFDYGSFEGDIPAHQYGAGHVVLWDRGQWRPHGDARAG 124 AVPKGPSLDP KRLAV VEDHP DY +FEG IP YGAG V++WDRG W P D Sbjct: 64 AVPKGPSLDPKVKRLAVHVEDHPLDYATFEGSIPEGHYGAGDVIVWDRGVWIPLEDPEKA 123 Query: 125 LAKGHLSFELEGEKLQGRWALVRMGKPAADGKENWLLIKDDDAAAASGEQAAITELRPES 184 AKG L FEL+GEKL G W LVR P KE W LIK D AA + P+S Sbjct: 124 YAKGKLKFELQGEKLAGVWNLVRTHMPGK--KEQWFLIKHQDGAARPQSDYDVLVAEPDS 181 Query: 185 VKDLGDQAPPVKARASAKAAPDSTGP-------------------MPAQMQAQLATLVDR 225 V L ++ K R SAK GP +PAQ++ QLATLV+ Sbjct: 182 V--LSERTIVDKPRLSAKQVKPLQGPAKAPRKSASGKLTGAHKAKIPAQLKPQLATLVES 239 Query: 226 APAGEQWLCELKFDGYRGLCRIDHGQAAIYTREGLDWSHRWPILAQALARLPVDEAWIDG 285 AP G+ W E+KFDGYR + RID + ++TR G DW+H+ P AQALA L ++ AW+DG Sbjct: 240 APEGD-WQYEIKFDGYRIMARIDQDEVQLFTRNGHDWTHKLPKQAQALAALGLESAWLDG 298 Query: 286 EVVALDAQGQISFEALQNLARGDRQQADGIRLALYAFDLLYLNGHDLREIPLRQRKELLR 345 E+V DA G F+ALQN R + + Y FDL YLNG DLRE+ + +R+ L Sbjct: 299 EMVVADADGVPDFQALQNAFDSGRSE----NIVYYLFDLPYLNGVDLREVAVEERRAALA 354 Query: 346 ELIPG-SDPEGLLLYSEHIEGHAAEVFRHACQHGMEGIVLKRADAPYTGRRDRYWLKLKC 404 ++ DP LL +SE + + ACQ MEG++ KR +PY RR W+KLKC Sbjct: 355 TVLKTHQDP--LLRFSEAFDETPQALLNSACQMRMEGLIGKRLGSPYVSRRSSDWIKLKC 412 Query: 405 EHRQEFVIAGYTEPAGQRSGFGAILVGVYDEHE-QLRYAGRVGTGFDDKLLETLLKQFGP 463 +HRQEFVI GYT+P G RS FGA+L+G++D +LRYAG+VGTGF++ L+++L Q P Sbjct: 413 KHRQEFVIVGYTDPKGARSSFGALLLGLHDRDSGELRYAGKVGTGFNETTLKSILAQLKP 472 Query: 464 LEQDQPAFANPPTGQQRRGVHWLRPALVAEVRFAQWTSTGILRHGSFVALREDKDPHQIR 523 L +PA ANPPTG + +GVHWL+P+L+AEV FA+ T G +RH F LREDK I Sbjct: 473 LRVKKPAVANPPTGFEAKGVHWLKPSLLAEVAFAEMTQDGSVRHAVFHGLREDKPAKDIT 532 Query: 524 REGPQPLAEAKADAKAPAAAPARSPGKASDLSAPVTVAGVKLTHPGKILFPDTGLTKLEL 583 E +P+ +K ++ AP+ + + GK V++THP +++ +G TK++L Sbjct: 533 EERAKPMNTSKTESTAPSQS-GLADGK------------VRITHPDRVIDASSGTTKMQL 579 Query: 584 ARYYQSVAPWILPELRQRPLSLVRCPDGHAGKCFFQKHTGQGMPEAIDTIEVPEGEGHAQ 643 A YY SVA WILP+L+ RP++LVR PDG AG FFQK+ AI I + E Q Sbjct: 580 AEYYASVAEWILPQLKDRPVALVRAPDGIAGDLFFQKNAEH---LAIPGIRTLDKELTGQ 636 Query: 644 -YMMVNDVAGLVATVQMGVLELHAWGATGAALDHPDRVVFDLDPADDVPWATVVEGAQLV 702 M++N+ L+ VQM +ELH W AT LD PDR V DLDP +PW +++E L Sbjct: 637 PVMLINNAEALIGAVQMSTVELHTWNATTTDLDKPDRFVLDLDPDPALPWKSMIEATALT 696 Query: 703 RGLLKEIGLDCFLKTSGGKGLHVMVPIRPEHDWAVVKDWAHRFAAHLARHLPDRFIAKMS 762 +L E+GL FLKTSGGKG+H++VP+ +H W VKD++H H+A+ LP+RF A Sbjct: 697 LTVLDELGLKAFLKTSGGKGIHLVVPLTRKHGWDEVKDFSHAIVTHMAKLLPERFSAVSG 756 Query: 763 KAARNGKIFIDYLRNAPGATTVVAYSVRARDGAPVSVPITWEELEQGKGIKADHFRVSTM 822 R G+IFIDYLRN GATT+ AY+ R R+G PVSVP+ EE+ + KG AD + V + Sbjct: 757 PKNRVGRIFIDYLRNGLGATTICAYAARTREGLPVSVPLFREEVGEIKG--ADQWNVHNV 814 Query: 823 PARIRSLEQHDPWAGFGQAPQRLTKAM 849 R+ + +PWA + Q +T M Sbjct: 815 HERLAEVGD-EPWADIKKTRQSITAEM 840 >gb|EGH10893.1| ATP-dependent DNA ligase [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 851 Score = 733 bits (1891), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/854 (46%), Positives = 531/854 (62%), Gaps = 32/854 (3%) Query: 9 YRAKRDFTITPEPSGHASRSRAEAQSQSLQFFIQRHHARRLHYDFRLELDGVLKSWAVPK 68 Y KR+F +T EP+ S+ + +A+S +L F IQ+H AR LHYDFRLELDG LKSWAVPK Sbjct: 8 YTRKRNFDVTSEPA--ESKRKGKARSGALSFVIQKHDARNLHYDFRLELDGTLKSWAVPK 65 Query: 69 GPSLDPHDKRLAVRVEDHPFDYGSFEGDIPAHQYGAGHVVLWDRGQWRPHGDARAGLAKG 128 GPSLDP KRLAV VEDHP DY +FEG IP QYG G V++WDRG W+PHGD A G Sbjct: 66 GPSLDPKQKRLAVHVEDHPLDYAAFEGSIPKGQYGGGDVIVWDRGIWQPHGDPHETYADG 125 Query: 129 HLSFELEGEKLQGRWALVRMGKPAADGKENWLLIKDDDAAAASGEQAAITELRPESVKD- 187 L F L GEKL G WALVR + KE WLLIK+ D A + ITE +P+SV Sbjct: 126 KLKFTLIGEKLSGEWALVRTRLKGSGSKEQWLLIKEKDDIARPAAEYDITEAQPQSVISG 185 Query: 188 --LG-DQAPPVKARASAKAAPDSTGPMPAQ--------MQAQLATLVDRAPAGEQWLCEL 236 +G ++ P K++A A A + P P + + QLATLVD PAG+ WL E+ Sbjct: 186 AHIGAGRSAPAKSKAKAVEAKPARKPAPKKANVVFPDTLAPQLATLVDAPPAGD-WLYEI 244 Query: 237 KFDGYRGLCRIDHGQAAIYTREGLDWSHRWPILAQALARLPVDEAWIDGEVVALDAQGQI 296 KFDGYR L RI + + ++TR G DW+ + P L +AL L + ++W DGEVV LD QG Sbjct: 245 KFDGYRMLTRIQNDEVRLFTRNGNDWTDQLPELTKALKGLKLQDSWFDGEVVVLDEQGLP 304 Query: 297 SFEALQNLARGDRQQADGIRLALYAFDLLYLNGHDLREIPLRQRKELLRELIPGSDPEGL 356 F+ LQN + + Y FD+ +L+G DLRE+PL QR++ L++++ GS L Sbjct: 305 DFQGLQNAFDVGHSK----NIFYYLFDMPFLSGEDLREVPLEQRRDALKQVL-GSQRSRL 359 Query: 357 LLYSEHIEGHAAEVFRHACQHGMEGIVLKRADAPYTGRRDRYWLKLKCEHRQEFVIAGYT 416 L YS+ + ++ A G+EG++ KRA + Y G+R+ W+KLKC RQEFVI GYT Sbjct: 360 LRYSDAFQAGHQDIVASAAAMGLEGVIGKRAGSAYVGKRNADWIKLKCRLRQEFVIVGYT 419 Query: 417 EPAGQRSGFGAILVGVYDEHEQLRYAGRVGTGFDDKLLETLLKQFGPLEQDQPAFANPPT 476 P G RS FGA+L+ V D+ + L YAGRVGTGF + L+ + KQ PL +++ AN T Sbjct: 420 APQGSRSAFGALLLAVNDDAQGLVYAGRVGTGFTEATLKYVHKQLKPLHREESPLANKLT 479 Query: 477 GQQRRGVHWLRPALVAEVRFAQWTSTGILRHGSFVALREDKDPHQIRREGPQPLAEAKAD 536 Q RGV W+ P LV E FAQWT GI+R +F LR DK + RE QP AKA Sbjct: 480 SAQARGVQWVEPTLVCEAEFAQWTREGIVRQAAFFGLRSDKPATDVVREEAQP---AKAA 536 Query: 537 AKAPAAAPARSPGKASDLSAPVTVAGVKLTHPGKILFPDTGLTKLELARYYQSVAPWILP 596 + P P+R PGK + V VAG ++HP +++ TG K+ELA++Y+S+A W+LP Sbjct: 537 SVTP--EPSRQPGKKT-ARGKVDVAGTGISHPQRVIDSKTGTKKIELAQFYESIADWVLP 593 Query: 597 ELRQRPLSLVRCPDGHAGKCFFQKHTGQGMPEAIDTIEVPEGEGHAQYMMVNDVAGLVAT 656 L +RP++L+RCP+G G+ FFQKH I ++ GHA M ++ V LV Sbjct: 594 FLDKRPVALLRCPEGIDGEQFFQKHAEHLAIPHIRQLDRALDPGHAALMEIDSVQALVGA 653 Query: 657 VQMGVLELHAWGATGAALDHPDRVVFDLDPADDVPWATVVEGAQLVRGLLKEIGLDCFLK 716 QMG +ELH WGAT ++ PD V DLDP +PW +++E Q+V +L+E+GL+ FLK Sbjct: 654 AQMGAIELHTWGATRDRIETPDHFVLDLDPDPALPWRSMIEATQMVLAVLEELGLEAFLK 713 Query: 717 TSGGKGLHVMVPIRPEHDWAVVKDWAHRFAAHLARHLPDRFIAKMSKAARNGKIFIDYLR 776 TSGGKG+H++VP+ + +W VK +A A ++R LP+RF A M R GKIFIDYLR Sbjct: 714 TSGGKGMHIIVPLARQAEWDTVKAFAKAIAEFISRQLPERFTATMGPKNRVGKIFIDYLR 773 Query: 777 NAPGATTVVAYSVRARDGAPVSVPITWEELEQGKGIKAD-HFRVSTMPARIRSLEQHDPW 835 N+ G +TV AYSVRAR G PVSVPI EL G+ + + ++ + R+ L + DPW Sbjct: 774 NSRGGSTVTAYSVRARPGLPVSVPIALHEL---TGLTSSAQWDITNLEQRLSQL-KDDPW 829 Query: 836 AGFGQAPQRLTKAM 849 AG+ +++T+ M Sbjct: 830 AGYSNR-RKITQKM 842 >gb|EGH99524.1| ATP-dependent DNA ligase [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 851 Score = 732 bits (1890), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/854 (45%), Positives = 527/854 (61%), Gaps = 32/854 (3%) Query: 9 YRAKRDFTITPEPSGHASRSRAEAQSQSLQFFIQRHHARRLHYDFRLELDGVLKSWAVPK 68 Y KR+F +T EP+ S+ + +A+S +L F IQ+H AR LHYDFRLELDG LKSWAVPK Sbjct: 8 YTRKRNFDVTSEPA--ESKRKGKARSGALSFVIQKHDARNLHYDFRLELDGTLKSWAVPK 65 Query: 69 GPSLDPHDKRLAVRVEDHPFDYGSFEGDIPAHQYGAGHVVLWDRGQWRPHGDARAGLAKG 128 GPSLDP KRLAV VEDHP DY +FEG IP QYG G V++WDRG W+PHGD R G Sbjct: 66 GPSLDPKQKRLAVHVEDHPLDYAAFEGSIPKGQYGGGDVIVWDRGIWQPHGDPRKTYEDG 125 Query: 129 HLSFELEGEKLQGRWALVRMGKPAADGKENWLLIKDDDAAAASGEQAAITELRPESVKD- 187 L F L GEKL G WALVR + KE WLLIK+ D A + ITE +P+SV Sbjct: 126 KLKFTLIGEKLSGEWALVRTRLNGSGSKEQWLLIKEKDDIARPAAEYDITEAQPQSVISG 185 Query: 188 ---LGDQAPPVKARASAKAAPDSTGPMPAQMQA--------QLATLVDRAPAGEQWLCEL 236 ++ P K +A A A + P P + +A QLATLVD PAG+ WL E+ Sbjct: 186 AHVGAGRSAPAKPKAKAVEAKPARKPAPKKAKAVFPDTFAPQLATLVDAPPAGD-WLYEI 244 Query: 237 KFDGYRGLCRIDHGQAAIYTREGLDWSHRWPILAQALARLPVDEAWIDGEVVALDAQGQI 296 KFDGYR L RI + + ++TR G DW+ + P L +AL L + ++W DGEVV LD QG Sbjct: 245 KFDGYRMLTRIQNDEVRLFTRNGNDWTDQLPELTKALKGLKLQDSWFDGEVVVLDEQGLP 304 Query: 297 SFEALQNLARGDRQQADGIRLALYAFDLLYLNGHDLREIPLRQRKELLRELIPGSDPEGL 356 F+ LQN + + Y FD+ +L+G DLRE+PL QR++ L++++ GS L Sbjct: 305 DFQGLQNAF----DEGHSKNIFYYLFDMPFLSGEDLREVPLEQRRDALKQVL-GSQRSRL 359 Query: 357 LLYSEHIEGHAAEVFRHACQHGMEGIVLKRADAPYTGRRDRYWLKLKCEHRQEFVIAGYT 416 L YS+ + ++ A G+EG++ KRA + Y G+R+ W+KLKC RQEFVI GYT Sbjct: 360 LRYSDAFQAGHQDIVASAAAMGLEGVIGKRAGSAYVGKRNADWIKLKCRLRQEFVIVGYT 419 Query: 417 EPAGQRSGFGAILVGVYDEHEQLRYAGRVGTGFDDKLLETLLKQFGPLEQDQPAFANPPT 476 P G RS FGA+L+ V D+ + L YAGRVGTGF + L+ + KQ PL +++ A T Sbjct: 420 APQGSRSAFGALLLAVNDDAQGLVYAGRVGTGFTEATLKHVHKQLKPLHREESPLAKKLT 479 Query: 477 GQQRRGVHWLRPALVAEVRFAQWTSTGILRHGSFVALREDKDPHQIRREGPQPLAEAKAD 536 Q RGV W+ P LV E FAQWT GI+R +F LR DK + RE QP A+ Sbjct: 480 SAQARGVQWVEPTLVCEAEFAQWTREGIVRQAAFFGLRGDKPAGDVVREDAQP-----AE 534 Query: 537 AKAPAAAPARSPGKASDLSAPVTVAGVKLTHPGKILFPDTGLTKLELARYYQSVAPWILP 596 A + P+R PGK + V VAG ++HP +++ TG K+ELA++Y+S+A WILP Sbjct: 535 AASVTPEPSRQPGKKT-ARGKVDVAGTGISHPQRVIDSTTGTKKIELAQFYESIADWILP 593 Query: 597 ELRQRPLSLVRCPDGHAGKCFFQKHTGQGMPEAIDTIEVPEGEGHAQYMMVNDVAGLVAT 656 L +RP++L+RCP+G G+ FFQKH I ++ GHA M ++ V LV Sbjct: 594 YLNKRPVALLRCPEGIDGEQFFQKHAEHLAIPHIRQLDRALDPGHAALMEIDSVQALVGA 653 Query: 657 VQMGVLELHAWGATGAALDHPDRVVFDLDPADDVPWATVVEGAQLVRGLLKEIGLDCFLK 716 QMG +ELH WGAT ++ PD V DLDP +PW +++E Q+V +L+E+GL+ FLK Sbjct: 654 AQMGAIELHTWGATRDRIETPDHFVLDLDPDPALPWRSMIEATQMVLAVLEELGLEAFLK 713 Query: 717 TSGGKGLHVMVPIRPEHDWAVVKDWAHRFAAHLARHLPDRFIAKMSKAARNGKIFIDYLR 776 TSGGKG+H++VP+ + +W VK +A A ++R LP+RF A M R GKIFIDYLR Sbjct: 714 TSGGKGMHIIVPLARQAEWDTVKAFAKAIAEFISRQLPERFTATMGPKNRVGKIFIDYLR 773 Query: 777 NAPGATTVVAYSVRARDGAPVSVPITWEELEQGKGIKAD-HFRVSTMPARIRSLEQHDPW 835 N+ G +TV AYSVRAR G PVSVPI EL G+ + + ++ + R+ L + DPW Sbjct: 774 NSRGGSTVTAYSVRARPGLPVSVPIALHEL---TGLTSSAQWDITNLEQRLSQL-KSDPW 829 Query: 836 AGFGQAPQRLTKAM 849 AG+ +++T+ M Sbjct: 830 AGYSNR-RKITQKM 842 >ref|ZP_03399463.1| DNA ligase, ATP-dependent [Pseudomonas syringae pv. tomato T1] ref|ZP_07229656.1| ATP-dependent DNA ligase [Pseudomonas syringae pv. tomato Max13] ref|ZP_07253327.1| ATP-dependent DNA ligase [Pseudomonas syringae pv. tomato K40] ref|ZP_07257830.1| ATP-dependent DNA ligase [Pseudomonas syringae pv. tomato NCPPB 1108] gb|EEB57466.1| DNA ligase, ATP-dependent [Pseudomonas syringae pv. tomato T1] Length = 851 Score = 731 bits (1888), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/854 (45%), Positives = 528/854 (61%), Gaps = 32/854 (3%) Query: 9 YRAKRDFTITPEPSGHASRSRAEAQSQSLQFFIQRHHARRLHYDFRLELDGVLKSWAVPK 68 Y KR+F +T EP+ S+ + +A+S +L F IQ+H AR LHYDFRLELDG LKSWAVPK Sbjct: 8 YTRKRNFDVTSEPA--ESKRKGKARSGALSFVIQKHDARNLHYDFRLELDGTLKSWAVPK 65 Query: 69 GPSLDPHDKRLAVRVEDHPFDYGSFEGDIPAHQYGAGHVVLWDRGQWRPHGDARAGLAKG 128 GPSLDP KRLAV VEDHP DY +FEG IP QYG G V++WDRG W+PHGD R +G Sbjct: 66 GPSLDPKQKRLAVHVEDHPLDYAAFEGSIPKGQYGGGDVIVWDRGIWQPHGDPRKTYEEG 125 Query: 129 HLSFELEGEKLQGRWALVRMGKPAADGKENWLLIKDDDAAAASGEQAAITELRPESVKD- 187 L F L GEKL G WALVR + KE WLLIK+ D A + ITE +P+SV Sbjct: 126 KLKFTLIGEKLSGEWALVRTRLKGSGSKEQWLLIKEKDDIARPAAEYDITEAQPQSVISG 185 Query: 188 ---LGDQAPPVKARASAKAAPDSTGPMPAQMQA--------QLATLVDRAPAGEQWLCEL 236 ++ P + +A A A + P P + +A QLATLVD PAG+ WL E+ Sbjct: 186 AHVGAGRSAPAEPKAKAVEAKPARKPAPKKAKAVFPDTFAPQLATLVDAPPAGD-WLYEI 244 Query: 237 KFDGYRGLCRIDHGQAAIYTREGLDWSHRWPILAQALARLPVDEAWIDGEVVALDAQGQI 296 KFDGYR L RI + + ++TR G DW+ + P L +AL L + ++W DGEVV LD QG Sbjct: 245 KFDGYRMLTRIQNDEVRLFTRNGNDWTDQLPELTKALKGLKLQDSWFDGEVVVLDEQGLP 304 Query: 297 SFEALQNLARGDRQQADGIRLALYAFDLLYLNGHDLREIPLRQRKELLRELIPGSDPEGL 356 F+ LQN + + Y FD+ +L+G DLRE+PL QR++ L++++ GS L Sbjct: 305 DFQGLQNAF----DEGHSKNIFYYLFDMPFLSGEDLREVPLEQRRDALKQVL-GSQRSRL 359 Query: 357 LLYSEHIEGHAAEVFRHACQHGMEGIVLKRADAPYTGRRDRYWLKLKCEHRQEFVIAGYT 416 L YS+ + ++ A G+EG++ KRA + Y G+R+ W+KLKC RQEFVI GYT Sbjct: 360 LRYSDAFQAGHQDIVASAAAMGLEGVIGKRAGSAYVGKRNADWIKLKCRLRQEFVIVGYT 419 Query: 417 EPAGQRSGFGAILVGVYDEHEQLRYAGRVGTGFDDKLLETLLKQFGPLEQDQPAFANPPT 476 P G RS FGA+L+ V D+ + L YAGRVGTGF + L+ + KQ PL +++ A T Sbjct: 420 APQGSRSAFGALLLAVNDDAQGLVYAGRVGTGFTEATLKHVHKQLKPLHREESPLAKKLT 479 Query: 477 GQQRRGVHWLRPALVAEVRFAQWTSTGILRHGSFVALREDKDPHQIRREGPQPLAEAKAD 536 Q RGV W+ P LV E FAQWT GI+R +F LR DK + RE QP A+ Sbjct: 480 SAQARGVQWVEPTLVCEAEFAQWTREGIVRQAAFFGLRGDKPAGDVVREDAQP-----AE 534 Query: 537 AKAPAAAPARSPGKASDLSAPVTVAGVKLTHPGKILFPDTGLTKLELARYYQSVAPWILP 596 A + P+R PGK + V VAG ++HP +++ TG K+ELA++Y+S+A WILP Sbjct: 535 AASVTPEPSRQPGKKT-ARGKVDVAGTGISHPQRVIDSTTGTKKIELAQFYESIADWILP 593 Query: 597 ELRQRPLSLVRCPDGHAGKCFFQKHTGQGMPEAIDTIEVPEGEGHAQYMMVNDVAGLVAT 656 L +RP++L+RCP+G G+ FFQKH I ++ GHA M ++ V LV Sbjct: 594 YLNKRPVALLRCPEGIDGEQFFQKHAEHLAIPHIRQLDRALDPGHAALMEIDSVQALVGA 653 Query: 657 VQMGVLELHAWGATGAALDHPDRVVFDLDPADDVPWATVVEGAQLVRGLLKEIGLDCFLK 716 QMG +ELH WGAT ++ PD V DLDP +PW +++E Q+V +L+E+GL+ FLK Sbjct: 654 AQMGAIELHTWGATRDRIETPDHFVLDLDPDPALPWRSMIEATQMVLAVLEELGLEAFLK 713 Query: 717 TSGGKGLHVMVPIRPEHDWAVVKDWAHRFAAHLARHLPDRFIAKMSKAARNGKIFIDYLR 776 TSGGKG+H++VP+ + +W VK +A A ++R LP+RF A M R GKIFIDYLR Sbjct: 714 TSGGKGMHIIVPLARQAEWDTVKAFAKAIAEFISRQLPERFTATMGPKNRVGKIFIDYLR 773 Query: 777 NAPGATTVVAYSVRARDGAPVSVPITWEELEQGKGIKAD-HFRVSTMPARIRSLEQHDPW 835 N+ G +TV AYSVRAR G PVSVPI EL G+ + + ++ + R+ L + DPW Sbjct: 774 NSRGGSTVTAYSVRARPGLPVSVPIALHEL---TGLTSSAQWDITNLEQRLSQL-KSDPW 829 Query: 836 AGFGQAPQRLTKAM 849 AG+ +++T+ M Sbjct: 830 AGYSNR-RKITQKM 842 >ref|NP_793244.1| ATP-dependent DNA ligase [Pseudomonas syringae pv. tomato str. DC3000] gb|AAO56939.1| DNA ligase, ATP-dependent, putative [Pseudomonas syringae pv. tomato str. DC3000] Length = 851 Score = 731 bits (1886), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/854 (45%), Positives = 526/854 (61%), Gaps = 32/854 (3%) Query: 9 YRAKRDFTITPEPSGHASRSRAEAQSQSLQFFIQRHHARRLHYDFRLELDGVLKSWAVPK 68 Y KR+F +T EP S+ + +A+S +L F IQ+H AR LHYDFRLELDG LKSWAVPK Sbjct: 8 YTRKRNFDVTSEPL--ESKRKGKARSGALSFVIQKHDARNLHYDFRLELDGTLKSWAVPK 65 Query: 69 GPSLDPHDKRLAVRVEDHPFDYGSFEGDIPAHQYGAGHVVLWDRGQWRPHGDARAGLAKG 128 GPSLDP KRLAV VEDHP DY +FEG IP QYG G V++WDRG W+PHGD R G Sbjct: 66 GPSLDPKQKRLAVHVEDHPLDYAAFEGSIPKGQYGGGDVIVWDRGIWQPHGDPRKTYEDG 125 Query: 129 HLSFELEGEKLQGRWALVRMGKPAADGKENWLLIKDDDAAAASGEQAAITELRPESVKD- 187 L F L GEKL G WALVR + KE WLLIK+ D A + ITE +P+SV Sbjct: 126 KLKFTLIGEKLSGEWALVRTRLKGSGSKEQWLLIKEKDDIARPAAEYDITEAQPQSVISG 185 Query: 188 ---LGDQAPPVKARASAKAAPDSTGPMPAQMQA--------QLATLVDRAPAGEQWLCEL 236 ++ P K +A A A + P P + +A QLATLVD PAG+ WL E+ Sbjct: 186 AHVGAGRSAPAKPKAKAVEAKPARKPAPKKAKAVFPDTFAPQLATLVDAPPAGD-WLYEI 244 Query: 237 KFDGYRGLCRIDHGQAAIYTREGLDWSHRWPILAQALARLPVDEAWIDGEVVALDAQGQI 296 KFDGYR L RI + + ++TR G DW+ + P L +AL L + ++W DGEVV LD QG Sbjct: 245 KFDGYRMLTRIQNDEVRLFTRNGNDWTDQLPELTKALKGLKLQDSWFDGEVVVLDEQGLP 304 Query: 297 SFEALQNLARGDRQQADGIRLALYAFDLLYLNGHDLREIPLRQRKELLRELIPGSDPEGL 356 F+ LQN + + Y FD+ +L+G DLRE+PL QR++ L++++ GS L Sbjct: 305 DFQGLQNAF----DEGHSKNIFYYLFDMPFLSGEDLREVPLEQRRDALKQVL-GSQRSRL 359 Query: 357 LLYSEHIEGHAAEVFRHACQHGMEGIVLKRADAPYTGRRDRYWLKLKCEHRQEFVIAGYT 416 L YS+ + ++ A G+EG++ KRA + Y G+R+ W+KLKC RQEFVI GYT Sbjct: 360 LRYSDAFQAGHQDIVASAAAMGLEGVIGKRAGSAYVGKRNADWIKLKCRLRQEFVIVGYT 419 Query: 417 EPAGQRSGFGAILVGVYDEHEQLRYAGRVGTGFDDKLLETLLKQFGPLEQDQPAFANPPT 476 P G RS FGA+L+ V D+ + L YAGRVGTGF + L+ + KQ PL +++ A T Sbjct: 420 APQGSRSAFGALLLAVNDDAQGLVYAGRVGTGFTEATLKHVHKQLKPLHREESPLAKKLT 479 Query: 477 GQQRRGVHWLRPALVAEVRFAQWTSTGILRHGSFVALREDKDPHQIRREGPQPLAEAKAD 536 Q RGV W+ P LV E FAQWT GI+R +F LR DK + RE QP A+ Sbjct: 480 SAQARGVQWVEPTLVCEAEFAQWTREGIVRQAAFFGLRGDKPAGDVVREDAQP-----AE 534 Query: 537 AKAPAAAPARSPGKASDLSAPVTVAGVKLTHPGKILFPDTGLTKLELARYYQSVAPWILP 596 A + P+R PGK + V VAG ++HP +++ TG K+ELA++Y+S+A WILP Sbjct: 535 AASVTPEPSRQPGKKT-ARGKVDVAGTGISHPQRVIDSTTGTKKIELAQFYESIADWILP 593 Query: 597 ELRQRPLSLVRCPDGHAGKCFFQKHTGQGMPEAIDTIEVPEGEGHAQYMMVNDVAGLVAT 656 L +RP++L+RCP+G G+ FFQKH I ++ GHA M ++ V LV Sbjct: 594 YLNKRPVALLRCPEGIDGEQFFQKHAEHLAIPHIRQLDRALDPGHAALMEIDSVQALVGA 653 Query: 657 VQMGVLELHAWGATGAALDHPDRVVFDLDPADDVPWATVVEGAQLVRGLLKEIGLDCFLK 716 QMG +ELH WGAT ++ PD V DLDP +PW +++E Q+V +L+E+GL+ FLK Sbjct: 654 AQMGAIELHTWGATRDRIETPDHFVLDLDPDPALPWRSMIEATQMVLAVLEELGLEAFLK 713 Query: 717 TSGGKGLHVMVPIRPEHDWAVVKDWAHRFAAHLARHLPDRFIAKMSKAARNGKIFIDYLR 776 TSGGKG+H++VP+ + +W VK +A A ++R LP+RF A M R GKIFIDYLR Sbjct: 714 TSGGKGMHIIVPLARQAEWDTVKAFAKAIAEFISRQLPERFTATMGPKNRVGKIFIDYLR 773 Query: 777 NAPGATTVVAYSVRARDGAPVSVPITWEELEQGKGIKAD-HFRVSTMPARIRSLEQHDPW 835 N+ G +TV AYSVRAR G PVSVPI EL G+ + + ++ + R+ L + DPW Sbjct: 774 NSRGGSTVTAYSVRARPGLPVSVPIALHEL---TGLTSSAQWDITNLEQRLSQL-KSDPW 829 Query: 836 AGFGQAPQRLTKAM 849 AG+ +++T+ M Sbjct: 830 AGYSNR-RKITQKM 842 >ref|YP_004354142.1| DNA ligase (ATP) [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gb|AEA69138.1| Putative DNA ligase (ATP) [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 871 Score = 727 bits (1877), Expect = 0.0, Method: Compositional matrix adjust. Identities = 397/880 (45%), Positives = 535/880 (60%), Gaps = 51/880 (5%) Query: 1 MSTGKLDRYRAKRDFTITPEPSGHASRSRAEAQSQSLQFFIQRHHARRLHYDFRLELDGV 60 MS+ LD Y R+F TPEP+ SR A+ + +LQF IQ+H A RLHYDFRLELDG Sbjct: 1 MSSKTLDDYNRMRNFAATPEPAAKRSRKSAKT-AHALQFCIQKHDASRLHYDFRLELDGA 59 Query: 61 LKSWAVPKGPSLDPHDKRLAVRVEDHPFDYGSFEGDIPAHQYGAGHVVLWDRGQWRPHGD 120 LKSWAVPKGPSLDP KRLAV VEDHP DY +FEG+IP YGAG V++WDRG W P D Sbjct: 60 LKSWAVPKGPSLDPKAKRLAVHVEDHPLDYATFEGNIPEGHYGAGDVIVWDRGVWIPQDD 119 Query: 121 ARAGLAKGHLSFELEGEKLQGRWALVRMGKPAADGKENWLLIKDDDAAAASGEQAAITEL 180 KG L FEL+GEKL G W LVR P +E W LIK D AA + + + Sbjct: 120 PHEAYEKGRLKFELQGEKLSGLWNLVRTHMPGK--QEQWFLIKHQDQAARPESEYDVVQA 177 Query: 181 RPESVKDLGDQAPPVKARA------------------SAKAAPDST------GPMPAQMQ 216 P SV L D+ K R S + A +T GP+P ++ Sbjct: 178 EPNSV--LSDRTLVPKRRGKAAAAKAVKQPEKAVQAKSPRGAAKTTLSGAVAGPLPDTLK 235 Query: 217 AQLATLVDRAPAGEQWLCELKFDGYRGLCRIDHGQAAIYTREGLDWSHRWPILAQALARL 276 +LATLV+ AP GE WL E+KFDGYR + I+HG + TR G DW+H+ P A+ALA L Sbjct: 236 PELATLVESAPDGE-WLYEIKFDGYRVMACIEHGDVRLLTRNGHDWTHKLPRQAEALAEL 294 Query: 277 PVDEAWIDGEVVALDAQGQISFEALQNLARGDRQQADGIRLALYAFDLLYLNGHDLREIP 336 ++ AW+DGE+V + QG F+ALQN + ++A Y FD+ YLNG DLR++P Sbjct: 295 GLESAWLDGEMVVANDQGVPDFQALQNAF----EAGSSGKIAYYLFDMPYLNGMDLRKVP 350 Query: 337 LRQRKELLRELI-PGSDPEGLLLYSEHIEGHAAEVFRHACQHGMEGIVLKRADAPYTGRR 395 +++R+ L ++ P P LL +S+ E + ACQ MEG++ KR + Y RR Sbjct: 351 VQERRAALAAVLEPNESP--LLRFSDAFEETPEALLNSACQMQMEGLIGKRIGSAYVSRR 408 Query: 396 DRYWLKLKCEHRQEFVIAGYTEPAGQRSGFGAILVGVYD-EHEQLRYAGRVGTGFDDKLL 454 W+KLKC++RQEFV+ G+++P G RS FGA+L+G++D + QLRYAG+VGTGF++ L Sbjct: 409 SNDWIKLKCKNRQEFVVVGFSDPKGARSAFGALLLGLHDADSGQLRYAGKVGTGFNETTL 468 Query: 455 ETLLKQFGPLEQDQPAFANPPTGQQRRGVHWLRPALVAEVRFAQWTSTGILRHGSFVALR 514 +++ +Q PLE + A NPP+G + +GVHWL P L+AEV FA+ T G +RH F LR Sbjct: 469 KSIYQQLLPLETKKAAVVNPPSGYEAKGVHWLEPTLLAEVAFAEMTKDGSVRHAVFHGLR 528 Query: 515 EDKDPHQIRREGPQPLAEAKADAKA-----PAAAPARSPGKASDLSAPVTVAGVKLTHPG 569 DK I +E +P+ + A K P A PA++ KA AP V++THP Sbjct: 529 NDKPAKDITQELVKPVKKTAAAKKTKAKHEPGATPAKTKSKAK---APALDGKVRITHPE 585 Query: 570 KILFPDTGLTKLELARYYQSVAPWILPELRQRPLSLVRCPDGHAGKCFFQKHTGQGMPEA 629 +++ +G TKL+LA YY SVA +ILPEL RP++LVR PDG AG+ FFQK+ + Sbjct: 586 RVIDASSGTTKLQLAEYYASVAEFILPELADRPVALVRAPDGIAGELFFQKNAERLAIPG 645 Query: 630 IDTIEVPEGEGHAQYMMVNDVAGLVATVQMGVLELHAWGATGAALDHPDRVVFDLDPADD 689 I +++ + M++N+ L+ VQM +ELH W AT LD PDR V DLDP Sbjct: 646 ITSLD--KALTGQPVMIINNAEALIGAVQMSTVELHTWNATSVDLDKPDRFVLDLDPDPA 703 Query: 690 VPWATVVEGAQLVRGLLKEIGLDCFLKTSGGKGLHVMVPIRPEHDWAVVKDWAHRFAAHL 749 +PW ++VE QL +L E+GL FLKTSGGKG+HV+VP+ + W VK ++H +H+ Sbjct: 704 LPWKSMVEATQLTLSVLDELGLKAFLKTSGGKGIHVVVPLTRKLGWDEVKGFSHAIVSHM 763 Query: 750 ARHLPDRFIAKMSKAARNGKIFIDYLRNAPGATTVVAYSVRARDGAPVSVPITWEELEQG 809 A+ LPDRF A R G+IFIDYLRN GATT+ AY+ R R+G PVSVP+ EE+ + Sbjct: 764 AKLLPDRFSAVSGPKNRVGRIFIDYLRNGLGATTICAYAARTREGLPVSVPVFREEVAEL 823 Query: 810 KGIKADHFRVSTMPARIRSLEQHDPWAGFGQAPQRLTKAM 849 KG A+ + V + R+ + H+PWAG + Q +T M Sbjct: 824 KG--ANLWNVHNVHERLAEV-GHEPWAGLKRTRQSITAEM 860